CcUC03G052200 (gene) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GATGAAGGAGTACCACAAGTATAAGATCCTAATATGGCTATTCTTCAAGCCATTCGAGGTATGTTGGAAATGATGATAGAAGAATCGCAAGAAAGGAGAACACAACAATAAAGAGAAGAACGAGCCTTGCAAGAAGTTGATGGAACAAGAAAGACAAGTTGGAGGAAGAGGAAACATGAGAGGAAGAGGAAGAAATATTTTTGTGCAAGCTAGAAGAGGAGAAAGAATTCATGAAGATAAAGATAGCAGAGTTAAGCTCAAATTTTGCCCTTTCATGGAACGACGGACGCAGAGGCATATTTGGAATGGGAAAGAAACA GATGAAGGAGTACCACAAGTATAAGATCCTAATATGGCTATTCTTCAAGCCATTCGAGAAGAATCGCAAGAAAGGAGAACACAACAATAAAGAGAAGAACGAGCCTTGCAAGAAGTTGATGGAACAAGAAAGACAAGTTGGAGGAAGAGGAAACATGAGAGGAAGAGGAAGAAATATTTTTGTGCAAGCTAGAAGAGGAGAAAGAATTCATGAAGATAAAGATAGCAGAGTTAAGCTCAAATTTTGCCCTTTCATGGAACGACGGACGCAGAGGCATATTTGGAATGGGAAAGAAACA ATGAAGGAGTACCACAAGTATAAGATCCTAATATGGCTATTCTTCAAGCCATTCGAGAAGAATCGCAAGAAAGGAGAACACAACAATAAAGAGAAGAACGAGCCTTGCAAGAAGTTGATGGAACAAGAAAGACAAGTTGGAGGAAGAGGAAACATGAGAGGAAGAGGAAGAAATATTTTTGTGCAAGCTAGAAGAGGAGAAAGAATTCATGAAGATAAAGATAGCAGAGTTAAGCTCAAATTTTGCCCTTTCATGGAACGACGGACGCAGAGGCATATTTGGAATGGGAAAGAAACA MKEYHKYKILIWLFFKPFEKNRKKGEHNNKEKNEPCKKLMEQERQVGGRGNMRGRGRNIFVQARRGERIHEDKDSRVKLKFCPFMERRTQRHIWNGKET Homology
BLAST of CcUC03G052200 vs. NCBI nr
Match: XP_038902315.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120088948 [Benincasa hispida]) HSP 1 Score: 60.5 bits (145), Expect = 9.7e-06 Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 0
BLAST of CcUC03G052200 vs. NCBI nr
Match: KAA0042451.1 (reverse transcriptase [Cucumis melo var. makuwa]) HSP 1 Score: 58.2 bits (139), Expect = 4.8e-05 Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0
BLAST of CcUC03G052200 vs. NCBI nr
Match: TYK08101.1 (uncharacterized protein E5676_scaffold265G002620 [Cucumis melo var. makuwa]) HSP 1 Score: 57.4 bits (137), Expect = 8.2e-05 Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0
BLAST of CcUC03G052200 vs. NCBI nr
Match: TYK21797.1 (uncharacterized protein E5676_scaffold991G00010 [Cucumis melo var. makuwa]) HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04 Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0
BLAST of CcUC03G052200 vs. NCBI nr
Match: KAA0047357.1 (uncharacterized protein E6C27_scaffold754G00030 [Cucumis melo var. makuwa] >TYK14035.1 uncharacterized protein E5676_scaffold363G00030 [Cucumis melo var. makuwa]) HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04 Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0
BLAST of CcUC03G052200 vs. ExPASy TrEMBL
Match: A0A5A7TLJ3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8446G00010 PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 2.3e-05 Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0
BLAST of CcUC03G052200 vs. ExPASy TrEMBL
Match: A0A5D3C8C6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002620 PE=4 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 4.0e-05 Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0
BLAST of CcUC03G052200 vs. ExPASy TrEMBL
Match: A0A5D3DDM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00010 PE=4 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 5.2e-05 Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 0
BLAST of CcUC03G052200 vs. ExPASy TrEMBL
Match: A0A5A7TZH9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00030 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05 Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0
BLAST of CcUC03G052200 vs. ExPASy TrEMBL
Match: A0A1S4E1G3 (uncharacterized protein LOC107991521 OS=Cucumis melo OX=3656 GN=LOC107991521 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05 Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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