CcUC03G052200 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC03G052200
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionCCHC-type domain-containing protein
LocationCicolChr03: 16476168 .. 16476486 (+)
RNA-Seq ExpressionCcUC03G052200
SyntenyCcUC03G052200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGAAGGAGTACCACAAGTATAAGATCCTAATATGGCTATTCTTCAAGCCATTCGAGGTATGTTGGAAATGATGATAGAAGAATCGCAAGAAAGGAGAACACAACAATAAAGAGAAGAACGAGCCTTGCAAGAAGTTGATGGAACAAGAAAGACAAGTTGGAGGAAGAGGAAACATGAGAGGAAGAGGAAGAAATATTTTTGTGCAAGCTAGAAGAGGAGAAAGAATTCATGAAGATAAAGATAGCAGAGTTAAGCTCAAATTTTGCCCTTTCATGGAACGACGGACGCAGAGGCATATTTGGAATGGGAAAGAAACA

mRNA sequence

GATGAAGGAGTACCACAAGTATAAGATCCTAATATGGCTATTCTTCAAGCCATTCGAGAAGAATCGCAAGAAAGGAGAACACAACAATAAAGAGAAGAACGAGCCTTGCAAGAAGTTGATGGAACAAGAAAGACAAGTTGGAGGAAGAGGAAACATGAGAGGAAGAGGAAGAAATATTTTTGTGCAAGCTAGAAGAGGAGAAAGAATTCATGAAGATAAAGATAGCAGAGTTAAGCTCAAATTTTGCCCTTTCATGGAACGACGGACGCAGAGGCATATTTGGAATGGGAAAGAAACA

Coding sequence (CDS)

ATGAAGGAGTACCACAAGTATAAGATCCTAATATGGCTATTCTTCAAGCCATTCGAGAAGAATCGCAAGAAAGGAGAACACAACAATAAAGAGAAGAACGAGCCTTGCAAGAAGTTGATGGAACAAGAAAGACAAGTTGGAGGAAGAGGAAACATGAGAGGAAGAGGAAGAAATATTTTTGTGCAAGCTAGAAGAGGAGAAAGAATTCATGAAGATAAAGATAGCAGAGTTAAGCTCAAATTTTGCCCTTTCATGGAACGACGGACGCAGAGGCATATTTGGAATGGGAAAGAAACA

Protein sequence

MKEYHKYKILIWLFFKPFEKNRKKGEHNNKEKNEPCKKLMEQERQVGGRGNMRGRGRNIFVQARRGERIHEDKDSRVKLKFCPFMERRTQRHIWNGKET
Homology
BLAST of CcUC03G052200 vs. NCBI nr
Match: XP_038902315.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120088948 [Benincasa hispida])

HSP 1 Score: 60.5 bits (145), Expect = 9.7e-06
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 0

Query: 20 KNRKKGEHNNKEKNEPCKKLMEQERQVGGRGNMRGRGRNIFVQARRGERIHEDKDSRVKL 79
          + R+  +    +++E    L+EQERQ+ G+GNMRG+GRN  +  RRGERIHED+DS VKL
Sbjct: 33 QERRAQQQRVSQEDEGVIDLVEQERQLRGKGNMRGKGRN-NMHPRRGERIHEDRDSGVKL 92

Query: 80 KFCPF 85
          K  PF
Sbjct: 93 KIPPF 96

BLAST of CcUC03G052200 vs. NCBI nr
Match: KAA0042451.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-05
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 31 EKNEPCKKLMEQERQVGGRGNMRGRGRNIF---VQARRGERIHEDKDSRVKLKFCPF 85
          ++NE    L   ERQ+GGRGN+RGRGRN     +Q RR ER+HED+D  VKLK  PF
Sbjct: 24 QENEGMFDLNAHERQLGGRGNVRGRGRNNLANVIQPRRMERVHEDRDGGVKLKIPPF 80

BLAST of CcUC03G052200 vs. NCBI nr
Match: TYK08101.1 (uncharacterized protein E5676_scaffold265G002620 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 8.2e-05
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 31 EKNEPCKKLMEQERQVGGRGNMRGRGRNIF---VQARRGERIHEDKDSRVKLKFCPF 85
          ++NE    L   ERQ+GGRGN+RGRGRN     +Q RR ER+HED+D  VKLK  PF
Sbjct: 24 QENEGMFDLNAHERQLGGRGNVRGRGRNNLANVMQPRRMERVHEDRDGGVKLKIPPF 80

BLAST of CcUC03G052200 vs. NCBI nr
Match: TYK21797.1 (uncharacterized protein E5676_scaffold991G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 31  EKNEPCKKLMEQERQVGGRGNMRGRGRNIFV---QARRGERIHEDKDSRVKLKFCPF 85
           +++E    L   ERQ+GGRGNMRGRGRN  V   Q RR E++HED+D  VKLK  PF
Sbjct: 48  QEDEGMFDLNAHERQLGGRGNMRGRGRNNLVNVMQPRRMEKVHEDRDGGVKLKIPPF 104

BLAST of CcUC03G052200 vs. NCBI nr
Match: KAA0047357.1 (uncharacterized protein E6C27_scaffold754G00030 [Cucumis melo var. makuwa] >TYK14035.1 uncharacterized protein E5676_scaffold363G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 22 RKKGEHNNKEKNEPCKKLMEQERQVGGRGNMRGRGRNIFVQARRGERIHEDKDSRVKLKF 81
          +++ E    +++E    L+EQERQVGGR NMRG+GRN  +Q RR ER  ED+ + +KLK 
Sbjct: 24 QQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKI 83

Query: 82 CPF 85
           PF
Sbjct: 84 PPF 86

BLAST of CcUC03G052200 vs. ExPASy TrEMBL
Match: A0A5A7TLJ3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8446G00010 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-05
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 31 EKNEPCKKLMEQERQVGGRGNMRGRGRNIF---VQARRGERIHEDKDSRVKLKFCPF 85
          ++NE    L   ERQ+GGRGN+RGRGRN     +Q RR ER+HED+D  VKLK  PF
Sbjct: 24 QENEGMFDLNAHERQLGGRGNVRGRGRNNLANVIQPRRMERVHEDRDGGVKLKIPPF 80

BLAST of CcUC03G052200 vs. ExPASy TrEMBL
Match: A0A5D3C8C6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002620 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.0e-05
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 31 EKNEPCKKLMEQERQVGGRGNMRGRGRNIF---VQARRGERIHEDKDSRVKLKFCPF 85
          ++NE    L   ERQ+GGRGN+RGRGRN     +Q RR ER+HED+D  VKLK  PF
Sbjct: 24 QENEGMFDLNAHERQLGGRGNVRGRGRNNLANVMQPRRMERVHEDRDGGVKLKIPPF 80

BLAST of CcUC03G052200 vs. ExPASy TrEMBL
Match: A0A5D3DDM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00010 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.2e-05
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 31  EKNEPCKKLMEQERQVGGRGNMRGRGRNIFV---QARRGERIHEDKDSRVKLKFCPF 85
           +++E    L   ERQ+GGRGNMRGRGRN  V   Q RR E++HED+D  VKLK  PF
Sbjct: 48  QEDEGMFDLNAHERQLGGRGNMRGRGRNNLVNVMQPRRMEKVHEDRDGGVKLKIPPF 104

BLAST of CcUC03G052200 vs. ExPASy TrEMBL
Match: A0A5A7TZH9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00030 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 22 RKKGEHNNKEKNEPCKKLMEQERQVGGRGNMRGRGRNIFVQARRGERIHEDKDSRVKLKF 81
          +++ E    +++E    L+EQERQVGGR NMRG+GRN  +Q RR ER  ED+ + +KLK 
Sbjct: 24 QQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKI 83

Query: 82 CPF 85
           PF
Sbjct: 84 PPF 86

BLAST of CcUC03G052200 vs. ExPASy TrEMBL
Match: A0A1S4E1G3 (uncharacterized protein LOC107991521 OS=Cucumis melo OX=3656 GN=LOC107991521 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 22 RKKGEHNNKEKNEPCKKLMEQERQVGGRGNMRGRGRNIFVQARRGERIHEDKDSRVKLKF 81
          +++ E    +++E    L+EQERQVGGR NMRG+GRN  +Q RR ER  ED+ + +KLK 
Sbjct: 24 QQQREERVLQEDEEVIDLVEQERQVGGRENMRGKGRNNLMQPRRLERFDEDRGNGIKLKI 83

Query: 82 CPF 85
           PF
Sbjct: 84 PPF 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038902315.19.7e-0652.31LOW QUALITY PROTEIN: uncharacterized protein LOC120088948 [Benincasa hispida][more]
KAA0042451.14.8e-0556.14reverse transcriptase [Cucumis melo var. makuwa][more]
TYK08101.18.2e-0556.14uncharacterized protein E5676_scaffold265G002620 [Cucumis melo var. makuwa][more]
TYK21797.11.1e-0456.14uncharacterized protein E5676_scaffold991G00010 [Cucumis melo var. makuwa][more]
KAA0047357.11.8e-0449.21uncharacterized protein E6C27_scaffold754G00030 [Cucumis melo var. makuwa] >TYK1... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TLJ32.3e-0556.14Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84... [more]
A0A5D3C8C64.0e-0556.14CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3DDM55.2e-0556.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TZH98.8e-0549.21Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S4E1G38.8e-0549.21uncharacterized protein LOC107991521 OS=Cucumis melo OX=3656 GN=LOC107991521 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC03G052200.1CcUC03G052200.1mRNA