CcUC03G051660 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC03G051660
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description30S ribosomal protein S13, chloroplastic-like
LocationCicolChr03: 12312440 .. 12319000 (+)
RNA-Seq ExpressionCcUC03G051660
SyntenyCcUC03G051660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGGCCTTCATGTGGCCGAAGAATAGTTAGGTTCTCTCCTTCGCCGTCTGAAATCATTCTTCCGCTTCACTGAAACCCTCCGCCTTGTAAGATGTTCGGAGTTCGTCGTTCCCTCGGGATTTTCTCTAATGCTCTTCCTCATCGCTTCCAATCACTATCAGTGAGTTCAATGATCTCACCTAATTATTTATTGCTTGCGATTTGACAAGAATTTTAGGGTTTAGGGCATGTGAACCTCGCGGAATTCGATTGATTCATTTCTCTTAGTTCTTTCCTGTATTTGGAGTTCACTGATTCAATTTGATTTCCATTTTATGCATTGGTCGCGTTAGAAGGTTTTAAATGTTTGTATGAGGTGAATTCATCCGCCGGATGATATGTGCAGTTCGAGTCGATCCATATAAGAGCAGGTATGGAGATTCCCGATGACAAGCCGCTCAAATTTGCGCTTCAGTACATTCATGGAATTGGCCAATCAAGAGCGAACCAAATTCTTGCTGAGCTTCACATGGAGAACAAGCTTGCCAAGGATTTGACTAAAAGAGAGCTGGTTGATCTTGCGGACGAAATTTCCAAGTACATGGTCGGACATGAGTTGGTAAATTAGTCTCTGTTTCTCTAACTTTCTTCCCATGAATTTTACACATATAGACAAGGCGTAACAGGATGTGTTTCTTGCAGGATAAATGTGTTAAGAAGGACATTGCTGTGTTGCAGAGCATTCGGTGCCACAGAGGGATTAGGCATGAGCAAGGATTACCATGTAGAGGCCAACGAACGAAGACCAATGCTAGGACTATGAAGTCGAACCAGATCCTTGTTGCTGGAAAGAAGAAAACTTCTCGTTGAACAAATGGTTTTGCAATTCCTCCTCTCTTTGTTGCATTGTGAACTGATTATAAACAAGTTTTTGGGGGTACATATCAGGATTTCCATCCAACTTCGATAATTTCTTTTGGTCTTTTTTCATACACCCAAACTGTGCAATTTTATTTATTGTGTAGTGAAGACTTCTTTATTAGATGGGGATGAATGGCCTTAGAAACGTTTCAAATGTTTGTAACCAATTAAGACTGCTCAATGATTTCATGTCCAACTCTTGTGTCTGTTCACCAAGTTAGTTAGTATATGGACTATAATAATGTCAAACTTTAGAATCAGTTGTTCTCTGTAAGATTATGATTATAAAAATTACAAAATCCATCTTTCAGTGAGAACAAACTGAAACTGATATAAATTTGAAAAATTGCATAAACCACCCTGAAGTATGAGGGTTGTTACAATCACACCCATGCACTTTTAATTTGATCAATTACCTCCTATGCTTTTTCAATGCTTGCAATCAACCCCTTTAATTAAATTAGGGTTTATTTGGGGAGGGGTGAATTTGTCAAATATATAAAAAAAAACATGAACTATTCCTTGCCAAATCATGGAGAATGAGGCAGCAGGCTCAACTGGGTTTTAACAAATAGCAATGAATTTTTTTCTAAATTACAAATTACAAACAATAGAAATCTAACTATCTAAAAACCCAAGAATATCAAAATACAACAAATAACCCACTGAAGCCATTTTGAAATTGAAGAAATAGAAATGTCAAAATACAACCAATATCAAAATCATTTAAGGCAAGGTTCAAAGACGACCAATGAAAGGAGCAGAAATGAAGAAAGGGAAATGTTTTTGCCTAATTTAAAAGCCACATAGCCCCATCGATGGAACTTGGAAGGTGAACAAATTTTCAGAAAATTGAAGACAAACACAAGAAGAGGCAACCGAAAACTTACATCAATGCTTCCAATCTTGGAACAGAAACAAAGATAAAAATAAAAAATAAAAAATAAAAAAAAAAAAAAACAGAGTGATTTTAAAGGGAAAAAAATAAATTTCGTGGGTTTCTCTATGATTTGTATTTCTGAAAAAAAAACTTTCAATCTGGCCTGCTTCGACCGTTCTTCAACACCTACCGTCCCTTCTTACTTCCATTGGTGCTTCGCAGGTCCAGTAAGTCCCCTTTGTTCTCTATCAATTTGGCCAAGGCTATTATCGCTTCGCTTCAACTCTATTTTTTAGGGTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTTTTTTTTTTTTTTTTTTTTTGGTTATAAGGACAAATTTGCCCCTCTCCCTAATTTAAGTAAGGAGGTTGATTGCAACCATTAAAAAAGTATAGAAGAGTAATTGATCAAATTAAAAGTACATGGGTTATAACAAACTTCATACTTTAGTGGTGATTTATGCAATTTTTTCTATAAATAATGGATGCTGTTTTCTTTCTTCTTTCTTTTCAACAGCAAGTTAGCAAGTTGTTTAGAAAATTAGTCGAAATTTGCATAAATTAGTCGAACACTCACATATATATTAAAAAAAAAAAAAAAAGGAGTCAGCAGAAAATAGGTTTAAAATAAAGTCTACTTTGATTCCACGTTTTCAACATAGAATAAAAAAGAGAGGGATTCTTTGGCTTATGATTACAGCTGTCATTTTTCTTCTATATGGGTGGAGAGGTCCGAATCTTTTTTGGTCAGGGCACTTTGGTTAATTGGAATCCCTAATTGGAGACAAATTTTACTGCATACAACGTATAAGAGTTATTCAACAGTAGCAGACAAAGGGGATGGAATGTTTGATTAATTGGAATTATTGGTTTTTTCTTGGGACATCTTCACACAACTTTACCAATGATTTCAACAGAAGAGGTATGTATTGCTCAGCACCGGTAAACTCTATAATTTGACCTCACACACAATTCAAACAATATCTACGAAAATAATAATAATAACAATTAGTTAAAACTTGAAGATTTCTTTTAGGATTCGGATTAAACATTAGGATATATAACTACGTAAACTATATAGCACCGTTAAACTATATATTTCACAAATGTTAATTTTGAAAAAATTTTTAGCTTTTACATAGCTCTGTACGTATTTTTATTCCAAATTTACCCTTAAGTTGATTTTTATATTTGAATGGTATAATTGGATTGTTTTTTTCATGTTTAAATATTCATATTTTATTTTAGTATTTGACAACAATAATAGATAATTATTTTTCTTAATCATCTCTTTGTCCTATAATTTATATATATGTATTTTTAATCTAGTGTAATTTATGTATATTATTTTTCTACGTTGTTGATTTCTATATATATATATATATATATATATGCATTTGTATATTATATTGATTGCACTATTAATTAAATAAAAGTGAAATATTAAAGCCTCATTTGATAACCATTTGATTTTTTTGTTTGTTTTTAAAATTAAGTTTATAAACGCTCCTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTATATATATGAATCAAACATATATACTAAGCCTTTTTGTTTTCAATTTAGATTATATAGCTTATATTATCAAATATACTCCACATCTATGAAATACAAACCTAGAATGATACAATAATACATATCTCACATTATTAAATATATTTCATATTTATGAATATAAACATGAAATGAAACAATAATATATACCTCATATTATTAAATTTCACTAACATCTTATAAAACATAAACCTAGAATAAAACAATAATATACGTCTTATAAACGCATAATGTAATAAATATATTAAAGCATCAAATATAAAACTACTCTCGTAAAATTAAGAGAAAAGGAGAATAACTTTCTATTATGCCCATGTGGTAATTTTGTAATTAAATTTAAAAAGTTAGATAAAGAAAAAATAAATAAAAGGGTTATATTTCCATAATGGTTGACTTTTCTCTCTAACACTCTTTTATCTCCCCAATATATATATATATATATATATATATATATATATATTAACAAAAAAAATAAATAGTAGGTTTTTTTTATACTAAACCTACACGACAACTGAAGTGTTAACCCACTCTTGTAATATTAGGAAATTTAATTTTATCAATAGATATATTAGAAGTGTAGAGCATTAGAGGAAAAAATCAGCCTTATGGAAATAATAACCTATTTATTTTTTTCTTTATCCCAATTTTGGAATTTTAATAATAAAAACACTATATATTGTAAAAGTAATTTGAAATATAAGTTGGAGTTGAAATGACCTAACCATTGAAAAGCTGACAACTCCAAAGGGTCTTTTCAAGTGATATAAAGGAGAGGGAATAAAGTGTGGGGCTGATATTTTGTTGGGAATATTATTGGGCCAAGCCCAGTTTTAATTGGAGTAAAGGTTGGGGCTTTGAATTTGTTTGAGCTGGCCTTTATCCATATCCTTGGAGGAGGATGAAGAAGATAAGGTAGCTACTGAAACCGAAACCAGAGAGAGCCGCTGGGAGTCGAGTTGAACCGAATTGAAATCCCCTTCCTATTCCTAATGTGGTGATTGCTGTTTGTTGAAGTGAGAACTTGGAAAAGAGATAATGGCGCAGACTTTAGCAATGCCCCTCGCTCCTTCGCTTTCCGTTATCTGCAATGCTCGCAACTCCAATCCTCTCTCTAACACCCTCTCCTTTCCCATTTCAAACCCTCAGGTAAACTTTCTCTTCTTCCTACCCCCACTATGCCCTTCCTTTCTTCAATTTTACTCTCTTCCTTCCTTCAATTGCTTGGATTCTTCAATTTCCACTTCCTTCATTTCCTTTTGCTTTAATTTCATGCATTTTTTAGGTTGTGGAGGGATTTTAAACTATTATTACTTACCATACTCTCAACACTTTTCCCTTCATTCTTCCTCGTTTACAGTACTACACTTTATCCCTATTTGGAAGTAATTTATCTCTATCTTGATTGAACAGTGTTATGAAACCAAAGTTCTGCATTTCCTTTCCCTAACTGCTATTGTCTACAGGAATCGAACTCATGATCCTAAATCCAACCCCCCAAAAAATGAAATTATAATAATAAAATCCTTAATATTTGTCCCAGTTTCTCTCGCCCTGTCTGTGCATGATTGATTATAAAGATTAAGCAGATATAATTGGACTGAAAGAGGAGATTCTGCGGATTAATGGCTGACCTTAAATTGCAATTTGACACGCCAGTCTATGCTTGATGTTATCAAGTTGATCCTTGACGTATTGATATAATTAAATTTACCCAAATCCATTAGCATAGGATTTTGGGTTCATTGTTGAGTTAACAAGGATATTAGTGTAGGAGGTCTTGTATTTGTACTCTGTAAACTAATATTAATATTATCAATTAATATTGATTTTTACTTGTGGAACTTTTATAAATTTTCGAGGCCACGAGTAAGGAGGAATGAAGTGTTGATGTATCTAAATTTACTATAAGCTACTAGTTGAAGCTTTTTGGTGATCGTTGATTTAACAGAATTCTATCTCTTATTGAATGATCCCTCATTTTTCTTCCTCAATTTTGTTCAGGTCCGTGGTCTTCAAATCAAGTGTGTCCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATATTCCCTTCAATATATACATGGTATTGGTCGCAACAATGCTAAGAAGATATTGTTTGATCTAAACGTGGAGAATAAGATTACCAAGGACTTATCCGAGGAGGAACTAATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGGTCTCTCACTTTCTTTCTCCATGTGTGTGTGTGTGTTGAAATTACAAACGTTGGTTGTCTCTATACTTGTGTGAAGTGCTTACAAATAGCGATTGTTGGTTTTTGCAGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTACCGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGACAGCGAACGAAAAACAACTGCAGAACCTTGAAGGGTAAGAAGGTTGCTATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGTACTTGCAATCAAACCGAGTAAATCTCTTCTAAAAGTTTTGAGATGTATTGTCTTAACTCTGGAATTGCATCTAATTTCCTCATGGAAATATAGTTTCTTGCAAATACTGTGTTACTGCTGTGCCATATTCTACTTTACAGATGTGCTCACCCTCTTTAACAAATGCTCAATGTTCTCTGTATGTGCCCTCTTTCACGAATGCTCAATGTTCTCTAGAGAGTTAAGTATGTTAATGTATGCATGGGAGTTAATATAGTCGTTTCATAGATTTAAGTAGGGT

mRNA sequence

GCGGCCTTCATGTGGCCGAAGAATAGTTAGGTTCTCTCCTTCGCCGTCTGAAATCATTCTTCCGCTTCACTGAAACCCTCCGCCTTGTAAGATGTTCGGAGTTCGTCGTTCCCTCGGGATTTTCTCTAATGCTCTTCCTCATCGCTTCCAATCACTATCATTCGAGTCGATCCATATAAGAGCAGGTATGGAGATTCCCGATGACAAGCCGCTCAAATTTGCGCTTCAGTACATTCATGGAATTGGCCAATCAAGAGCGAACCAAATTCTTGCTGAGCTTCACATGGAGAACAAGCTTGCCAAGGATTTGACTAAAAGAGAGCTGGTTGATCTTGCGGACGAAATTTCCAAGTACATGGTCGGACATGAGTTGGATAAATGTGTTAAGAAGGACATTGCTGTGTTGCAGAGCATTCGGTGCCACAGAGGGATTAGGCATGAGCAAGGATTACCATGTAGAGGCCAACGAACGAAGACCAATGCTAGGACTATGAAGTCGAACCAGATCCTTGTTGCTGGAAAGAAGAAAACTTCTCAACTTGGAAAAGAGATAATGGCGCAGACTTTAGCAATGCCCCTCGCTCCTTCGCTTTCCGTTATCTGCAATGCTCGCAACTCCAATCCTCTCTCTAACACCCTCTCCTTTCCCATTTCAAACCCTCAGGTCCGTGGTCTTCAAATCAAGTGTGTCCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATATTCCCTTCAATATATACATGGTATTGGTCGCAACAATGCTAAGAAGATATTGTTTGATCTAAACGTGGAGAATAAGATTACCAAGGACTTATCCGAGGAGGAACTAATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTACCGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGACAGCGAACGAAAAACAACTGCAGAACCTTGAAGGGTAAGAAGGTTGCTATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGTACTTGCAATCAAACCGAGTAAATCTCTTCTAAAAGTTTTGAGATGTATTGTCTTAACTCTGGAATTGCATCTAATTTCCTCATGGAAATATAGTTTCTTGCAAATACTGTGTTACTGCTGTGCCATATTCTACTTTACAGATGTGCTCACCCTCTTTAACAAATGCTCAATGTTCTCTGTATGTGCCCTCTTTCACGAATGCTCAATGTTCTCTAGAGAGTTAAGTATGTTAATGTATGCATGGGAGTTAATATAGTCGTTTCATAGATTTAAGTAGGGT

Coding sequence (CDS)

ATGTTCGGAGTTCGTCGTTCCCTCGGGATTTTCTCTAATGCTCTTCCTCATCGCTTCCAATCACTATCATTCGAGTCGATCCATATAAGAGCAGGTATGGAGATTCCCGATGACAAGCCGCTCAAATTTGCGCTTCAGTACATTCATGGAATTGGCCAATCAAGAGCGAACCAAATTCTTGCTGAGCTTCACATGGAGAACAAGCTTGCCAAGGATTTGACTAAAAGAGAGCTGGTTGATCTTGCGGACGAAATTTCCAAGTACATGGTCGGACATGAGTTGGATAAATGTGTTAAGAAGGACATTGCTGTGTTGCAGAGCATTCGGTGCCACAGAGGGATTAGGCATGAGCAAGGATTACCATGTAGAGGCCAACGAACGAAGACCAATGCTAGGACTATGAAGTCGAACCAGATCCTTGTTGCTGGAAAGAAGAAAACTTCTCAACTTGGAAAAGAGATAATGGCGCAGACTTTAGCAATGCCCCTCGCTCCTTCGCTTTCCGTTATCTGCAATGCTCGCAACTCCAATCCTCTCTCTAACACCCTCTCCTTTCCCATTTCAAACCCTCAGGTCCGTGGTCTTCAAATCAAGTGTGTCCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATATTCCCTTCAATATATACATGGTATTGGTCGCAACAATGCTAAGAAGATATTGTTTGATCTAAACGTGGAGAATAAGATTACCAAGGACTTATCCGAGGAGGAACTAATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTACCGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGACAGCGAACGAAAAACAACTGCAGAACCTTGAAGGGTAAGAAGGTTGCTATTGCAGGGAAGAAGAAGGCTCCTCGTTGA

Protein sequence

MFGVRRSLGIFSNALPHRFQSLSFESIHIRAGMEIPDDKPLKFALQYIHGIGQSRANQILAELHMENKLAKDLTKRELVDLADEISKYMVGHELDKCVKKDIAVLQSIRCHRGIRHEQGLPCRGQRTKTNARTMKSNQILVAGKKKTSQLGKEIMAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Homology
[Close]
BLAST of CcUC03G051660 vs. NCBI nr
Match: XP_023550656.1 (30S ribosomal protein S13, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 541.2 bits (1393), Expect = 6.1e-150
Identity = 278/321 (86.60%), Postives = 301/321 (93.77%), Query Frame = 0 

Query: 1   MFGVRRSLGIFSNALPHRFQSLSFESIHIRAGMEIPDDKPLKFALQYIHGIGQSRANQIL 60
           MFGVRRSLGI SN L HRF+SLS ESIHI+AGMEIPD+KPLK+ALQYI+GIG+SRA Q+L
Sbjct: 1   MFGVRRSLGIVSNDLLHRFRSLSIESIHIKAGMEIPDNKPLKYALQYINGIGRSRAPQVL 60

Query: 61  AELHMENKLAKDLTKRELVDLADEISKYMVGHELDKCVKKDIAVLQSIRCHRGIRHEQGL 120
           AELH+ENKLAKDLTKRE+V LADEISKYMVGHEL+KCVKKDI  LQ+I+CHRGIRH +GL
Sbjct: 61  AELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGL 120

Query: 121 PCRGQRTKTNARTMKSNQILVAGKKKTSQLGKEIMAQTLAMPLAPSLSVICNARNSNPLS 180
           PCRGQRTKTNARTMKS QI  +GKKK S+  +EIMA TLA+P+APSLS+ICN+R SNPLS
Sbjct: 121 PCRGQRTKTNARTMKSKQI-GSGKKKASR-REEIMAHTLALPVAPSLSLICNSRTSNPLS 180

Query: 181 NTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENK 240
           N +SFPISNP+V GLQIKCVRVGGVEIPNNKRV YSLQYIHGIGRNNAKKILFDLNVENK
Sbjct: 181 NAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENK 240

Query: 241 ITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTK 300
           ITKDL+EEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTK
Sbjct: 241 ITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTK 300

Query: 301 NNCRTLKGKKVAIAGKKKAPR 322
           NNCRTLKGKKVAIAGKKKAPR
Sbjct: 301 NNCRTLKGKKVAIAGKKKAPR 319

[Close]
BLAST of CcUC03G051660 vs. NCBI nr
Match: KAG7016519.1 (30S ribosomal protein S13, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 540.4 bits (1391), Expect = 1.0e-149
Identity = 277/321 (86.29%), Postives = 300/321 (93.46%), Query Frame = 0 

Query: 1   MFGVRRSLGIFSNALPHRFQSLSFESIHIRAGMEIPDDKPLKFALQYIHGIGQSRANQIL 60
           MFGVRRSLG+ SN L HRF+SLS ESIHI+AG+EIPD+KPLK+ALQYI+GIG+SRA Q+L
Sbjct: 62  MFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVL 121

Query: 61  AELHMENKLAKDLTKRELVDLADEISKYMVGHELDKCVKKDIAVLQSIRCHRGIRHEQGL 120
           AELH+ENKLAKDLTKRE+V LADEISKYMVGHEL+KCVKKDI  LQ+I+CHRGIRH +GL
Sbjct: 122 AELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGL 181

Query: 121 PCRGQRTKTNARTMKSNQILVAGKKKTSQLGKEIMAQTLAMPLAPSLSVICNARNSNPLS 180
           PCRGQRTKTNARTMKS QI  +GKKK SQ   EIMA TLA+P+APSLS+ICN+R SNPLS
Sbjct: 182 PCRGQRTKTNARTMKSKQI-GSGKKKASQ---EIMAHTLALPVAPSLSLICNSRTSNPLS 241

Query: 181 NTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENK 240
           N +SFPISNP+V GLQIKCVRVGGVEIPNNKRV YSLQYIHGIGRNNAKKILFDLNVENK
Sbjct: 242 NAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENK 301

Query: 241 ITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTK 300
           ITKDL+EEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTK
Sbjct: 302 ITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTK 361

Query: 301 NNCRTLKGKKVAIAGKKKAPR 322
           NNCRTLKGKKVAIAGKKKAPR
Sbjct: 362 NNCRTLKGKKVAIAGKKKAPR 378

[Close]
BLAST of CcUC03G051660 vs. NCBI nr
Match: XP_022939154.1 (30S ribosomal protein S13, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 537.3 bits (1383), Expect = 8.8e-149
Identity = 275/321 (85.67%), Postives = 300/321 (93.46%), Query Frame = 0 

Query: 1   MFGVRRSLGIFSNALPHRFQSLSFESIHIRAGMEIPDDKPLKFALQYIHGIGQSRANQIL 60
           MFGVRRSLG+ SN L HRF+SLS  SIHI+AG+EIPD+KPLK+ALQYI+GIG+SRA Q+L
Sbjct: 1   MFGVRRSLGVVSNDLLHRFRSLSIASIHIKAGLEIPDNKPLKYALQYINGIGRSRAPQVL 60

Query: 61  AELHMENKLAKDLTKRELVDLADEISKYMVGHELDKCVKKDIAVLQSIRCHRGIRHEQGL 120
           AELH+ENKLAKDLTKRE+V LADEISKYMVGHEL+KCVKKDI  LQ+I+CHRGIRH +GL
Sbjct: 61  AELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGL 120

Query: 121 PCRGQRTKTNARTMKSNQILVAGKKKTSQLGKEIMAQTLAMPLAPSLSVICNARNSNPLS 180
           PCRGQRTKTNARTMKS QI  +GKKK S+  +EIMA TLA+P+APSLS+ICN+R SNPLS
Sbjct: 121 PCRGQRTKTNARTMKSKQI-GSGKKKASR-REEIMAHTLALPVAPSLSLICNSRTSNPLS 180

Query: 181 NTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENK 240
           N +SFPISNP+V GLQIKCVRVGGVEIPNNKRV YSLQYIHGIGRNNAKKILFDLNVENK
Sbjct: 181 NAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENK 240

Query: 241 ITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTK 300
           ITKDL+EEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTK
Sbjct: 241 ITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTK 300

Query: 301 NNCRTLKGKKVAIAGKKKAPR 322
           NNCRTLKGKKVAIAGKKKAPR
Sbjct: 301 NNCRTLKGKKVAIAGKKKAPR 319

[Close]
BLAST of CcUC03G051660 vs. NCBI nr
Match: XP_037492560.1 (uncharacterized protein LOC105638882 [Jatropha curcas])

HSP 1 Score: 379.8 bits (974), Expect = 2.3e-101
Identity = 210/345 (60.87%), Postives = 250/345 (72.46%), Query Frame = 0 

Query: 3   GVRRSLGIFSNALPHRFQSLSFESIHIR----AGMEIPDDKPLKFALQYIHGIGQSRANQ 62
           G R S+GI SN      Q+LSF    ++       EIP++K L++ALQ+I GIG+ RA++
Sbjct: 7   GSRGSVGILSNIGQSLLQNLSFRCQRVQCLRIGNAEIPNEKRLRYALQHIQGIGRQRAHK 66

Query: 63  ILAELHMENKLAKDLTKRELVDLADEISKYMVGHELDKCVKKDIAVLQSIRCHRGIRHEQ 122
           IL +L +ENK AKDLT  EL  L +E+SKY++G +L + VK DI  L  I+CHRG  H  
Sbjct: 67  ILVDLSLENKPAKDLTGFELHSLREEVSKYLIGDDLRRHVKADIERLVGIQCHRGFNHVC 126

Query: 123 GLPCRGQRTKTNARTMKSNQ--------ILVAGKKKTSQLGK-------------EIMAQ 182
            +PCRGQRTKTNART K  +         L    ++  + G+             E MAQ
Sbjct: 127 MMPCRGQRTKTNARTRKGQRRGNLDGRLSLAESIQRRQERGEVKLFAFKLLFQQIEKMAQ 186

Query: 183 TLAMPLAPSLSVICNARNSNPLSNTLSFPI-SNPQVRGLQIKCVRVGGVEIPNNKRVQYS 242
            LAMP+APSLSVICN R SN L   +S PI S P+V GL I+C RVGGVEIPNNKRV+YS
Sbjct: 187 ALAMPVAPSLSVICNNRRSNSLFAFVSLPIASPPKVHGLSIQCARVGGVEIPNNKRVEYS 246

Query: 243 LQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRR 302
           LQYIHGIGR+ A++IL DL+ ENKITKDLSEEELI++RDEVSKYMIEGDLRRFNAL IRR
Sbjct: 247 LQYIHGIGRSRARQILADLSFENKITKDLSEEELITLRDEVSKYMIEGDLRRFNALNIRR 306

Query: 303 LKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 322
           LKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGK+V +AGKKKAPR
Sbjct: 307 LKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKRVTVAGKKKAPR 351

[Close]
BLAST of CcUC03G051660 vs. NCBI nr
Match: XP_011027702.1 (PREDICTED: uncharacterized protein LOC105127921 [Populus euphratica])

HSP 1 Score: 357.8 bits (917), Expect = 9.5e-95
Identity = 208/401 (51.87%), Postives = 248/401 (61.85%), Query Frame = 0 

Query: 1   MFGVRRSLGIFSNALPHRFQSLSFESIHIR----AGMEIPDDKPLKFALQYIHGIGQSRA 60
           M G+R S+ + +       Q+ +F    ++       EIP+DK L+ ALQYIHGIG+ RA
Sbjct: 1   MLGLRGSVRLLTEVNQSLLQNATFRCQRVQGLRVGNTEIPNDKKLEVALQYIHGIGRKRA 60

Query: 61  NQILAELHMENKLAKDLTKRELVDLADEISKYMVGHELDKCVKKDIAVLQSIRCHRGIRH 120
           +QIL EL + NK  KDLT  EL  L +E+SKY+ G +L + VK D+  L  I C+RG RH
Sbjct: 61  HQILCELSLVNKPTKDLTGIELNSLREEVSKYLTGPDLARRVKADVQRLVDIECYRGYRH 120

Query: 121 EQGLPCRGQRTKTNARTMKSNQ-------------------------------------- 180
            +GLPCRGQRT TNART K +Q                                      
Sbjct: 121 VEGLPCRGQRTSTNARTRKEHQKYGSQEVAERIRKHQERNQAKWFHLNNLIDDGHYTELL 180

Query: 181 ------ILVAGKKKTSQ-------------------------------LGKEIMAQTLAM 240
                 IL    +K S                                L ++ MAQTLAM
Sbjct: 181 MVIILAILAKPMQKLSSTLRCGPRNMLSKLALDDASKSNNDCSTSKAALTEKKMAQTLAM 240

Query: 241 PLAPSLSVICNARNSNPLSNTLSFPISNPQVRG-LQIKCVRVGGVEIPNNKRVQYSLQYI 300
           P+ PSLS ICN   S  LSN++S PISNP   G L I+C RVGGVEIPNNKRV+YSLQYI
Sbjct: 241 PVVPSLSAICNGLKSTCLSNSISLPISNPPKAGSLSIRCARVGGVEIPNNKRVEYSLQYI 300

Query: 301 HGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEI 322
           HGIGR+ A++IL DL +ENKITKDLSE+ELI++RDEVSKYMIEGDLRRFNAL IRRLKEI
Sbjct: 301 HGIGRSIARQILSDLTMENKITKDLSEDELITLRDEVSKYMIEGDLRRFNALNIRRLKEI 360

[Close]
BLAST of CcUC03G051660 vs. ExPASy Swiss-Prot
Match: P42732 (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.5e-66
Identity = 129/169 (76.33%), Postives = 147/169 (86.98%), Query Frame = 0 

Query: 155 MAQTLAMPLAPSLSVICNARNSNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 214
           MAQ +AMP+A SLS+ICN   SNPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 215 VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNAL 274
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 275 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 322
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]
BLAST of CcUC03G051660 vs. ExPASy Swiss-Prot
Match: P82163 (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 PE=1 SV=3)

HSP 1 Score: 240.4 bits (612), Expect = 2.9e-62
Identity = 124/169 (73.37%), Postives = 147/169 (86.98%), Query Frame = 0 

Query: 155 MAQTLAMPLAPSLSVICNARNSNPL-SNTLSF-PISNPQVRGLQIKCVRVGGVEIPNNKR 214
           MA TLA P+APS+S+ICN + S  L S++L+F P++     GL IKCVRVG VEIPNNKR
Sbjct: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLAFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60

Query: 215 VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNAL 274
           V+YSLQYIHGIGR+ A++IL DL +ENK+TK+LSE+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120

Query: 275 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKKVAIAGKKKAP 321
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GK+V IAGKKK P
Sbjct: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPP 169

[Close]
BLAST of CcUC03G051660 vs. ExPASy Swiss-Prot
Match: Q9CA19 (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.7e-31
Identity = 70/148 (47.30%), Postives = 98/148 (66.22%), Query Frame = 0 

Query: 174 RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILF 233
           R++  L +     + N    GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L 
Sbjct: 6   RSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 234 DLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP 293
            L + NK+ +DL+ +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLP
Sbjct: 66  HLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLP 125

Query: 294 CRGQRTKNNCRTLKGKKVAIAGKKKAPR 322
           CRGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 126 CRGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]
BLAST of CcUC03G051660 vs. ExPASy Swiss-Prot
Match: Q8LPW2 (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP13 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.2e-30
Identity = 70/145 (48.28%), Postives = 97/145 (66.90%), Query Frame = 0 

Query: 1   MFGVRRSLGIFSNALPHRFQSLSFESIHIR-------AGMEIPDDKPLKFALQYIHGIGQ 60
           MFG  R   I S+      Q+LS   + ++        G EIPD+K L +ALQ +HGIG+
Sbjct: 1   MFGSAR---ILSDVTLRLRQNLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGR 60

Query: 61  SRANQILAELHMENKLAKDLTKRELVDLADEISKYMVGHELDKCVKKDIAVLQSIRCHRG 120
           S+A  I+AEL +ENK  KDL+KREL  + + +SKY++G++L KCV++D+  L  I+C+RG
Sbjct: 61  SKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRG 120

Query: 121 IRHEQGLPCRGQRTKTNARTMKSNQ 139
           IRH   LPCRGQRT TNART +S +
Sbjct: 121 IRHVDSLPCRGQRTHTNARTRRSRK 142

[Close]
BLAST of CcUC03G051660 vs. ExPASy Swiss-Prot
Match: B1VAC3 (30S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.7e-28
Identity = 63/119 (52.94%), Postives = 92/119 (77.31%), Query Frame = 0 

Query: 201 RVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENKI-TKDLSEEELISIRDEVSK 260
           R+ G++IP++KRV  +L YI+G+G+  ++KIL +LN+ + I  K+L+E++L S+R E++K
Sbjct: 3   RIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITK 62

Query: 261 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKK 319
           Y +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ+T+NN  T+KGK  +IAGKKK
Sbjct: 63  YSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK 121

[Close]
BLAST of CcUC03G051660 vs. ExPASy TrEMBL
Match: A0A6J1FGA3 (30S ribosomal protein S13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445150 PE=3 SV=1)

HSP 1 Score: 537.3 bits (1383), Expect = 4.2e-149
Identity = 275/321 (85.67%), Postives = 300/321 (93.46%), Query Frame = 0 

Query: 1   MFGVRRSLGIFSNALPHRFQSLSFESIHIRAGMEIPDDKPLKFALQYIHGIGQSRANQIL 60
           MFGVRRSLG+ SN L HRF+SLS  SIHI+AG+EIPD+KPLK+ALQYI+GIG+SRA Q+L
Sbjct: 1   MFGVRRSLGVVSNDLLHRFRSLSIASIHIKAGLEIPDNKPLKYALQYINGIGRSRAPQVL 60

Query: 61  AELHMENKLAKDLTKRELVDLADEISKYMVGHELDKCVKKDIAVLQSIRCHRGIRHEQGL 120
           AELH+ENKLAKDLTKRE+V LADEISKYMVGHEL+KCVKKDI  LQ+I+CHRGIRH +GL
Sbjct: 61  AELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGL 120

Query: 121 PCRGQRTKTNARTMKSNQILVAGKKKTSQLGKEIMAQTLAMPLAPSLSVICNARNSNPLS 180
           PCRGQRTKTNARTMKS QI  +GKKK S+  +EIMA TLA+P+APSLS+ICN+R SNPLS
Sbjct: 121 PCRGQRTKTNARTMKSKQI-GSGKKKASR-REEIMAHTLALPVAPSLSLICNSRTSNPLS 180

Query: 181 NTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENK 240
           N +SFPISNP+V GLQIKCVRVGGVEIPNNKRV YSLQYIHGIGRNNAKKILFDLNVENK
Sbjct: 181 NAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENK 240

Query: 241 ITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTK 300
           ITKDL+EEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTK
Sbjct: 241 ITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTK 300

Query: 301 NNCRTLKGKKVAIAGKKKAPR 322
           NNCRTLKGKKVAIAGKKKAPR
Sbjct: 301 NNCRTLKGKKVAIAGKKKAPR 319

[Close]
BLAST of CcUC03G051660 vs. ExPASy TrEMBL
Match: A0A498J382 (ABC transporter domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_037556 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.0e-94
Identity = 212/411 (51.58%), Postives = 242/411 (58.88%), Query Frame = 0 

Query: 19   FQSLSFESIHIRAGMEIPDDKPLKFALQYIHGIGQSRANQILAELHMENKLAKDLTKREL 78
            F  +  + ++IRAGMEIPD+KPLK+ALQYI GIG++RA  I++EL+M NK AKDLT+RE+
Sbjct: 673  FHGVRVQCLNIRAGMEIPDNKPLKYALQYIRGIGRARAGLIISELNMTNKRAKDLTRREV 732

Query: 79   VDLADEISKYMVGHELDKCVKKDIAVLQSIRCHRGIRHEQGLPCRGQRTKTNARTMKSN- 138
            V + DEISKY+VG EL   V++DI  ++ I+C++GIRH   LPCRGQRT TNART K+N 
Sbjct: 733  VAIGDEISKYLVGRELATIVERDIKRMKDIQCYKGIRHIDKLPCRGQRTSTNARTRKANP 792

Query: 139  QILVAGKKKT-------------------------------------------------- 198
            +I VA   K                                                   
Sbjct: 793  RIAVASSNKVKNKCLNNYPQSFTPPISLNLSNFYVKPTLGYYNLKNFLRSFFWFLFDLKL 852

Query: 199  ------------------------SQLGKE------------------------------ 258
                                    SQL +                               
Sbjct: 853  SRGTSTAPASAAPSSQTFPRETFLSQLNQNRSYLIQRCRNAAHILCCALEIWPEQDNLTP 912

Query: 259  ----------------IMAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNP-QVRGLQ 308
                            +MAQTLAMPLAPSL VICN RNSNPLSN LSFPI  P QV GL 
Sbjct: 913  SSSSTHKAHHSHNSDTVMAQTLAMPLAPSLYVICNGRNSNPLSNGLSFPIRPPNQVGGLS 972

[Close]
BLAST of CcUC03G051660 vs. ExPASy TrEMBL
Match: B9RJA5 (30S ribosomal protein S13, putative OS=Ricinus communis OX=3988 GN=RCOM_1032660 PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 7.9e-87
Identity = 183/333 (54.95%), Postives = 225/333 (67.57%), Query Frame = 0 

Query: 1   MFGVRRSLGI-----------FSNALPHRFQSLSFESIHIRAG-MEIPDDKPLKFALQYI 60
           MFG R S+G+            S  L  R+Q +      +R G  EIPDDK L+FALQ+I
Sbjct: 1   MFGSRGSIGLLTDIGHCVLKNLSTILQFRYQRVQC----LRVGNAEIPDDKQLRFALQHI 60

Query: 61  HGIGQSRANQILAELHMENKLAKDLTKRELVDLADEISKYMVGHELDKCVKKDIAVLQSI 120
            GIG+ RA+QIL +L +ENK  KDLT  EL  L +E+SKY++G EL +CV+ DI  L  I
Sbjct: 61  RGIGRQRAHQILIDLSLENKRTKDLTGLELHTLRNEVSKYLIGEELTRCVRSDIQRLADI 120

Query: 121 RCHRGIRHEQGLPCRGQRTKTNARTMKSNQILVAGKKKTSQLGKEIMAQTLAMPLAPSLS 180
           +C+RG  H   LPCRGQ T+TNART K  + L    ++++  G + +A            
Sbjct: 121 QCYRGYNHACLLPCRGQLTRTNARTRKGMRTL----ERSNWDGHQSLA------------ 180

Query: 181 VICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNA 240
                                  V GL I+C RVGGVEIPNNKR++YSLQYIHG+GR+ A
Sbjct: 181 -----------------------VHGLSIRCARVGGVEIPNNKRIEYSLQYIHGVGRSRA 240

Query: 241 KKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRH 300
           ++IL DL++ENKITK+LSEEELI++RDEVSKYMIEGDLRRFNAL IRRLKEIQCYRG+RH
Sbjct: 241 RQILSDLSMENKITKELSEEELITLRDEVSKYMIEGDLRRFNALNIRRLKEIQCYRGVRH 290

Query: 301 IQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 322
           IQGLPCRGQRTKNNCRTLKGK+V +AGKKK PR
Sbjct: 301 IQGLPCRGQRTKNNCRTLKGKRVTVAGKKKTPR 290

[Close]
BLAST of CcUC03G051660 vs. ExPASy TrEMBL
Match: A0A5A7TVL6 (30S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00390 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.3e-84
Identity = 162/170 (95.29%), Postives = 169/170 (99.41%), Query Frame = 0 

Query: 152 KEIMAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNK 211
           ++IMAQTLA+PLAPSLS+ICN+RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNK
Sbjct: 37  EDIMAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNK 96

Query: 212 RVQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNA 271
           RVQYSLQYIHGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNA
Sbjct: 97  RVQYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNA 156

Query: 272 LAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 322
           LAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 157 LAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 206

[Close]
BLAST of CcUC03G051660 vs. ExPASy TrEMBL
Match: A0A1S3CPR4 (30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 8.2e-84
Identity = 161/167 (96.41%), Postives = 166/167 (99.40%), Query Frame = 0 

Query: 155 MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 214
           MAQTLA+PLAPSLS+ICN+RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 215 YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 274
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 275 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 322
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]
BLAST of CcUC03G051660 vs. TAIR 10
Match: AT5G14320.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 253.8 bits (647), Expect = 1.8e-67
Identity = 129/169 (76.33%), Postives = 147/169 (86.98%), Query Frame = 0 

Query: 155 MAQTLAMPLAPSLSVICNARNSNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 214
           MAQ +AMP+A SLS+ICN   SNPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 215 VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNAL 274
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 275 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 322
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]
BLAST of CcUC03G051660 vs. TAIR 10
Match: AT5G14320.2 (Ribosomal protein S13/S18 family )

HSP 1 Score: 152.9 bits (385), Expect = 4.3e-37
Identity = 80/114 (70.18%), Postives = 94/114 (82.46%), Query Frame = 0 

Query: 155 MAQTLAMPLAPSLSVICNARNSNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 214
           MAQ +AMP+A SLS+ICN   SNPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 215 VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDL 267
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI +RDEVSKYMIEGDL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDL 114

[Close]
BLAST of CcUC03G051660 vs. TAIR 10
Match: AT1G77750.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-32
Identity = 70/148 (47.30%), Postives = 98/148 (66.22%), Query Frame = 0 

Query: 174 RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILF 233
           R++  L +     + N    GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L 
Sbjct: 6   RSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 234 DLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP 293
            L + NK+ +DL+ +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLP
Sbjct: 66  HLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLP 125

Query: 294 CRGQRTKNNCRTLKGKKVAIAGKKKAPR 322
           CRGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 126 CRGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]
BLAST of CcUC03G051660 vs. TAIR 10
Match: AT1G22780.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 49.7 bits (117), Expect = 5.2e-06
Identity = 39/120 (32.50%), Postives = 59/120 (49.17%), Query Frame = 0 

Query: 41  LKFALQYIHGIGQSRANQILAELHME-NKLAKDLTKRELVDLADEIS------------- 100
           + FAL  I GIG+  AN +  +  ++ NK A +L+  E+ +L   ++             
Sbjct: 26  IMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLN 85

Query: 101 --------KY--MVGHELDKCVKKDIAVLQSIRCHRGIRHEQGLPCRGQRTKTNARTMKS 137
                   KY  +V + LD  ++ D+  L+ IR HRG+RH  GL  RGQ TKT  R  K+
Sbjct: 86  RQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKT 145

[Close]
BLAST of CcUC03G051660 vs. TAIR 10
Match: AT1G34030.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 49.7 bits (117), Expect = 5.2e-06
Identity = 39/120 (32.50%), Postives = 59/120 (49.17%), Query Frame = 0 

Query: 41  LKFALQYIHGIGQSRANQILAELHME-NKLAKDLTKRELVDLADEIS------------- 100
           + FAL  I GIG+  AN +  +  ++ NK A +L+  E+ +L   ++             
Sbjct: 26  IMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLN 85

Query: 101 --------KY--MVGHELDKCVKKDIAVLQSIRCHRGIRHEQGLPCRGQRTKTNARTMKS 137
                   KY  +V + LD  ++ D+  L+ IR HRG+RH  GL  RGQ TKT  R  K+
Sbjct: 86  RQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKT 145

The following BLAST results are available for this feature:
BLAST of CcUC03G051660 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023550656.16.1e-15086.6030S ribosomal protein S13, chloroplastic [Cucurbita pepo subsp. pepo][more]
KAG7016519.11.0e-14986.2930S ribosomal protein S13, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_022939154.18.8e-14985.6730S ribosomal protein S13, chloroplastic-like [Cucurbita moschata][more]
XP_037492560.12.3e-10160.87uncharacterized protein LOC105638882 [Jatropha curcas][more]
XP_011027702.19.5e-9551.87PREDICTED: uncharacterized protein LOC105127921 [Populus euphratica][more]
BLAST of CcUC03G051660 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P427322.5e-6676.3330S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1... [more]
P821632.9e-6273.3730S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 P... [more]
Q9CA192.7e-3147.30Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=37... [more]
Q8LPW22.2e-3048.28Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP... [more]
B1VAC34.7e-2852.9430S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1[more]
BLAST of CcUC03G051660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FGA34.2e-14985.6730S ribosomal protein S13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A498J3821.0e-9451.58ABC transporter domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_03... [more]
B9RJA57.9e-8754.9530S ribosomal protein S13, putative OS=Ricinus communis OX=3988 GN=RCOM_1032660 ... [more]
A0A5A7TVL61.3e-8495.2930S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3CPR48.2e-8496.4130S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408... [more]
BLAST of CcUC03G051660 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G14320.11.8e-6776.33Ribosomal protein S13/S18 family [more]
AT5G14320.24.3e-3770.18Ribosomal protein S13/S18 family [more]
AT1G77750.11.9e-3247.30Ribosomal protein S13/S18 family [more]
AT1G22780.15.2e-0632.50Ribosomal protein S13/S18 family [more]
AT1G34030.15.2e-0632.50Ribosomal protein S13/S18 family [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.50coord: 200..268
e-value: 5.9E-25
score: 89.2
coord: 31..96
e-value: 6.5E-18
score: 66.7
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 151..319
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 18..147
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.1030s ribosomal protein s13, domain 2coord: 269..321
e-value: 2.0E-25
score: 90.1
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.1030s ribosomal protein s13, domain 2coord: 98..149
e-value: 2.9E-20
score: 73.5
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 201..305
e-value: 3.3E-31
score: 108.4
coord: 32..133
e-value: 2.6E-25
score: 89.3
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 31..136
score: 30.225462
IPR001892Ribosomal protein S13HAMAPMF_01315Ribosomal_S13_S18coord: 199..315
score: 24.256664
IPR001892Ribosomal protein S13HAMAPMF_01315Ribosomal_S13_S18coord: 26..143
score: 20.995743
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 202..308
score: 34.88559
IPR019980Ribosomal protein S13, bacterial-typeTIGRFAMTIGR03631TIGR03631coord: 201..310
e-value: 9.1E-40
score: 133.6
IPR019980Ribosomal protein S13, bacterial-typePANTHERPTHR10871:SF137S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIALcoord: 151..319
coord: 18..147
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 284..297
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 112..125
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 200..311
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 32..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC03G051660.1CcUC03G051660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003676 nucleic acid binding