CcUC03G053640 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC03G053640
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	L10-interacting MYB domain-containing protein-like
Location	CicolChr03: 23236683 .. 23237027 (-)
RNA-Seq Expression	CcUC03G053640
Synteny	CcUC03G053640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCACTGTGAATTTTCAGCAATGTATCAGAAAGTGCATCTGCCTGGGAGTCTGCCTGGAAGTTACAATAGGAAAGAGAGACAAAATTACCTGGTTTGGACTACTAAAATGGACCATTTTCTTCCCAAGATTCTTGTCAAGCAAGTAAAAGAAGGAAATAGGGTTGATGGCACATGGACGCCTGCTGCATATACAGCAGCTCTTCAAGTCTTGAATGAAAACTTTGGTGGTGGTTTAACTAAAGAACACGTCAGAAGTCGATTAAAAACTTGGAAAAAACAGTTTCGGATTTTGAAGGAGCTTCTTGCTCATAAAGGGTTTGAATGGGATGAGGCACAATAG

mRNA sequence

ATGTATCACTGTGAATTTTCAGCAATGTATCAGAAAGTGCATCTGCCTGGGAGTCTGCCTGGAAGTTACAATAGGAAAGAGAGACAAAATTACCTGGTTTGGACTACTAAAATGGACCATTTTCTTCCCAAGATTCTTGTCAAGCAAGTAAAAGAAGGAAATAGGGTTGATGGCACATGGACGCCTGCTGCATATACAGCAGCTCTTCAAGTCTTGAATGAAAACTTTGGTGGTGGTTTAACTAAAGAACACGTCAGAAGTCGATTAAAAACTTGGAAAAAACAGTTTCGGATTTTGAAGGAGCTTCTTGCTCATAAAGGGTTTGAATGGGATGAGGCACAATAG

Coding sequence (CDS)

ATGTATCACTGTGAATTTTCAGCAATGTATCAGAAAGTGCATCTGCCTGGGAGTCTGCCTGGAAGTTACAATAGGAAAGAGAGACAAAATTACCTGGTTTGGACTACTAAAATGGACCATTTTCTTCCCAAGATTCTTGTCAAGCAAGTAAAAGAAGGAAATAGGGTTGATGGCACATGGACGCCTGCTGCATATACAGCAGCTCTTCAAGTCTTGAATGAAAACTTTGGTGGTGGTTTAACTAAAGAACACGTCAGAAGTCGATTAAAAACTTGGAAAAAACAGTTTCGGATTTTGAAGGAGCTTCTTGCTCATAAAGGGTTTGAATGGGATGAGGCACAATAG

Protein sequence

MYHCEFSAMYQKVHLPGSLPGSYNRKERQNYLVWTTKMDHFLPKILVKQVKEGNRVDGTWTPAAYTAALQVLNENFGGGLTKEHVRSRLKTWKKQFRILKELLAHKGFEWDEAQ

Homology

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BLAST of CcUC03G053640 vs. NCBI nr
Match: XP_031736187.1 (uncharacterized protein At2g29880 [Cucumis sativus] >KGN66564.1 hypothetical protein Csa_007055 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 4.1e-40
Identity = 83/106 (78.30%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 9   MYQKVHLPGSLPGSYNRKERQNYLVWTTKMDHFLPKILVKQVKEGNRVDGTWTPAAYTAA 68
           MYQK++LPGSLPGS NRKERQNYL+WTTKMDH L   LV+Q KEG++VDG W P    AA
Sbjct: 1   MYQKLYLPGSLPGSCNRKERQNYLLWTTKMDHLLATTLVEQEKEGSKVDGAWKPVE-CAA 60

Query: 69  LQVLNENFGGGLTKEHVRSRLKTWKKQFRILKELLAHKGFEWDEAQ 115
           LQVLNEN G GLTKEHVRSRLKTWKK+F ILKELLAHKGFEWDEA+
Sbjct: 61  LQVLNENLGDGLTKEHVRSRLKTWKKRFHILKELLAHKGFEWDEAK 105

[Close]

BLAST of CcUC03G053640 vs. NCBI nr
Match: KAF3973412.1 (hypothetical protein CMV_003146 [Castanea mollissima])

HSP 1 Score: 137.9 bits (346), Expect = 5.5e-29
Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 3   HCEFSAMYQKVHLPGSLPGSYNRKERQNYLVWTTKMDHFLPKILVKQVKEGNRVDGTWTP 62
           H +   MY KV+       SYN K++  Y+ WT++MD  L +ILV++VK+GN++D T  P
Sbjct: 9   HSQEQGMYHKVY----ETRSYNAKDKVKYVAWTSEMDRCLAEILVEEVKKGNKIDSTLKP 68

Query: 63  AAYTAALQVLNENFGGGLTKEHVRSRLKTWKKQFRILKELLAHKGFEWDEAQ 115
           AAY AAL  LNENFG  LTKEH+R+RLKTW+KQF ILKELLAHKGF+WDE +
Sbjct: 69  AAYRAALTALNENFGLDLTKEHIRNRLKTWRKQFGILKELLAHKGFKWDETR 116

[Close]

BLAST of CcUC03G053640 vs. NCBI nr
Match: XP_030959168.1 (uncharacterized protein LOC115981123 [Quercus lobata])

HSP 1 Score: 135.6 bits (340), Expect = 2.7e-28
Identity = 64/106 (60.38%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 9   MYQKVHLPGSLPGSYNRKERQNYLVWTTKMDHFLPKILVKQVKEGNRVDGTWTPAAYTAA 68
           MY KV+       SYN K++  Y+ WT++MD  L +ILV++VK+GN++D T  PAAY AA
Sbjct: 1   MYHKVY----ETRSYNAKDKVKYMAWTSEMDRCLTEILVEEVKKGNKIDSTLKPAAYRAA 60

Query: 69  LQVLNENFGGGLTKEHVRSRLKTWKKQFRILKELLAHKGFEWDEAQ 115
           L  LNENFG  LTKEH+R+RLKTW+KQF ILKELLAHKGF+WDE +
Sbjct: 61  LTALNENFGLDLTKEHIRNRLKTWRKQFGILKELLAHKGFKWDETR 102

[Close]

BLAST of CcUC03G053640 vs. NCBI nr
Match: XP_023877154.1 (uncharacterized protein LOC111989590 [Quercus suber])

HSP 1 Score: 132.1 bits (331), Expect = 3.0e-27
Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 9   MYQKVHLPGSLPGSYNRKERQNYLVWTTKMDHFLPKILVKQVKEGNRVDGTWTPAAYTAA 68
           MY KV+       SYN K++  Y+ WT++MD  L +ILV++VK+GN++D T  PAAY AA
Sbjct: 1   MYHKVY----ETRSYNAKDKVKYMAWTSEMDRCLAEILVEEVKKGNKIDSTLKPAAYRAA 60

Query: 69  LQVLNENFGGGLTKEHVRSRLKTWKKQFRILKELLAHKGFEWDEAQ 115
           L  LNENFG  LTKEH+R+RLKTW+KQF ILKELLAH+GF+W+E +
Sbjct: 61  LTTLNENFGLDLTKEHIRNRLKTWRKQFGILKELLAHEGFKWNETR 102

[Close]

BLAST of CcUC03G053640 vs. NCBI nr
Match: KAF7815604.1 (L10-interacting MYB domain-containing protein-like isoform X4 [Senna tora])

HSP 1 Score: 124.8 bits (312), Expect = 4.8e-25
Identity = 57/93 (61.29%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 22  SYNRKERQNYLVWTTKMDHFLPKILVKQVKEGNRVDGTWTPAAYTAALQVLNENFGGGLT 81
           S N KE+  +++WT +MD+ L KIL +QVK+GN+VD    P A+ AAL+ LNE F   LT
Sbjct: 7   SSNGKEKVKHMMWTAEMDNCLTKILAEQVKKGNKVDNILKPVAFAAALKELNEKFSLDLT 66

Query: 82  KEHVRSRLKTWKKQFRILKELLAHKGFEWDEAQ 115
           K+H+++RLKTW+KQF ILKELLAHKGFEWDEAQ
Sbjct: 67  KDHIKNRLKTWRKQFGILKELLAHKGFEWDEAQ 99

[Close]

BLAST of CcUC03G053640 vs. ExPASy TrEMBL
Match: A0A0A0LZX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629700 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.0e-40
Identity = 83/106 (78.30%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 9   MYQKVHLPGSLPGSYNRKERQNYLVWTTKMDHFLPKILVKQVKEGNRVDGTWTPAAYTAA 68
           MYQK++LPGSLPGS NRKERQNYL+WTTKMDH L   LV+Q KEG++VDG W P    AA
Sbjct: 1   MYQKLYLPGSLPGSCNRKERQNYLLWTTKMDHLLATTLVEQEKEGSKVDGAWKPVE-CAA 60

Query: 69  LQVLNENFGGGLTKEHVRSRLKTWKKQFRILKELLAHKGFEWDEAQ 115
           LQVLNEN G GLTKEHVRSRLKTWKK+F ILKELLAHKGFEWDEA+
Sbjct: 61  LQVLNENLGDGLTKEHVRSRLKTWKKRFHILKELLAHKGFEWDEAK 105

[Close]

BLAST of CcUC03G053640 vs. ExPASy TrEMBL
Match: A0A7N2KMQ1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.3e-28
Identity = 64/106 (60.38%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 9   MYQKVHLPGSLPGSYNRKERQNYLVWTTKMDHFLPKILVKQVKEGNRVDGTWTPAAYTAA 68
           MY KV+       SYN K++  Y+ WT++MD  L +ILV++VK+GN++D T  PAAY AA
Sbjct: 1   MYHKVY----ETRSYNAKDKVKYMAWTSEMDRCLTEILVEEVKKGNKIDSTLKPAAYRAA 60

Query: 69  LQVLNENFGGGLTKEHVRSRLKTWKKQFRILKELLAHKGFEWDEAQ 115
           L  LNENFG  LTKEH+R+RLKTW+KQF ILKELLAHKGF+WDE +
Sbjct: 61  LTALNENFGLDLTKEHIRNRLKTWRKQFGILKELLAHKGFKWDETR 102

[Close]

BLAST of CcUC03G053640 vs. ExPASy TrEMBL
Match: A0A2N9FX33 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19734 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.0e-28
Identity = 64/106 (60.38%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 9   MYQKVHLPGSLPGSYNRKERQNYLVWTTKMDHFLPKILVKQVKEGNRVDGTWTPAAYTAA 68
           MY KV+       SYN KE+  Y+ WT++MD  L +ILV++VK+GN++D T+ PAAY AA
Sbjct: 1   MYHKVY----ETRSYNAKEKVKYMAWTSEMDRCLTEILVEEVKKGNKIDSTFKPAAYRAA 60

Query: 69  LQVLNENFGGGLTKEHVRSRLKTWKKQFRILKELLAHKGFEWDEAQ 115
           +  L E FG  LTKEHVR+RLKTWKKQF ILKELLAHKGF+WDE +
Sbjct: 61  ITALKEKFGLELTKEHVRNRLKTWKKQFGILKELLAHKGFKWDETR 102

[Close]

BLAST of CcUC03G053640 vs. ExPASy TrEMBL
Match: A0A2I4E3H1 (L10-interacting MYB domain-containing protein-like OS=Juglans regia OX=51240 GN=LOC108985920 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.0e-24
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 32  LVWTTKMDHFLPKILVKQVKEGNRVDGTWTPAAYTAALQVLNENFGGGLTKEHVRSRLKT 91
           + WT++MD  L  ILV+QVK+GNR+DGT   AAY AAL+ LNENFG  LTK H+++RLKT
Sbjct: 1   MAWTSEMDRCLSDILVEQVKKGNRIDGTLKAAAYRAALKALNENFGLDLTKGHIQNRLKT 60

Query: 92  WKKQFRILKELLAHKGFEWDEAQ 115
           WKKQF ILKELL+HKGF WDE Q
Sbjct: 61  WKKQFGILKELLSHKGFRWDETQ 83

[Close]

BLAST of CcUC03G053640 vs. ExPASy TrEMBL
Match: A0A392NE01 (Myb/SANT-like DNA-binding domain protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.7e-23
Identity = 58/116 (50.00%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 2   YH---CEFSAMYQKVHLPGSLPGSYNRKERQNYLVWTTKMDHFLPKILVKQVKEGNRVDG 61
           YH   C FS M+ KV+   S        +R  Y VWT++MD  L  +LV+QV++GN+VD 
Sbjct: 12  YHSVLCGFSGMHPKVYKTRSSTAI----DRGKYTVWTSEMDSCLTDVLVEQVEKGNKVDN 71

Query: 62  TWTPAAYTAALQVLNENFGGGLTKEHVRSRLKTWKKQFRILKELLAHKGFEWDEAQ 115
              PAA+ AAL+ LNE FG  +TK H+++RLKTW+KQF +LKELLAH+GF W++ Q
Sbjct: 72  ILKPAAFAAALKALNEKFGMHMTKGHIKNRLKTWRKQFGVLKELLAHRGFVWNKTQ 123

[Close]

BLAST of CcUC03G053640 vs. TAIR 10
Match: AT4G02550.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 350 Blast hits to 284 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 331; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 7.7e-13
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 26  KERQNYLVWTTKMDHFLPKILVKQVKEGNRVDGTWTPAAYTAALQVLNENFGGGLTKEHV 85
           K +   ++W+  MD  L + L  Q K GN+VD  +   AYTAA   +N  F   LT +  
Sbjct: 14  KHKGRNVIWSVGMDKCLIEALAVQAKNGNKVDKCFNDKAYTAACVAVNTRFNLNLTSQKA 73

Query: 86  RSRLKTWKKQFRILKELLAHKGFEWDEA 114
            +RLKT KK++R+++++L+  GF W+ +
Sbjct: 74  INRLKTIKKRYRVMRDILSRDGFWWNSS 101

[Close]

BLAST of CcUC03G053640 vs. TAIR 10
Match: AT4G02550.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 370 Blast hits to 300 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 354; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 7.7e-13
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 26  KERQNYLVWTTKMDHFLPKILVKQVKEGNRVDGTWTPAAYTAALQVLNENFGGGLTKEHV 85
           K +   ++W+  MD  L + L  Q K GN+VD  +   AYTAA   +N  F   LT +  
Sbjct: 14  KHKGRNVIWSVGMDKCLIEALAVQAKNGNKVDKCFNDKAYTAACVAVNTRFNLNLTSQKA 73

Query: 86  RSRLKTWKKQFRILKELLAHKGFEWDEA 114
            +RLKT KK++R+++++L+  GF W+ +
Sbjct: 74  INRLKTIKKRYRVMRDILSRDGFWWNSS 101

[Close]

BLAST of CcUC03G053640 vs. TAIR 10
Match: AT4G02550.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 7.7e-13
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 26  KERQNYLVWTTKMDHFLPKILVKQVKEGNRVDGTWTPAAYTAALQVLNENFGGGLTKEHV 85
           K +   ++W+  MD  L + L  Q K GN+VD  +   AYTAA   +N  F   LT +  
Sbjct: 29  KHKGRNVIWSVGMDKCLIEALAVQAKNGNKVDKCFNDKAYTAACVAVNTRFNLNLTSQKA 88

Query: 86  RSRLKTWKKQFRILKELLAHKGFEWDEA 114
            +RLKT KK++R+++++L+  GF W+ +
Sbjct: 89  INRLKTIKKRYRVMRDILSRDGFWWNSS 116

[Close]

BLAST of CcUC03G053640 vs. TAIR 10
Match: AT4G02550.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2). )

HSP 1 Score: 70.9 bits (172), Expect = 7.7e-13
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 26  KERQNYLVWTTKMDHFLPKILVKQVKEGNRVDGTWTPAAYTAALQVLNENFGGGLTKEHV 85
           K +   ++W+  MD  L + L  Q K GN+VD  +   AYTAA   +N  F   LT +  
Sbjct: 14  KHKGRNVIWSVGMDKCLIEALAVQAKNGNKVDKCFNDKAYTAACVAVNTRFNLNLTSQKA 73

Query: 86  RSRLKTWKKQFRILKELLAHKGFEWDEA 114
            +RLKT KK++R+++++L+  GF W+ +
Sbjct: 74  INRLKTIKKRYRVMRDILSRDGFWWNSS 101

[Close]

BLAST of CcUC03G053640 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 8.0e-10
Identity = 29/90 (32.22%), Postives = 47/90 (52.22%), Query Frame = 0


Query: 22  SYNRKERQNYLVWTTKMDHFLPKILVKQVKEGNRVDGTWTPAAYTAALQVLNENFGGGLT 81
           S  +   +  + WT  MD+ L  +LV+QV  GNRV  T+  +A+   +   N  FG    
Sbjct: 315 SQEQNSDRTRIFWTPPMDYHLIDLLVEQVNNGNRVGQTFITSAWNEMVTAFNAKFGSQHN 374

Query: 82  KEHVRSRLKTWKKQFRILKELLAHKGFEWD 112
           K+ +++R K  ++ +  +K LL   GF WD
Sbjct: 375 KDVLKNRYKHLRRLYNDIKFLLEQNGFSWD 404

The following BLAST results are available for this feature:

BLAST of CcUC03G053640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031736187.1	4.1e-40	78.30	uncharacterized protein At2g29880 [Cucumis sativus] >KGN66564.1 hypothetical pro...	[more]
KAF3973412.1	5.5e-29	58.04	hypothetical protein CMV_003146 [Castanea mollissima]	[more]
XP_030959168.1	2.7e-28	60.38	uncharacterized protein LOC115981123 [Quercus lobata]	[more]
XP_023877154.1	3.0e-27	58.49	uncharacterized protein LOC111989590 [Quercus suber]	[more]
KAF7815604.1	4.8e-25	61.29	L10-interacting MYB domain-containing protein-like isoform X4 [Senna tora]	[more]

BLAST of CcUC03G053640 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC03G053640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZX0	2.0e-40	78.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629700 PE=4 SV=1	[more]
A0A7N2KMQ1	1.3e-28	60.38	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2N9FX33	5.0e-28	60.38	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19734 PE=4 SV=1	[more]
A0A2I4E3H1	2.0e-24	67.47	L10-interacting MYB domain-containing protein-like OS=Juglans regia OX=51240 GN=...	[more]
A0A392NE01	1.7e-23	50.00	Myb/SANT-like DNA-binding domain protein (Fragment) OS=Trifolium medium OX=97028...	[more]

BLAST of CcUC03G053640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02550.2	7.7e-13	36.36	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02550.1	7.7e-13	36.36	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02550.3	7.7e-13	36.36	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02550.4	7.7e-13	36.36	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.1	8.0e-10	32.22	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 34..113 e-value: 2.5E-18 score: 66.8
None	No IPR available	PANTHER	PTHR46929	EXPRESSED PROTEIN	coord: 19..114
None	No IPR available	PANTHER	PTHR46929:SF12	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 19..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC03G053640.1	CcUC03G053640.1	mRNA