CcUC03G047170 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC03G047170
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RNA pseudouridine synthase 6, chloroplastic-like
Location	CicolChr03: 5044567 .. 5056407 (+)
RNA-Seq Expression	CcUC03G047170
Synteny	CcUC03G047170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACAAGCATCGTTTTGGTCTCACCAGGCACCAGCTCATCCCGGCTCCTAAGCCTCCCAAGGATGCTAGCTTCCATGAATATCGCTCTGGTGGCCGCCCATGGTTGCCGTGGCCTCAGTATATCACTTACCCTGCTGCGCACATTGGCCAGAACGCATGCTAATCTCAGTTCTGCCATTTGCGGCAATCGCTTTGCTGCTCGGCGTTCTTTTAGTTTGAATAACAGCGCGTTCCCTTGTGAATCCTCAACAACAAACCTTACCGTTACACAAACTGCAACTAATTCTGCAGAAAATGGGTACTGCTAATTCTTTTTCCTCATACCTTCTTGTTTACTAGTTTGTTTGCTAGTTTGAACGGGGATACTATTGCCTAATTGTGCTTTAATCGTATAAATGTGAGATTCTGACTTAATTGAATTGATTGAATGTTTGTTTCAATGTTCGTAGGAGATTTTATCGTTGGTCATTCCCACATTTCTACTTTATGCAACTCGTTGATTTCGATTAGGATTTTGTTTTTCTTTGCGTATTGCTTGTCTTGTGGTAAAAAATTACAGAATAAAAGCAAAATTGAAGGTTAAGAAAAAAAAGGAAAGAGGAAAAAGAAAGTCCATGGATGATGGCTCGAAATATATGCATTATATATGGACTATGAATCATGAGCATTGAACCCATCTCCACTGGTTGGCACTGAAAAACTTGTAGTTGTCGTCAAAACTGGCTTACTTGTTAGCAGCCCTAAACTTCAATTTTTCATTCTACTGTCATATAAAGGAGGAAAAAAAGAACTCTCCTGGCACCTTTGCTGATTACTCTGTTAGATGCTTAATGCACTCTCAATAATCATGATTTGTCATTGGATTTTTTCATTCTCCGAACCTATGGTATTGATTCCCTTTTTATGATTCCTTTAGGATGGAGCATGCTCAGACTGAAATTAATTTCAGGTATCCTCAATATCATCGTTTGCTTCCATGTCCTTCATTCAATGTACCACCACGAGTTGAACATCTGGTCGTTTTGGAAGCAGGGCCTGTTATGGAATACATCTCTAAATCCTTGGATCTTCCTCCTCTGTAAGTTCCATCTTTTTATCCTTGGATCTTCCTCCTCTGTACGTTCCATCTTTTAGGCTGCTCATAATAATTGATTATGCAACATAATATTGAGTCTAATGTAGATGAAAGCAATGATTATAGTTTTTCATTGTTTGAAAAGGTACGTTGCAGATCTCATTCATTTTGGTGCAGTATATTATGCTCTAGTATGCCCACAACCGCCTCCAACTGCAACCCCTGAGGAATTTAGACTATTCAAAAAATTTACAGAACCATCATTTTTGAAAGGGCGAAAATCTATTAAAGGGAAAACTGTGAGAGAAGCACAGAATACTTTCCGGATAACTCACATTGATGAGTTTGTGGAAGTTGGAATGTACTTGCGTGTTTATGTGCATCCCAAACGCTTTCCAAGGTGAAAGAACTACCTGCTTTTCTTTTCAAAAGCAAAGTAATGTTCATGGTGGATTGATGCTAGTTGAAATTTACAATCATCCAGGTGCTATGAAATTGATTGGAAATCAAGAATTATTGCTGCGACAGATTCCTATGTGGTTTTGGACAAACCTGCTGGTACATCGGTCTGTGGCTGAATGCTTGAAACATTAATCTCTGGCTTGAGGAATTATTTGCATTGCCTTCCATTTGTGGTGACTGTTGGTAGTTGCATTGTTTCTTCCTGTAACATTCTGCAAAATTCGATCAAGAATGGTGTATGCATTTTGGTCATATGGATAAATTTACAGATGTTTCAAGAACATGGCACCTCTGAGGCCTTAAGTTAAAAAAACTGATGATGTAAACCATAACACTTGTAGAGAATGACACAATTTATTTGCACTAATACCATATAGCGGACATTCATTTTGTTGCTGTTAACTTTGATCGATATTCTGTCAGGTTGGAGGCACTACTAACAACATCGAAGAAACTTGTGTAACCTTTGCAACTCGTGCTTTAGGATTAACATCTCCCTTGTGGACTACCCATCAAATTGACAACTGTACTGAGGGCTGGTAATGATGTTTCTTATAGATATTACTAAATTCCAATATAATGCCTCTCTTCAAAATACTTGTTTTCATTCTTTTTCACTTTTTTGCAGCGTCATTCTAGCTAGGACAAAAGAATATTGCTCCATCTTCCATCGTAAAATCAGAGTAAGTTTCATGGTCTTATTTCTTGAGTTTGACCATTGCGGTTGAGTCACTAAGCAACACCATTCAAAAGATTGTAACATTAGTTTTTTATTTTTTATTTTTATTATTATTTTTTTACCATCTTTAAATCTCTGTTCATTCACTCATTTTCCAGTCTATCATGTACATTGTAATTTCAATATGAAGTAGTTAAATATTCCCACTTAAATCTTCTTTATGCATACAATAGTGGTAAATATTAAAATGCTCCTATTGTTCTCTCTAAATATGAAGTCTTATCTCTATGATAAAGAGGTCTATCAAGGGACCGAGAGTGAAAAGTCGCAAACATTGCATTTGAGAGTCTGAGACTGTCATTTTTAAGCACTTTGCACCAAGGGGACGTGGAAGAGGAAGTTAAAATGGATTTCTTTAGTGATATGTTCATGATAAACAAGCTGCACAAGCTGACAAGTTATTTTATTTTTAATGGTCTTCGTGGAATATCCATTATACATATTTGAAATTTTAGTAAAGTTGTTTGTGTCGATGCTCTTCATTTCTTAATTTGATAGTAATGCTATACAATTTTTTCTTTATAGGAGAAAAAGGTTATGAAGCTTTATCTTGCCCTTGCTGCTGCTCCCCTGCCAATGGGAATAATAACACACTATATGCGGCCAAATAACTTGGCTCCTAGACTCGTATCAAAAGGCAGGTTTCACAATCAAGCATCCAAATAATTTTCGAATATTGCTTTGAACTATTTGTTATAATTTTTTATATTGGGGAACATATGTATATTGTCTGATTATTGTTTTGCAGCCACAAACTCAAGCACTTAGAAAATCAGTCTTAACTATTCTTCCAGCAAATTAACATAATGGTCGTCCTAGTCATTGATATTTTAACTCCTTCCCAGACACCTACGAGGGTGTCATCCTCAACCTTCAACCCTGACCACAAATGTATCCGTATTAAGGTGTGATAGGCGGTTTATGTGTTTTGGTCACTTTAAACACCTTCTACTTGCAGATTGTATTGATGGATGGAACTTGTGTCAGCTTGAGGTGTTGGAATGTAGAGAGGTTTCATGGCCGGATGCTGATATTGAAGCAAAATACTGTATTGAAGATTGCGGGTGGCCCTCCAAAAAGAAAGCATTTGAATGTAAAATCAGCCTCTTGACTGGTCGAACACACCAGGTTCTTAGTGCAGTCTTTCTGTTTCTATGGTTACCTTTGTTATTTCGAAACCATCTTCATAAATTCTTGCACTCATTGTTCTTAAAATAAATACGATATTTCCTGATGATGCAGATTCGAGCACAACTGGCTGATTGTGGAGCACCATTGGTTGGTGATTCCATCTACATGCCTGCAGCAGTTGCAGAGATGGCTAACCCTGGGTTGAATCCATTTGGAAAATGTAAGAAAGAGTATACAAGCGAAGAAGATAAAGAAACTGCAATGGCAGAGTGGATTGCTCGGCACGGAAAGGAACCGGCCGTTGCTATTGGACTGCAGGCTTATGAGATTTCATGGGATTTGGGGGAGCACATTTACAATGCTGGGACTCCTTGGTGGAAGCATGAACAGTTATAGCTCAATATTGACTCCAAGCCATCATTTTGCAATACTTAGAAAGTCAATCAAAACACGCCTTAAGTATTTTATATAGCGCTCTAAAATCAAGTTTTTTTATATTTACAAATATATCTTAACCATCTATGACCTGCTTAATGGAGAAAGTTAAGGAACGAAACTAACAGCATTCAATTATCATATCAGCAGTGTACAGGCAATTACATTAGTAATTCTCATAATTGCTTGCTTAGATCACTTTCCTTGACGCAACTGCAATATTACCCATCAAAGTTCGGAAGATGAAAATCTTATACCAGGAGGTTTGAAAGCTTTGGAGTTCTCTTCAGAGTGGCATAATGTACATGGTAAAGCTCAACCTTTCAGTATATAATATATATATATCCATTCAGCCATTCAAAGTTGTCCAGCAAAGATCAGGAAATGCAACTTCTCACATCTGCTCCTTCCTTGAACAAACACCACATTATATACAATCCGGACAAGCTTCAATTCGATCAAGGCTGCACAAAGTGAAACTTCTGTTTTCTGTTGGACCATTGGATGGATATAATTAAATTCAAACTTTTTCATTCTGTCTGTGTTTATGGGTACTCTGTGGATGTAATCAAGTTTTTTGTTCTATGTATGAATTCAATAGTATATAGTCTATGAGTGTTGTTCCTTGAAGTATTAGAGCTTTTCTCCTGTCTTTTCCCAATCATGGAGTGAAATGCAATTTGGTTCTTTTAGGGGGGCTAAACCCCTTTTTGTCTAAAAAAATTTCAATCAAGTTGACACAATATGGTTGGCTTGTAATAATTATTAGATGTAGATTACAAATCTCCTTAAAAAATACTTGATATAAATTTGAAATACTTCTCTCATTTTCATCCAGCAATTATCAGCCACTTTATAGTTGTCTCACCGAATTTTTTTTCTTTTTACATCTCTTTTAGAAATTATGGGTCAAATGACCAAGTTTCTTGACTAATTTAGCCCTCCTCAAAATAGTTAATTAAGTGAAACCATTATCTAAAAATTGCCATCCCTCCAAATAAAATTATTATTAAGTTCATGTCTATTGAACATCTCTACTAATAAGGCTCTTGATTTTCAATTTTGGGTGGCTATGATGGTTAACTTTGTTGCCCATCAAATTTTGGAAAGTGACCAACTCATTTCATTTAAAAACATATTGTACAAAGAAGCTAGTATTTATTAACCTTTCATTTTGAACAAATGTTCACATGGTGTATTTTCTTAAATTAAATCTATTATTTTAGCAAATAGATATAAATGAAATAGTCGTAGAGGAGACCAAGATGATAAACAATTTTTTTAAAGAAACAAATTTTCATTTATTATTAAAAAATAGGTTGAAATACTATTTTGGTTCCTATACTTAAATATTGATTAGAGATATTTTGGTATTTTCACATGTCTAATTGTAATCGTTATAATATAGACTTTAAAAATATGTTCTCAATATTTATAGTAGAAAAAGATAATAAAACAATTTTATAAAAATAAACGATAAAGTGGTAGGGACTCAATTTTTTTTTATTTTTTTTGGAAGTACATGACTTAATCTTATTATTAATTTGAAAATTTGTGGGTAGAGGAGACCAAAATATTATTTAACGAAAAGAAAAAAAAATGAATTTTTTGGTCCCTAGGTTTTGGGTCTAATTTTCATTTGGTCTCTAGGTTTTAAAATGTTACACTTTCGTCCCAGCATTGTGAGTTTGATTTTAATTTAGTCTTAAGTTTCAAAATGTTATCATTTTACTTATGAGGTTTGAGTTTTGTGTCAAATTGATCAATAGATTTCAAAATTTCTACTTTTAACTTCAAATTTTCAGTAAAAGAATTATAATTAAGTAGGTTTTACTATTTTTTAATCACTATTAAACCAAACATTCACTTTATTATTATTTTAAATTAATTAATAGATGATGACGCTTAAGACTATAATGAGTACTTAGTGAAAACTCGAGCTTGACAATGGGAATCTTGAAACTTACGTACCAAATTATAATAAAGCTCAAACCTCATAGATAAAATTATAACATTTTGAAATTTAAAGACTAAATTAAAATCAATCCAAAAAACTTTAGGGCTAGAAATGTAAAAATTTGGGGTGCCTTTTAGATAGCTACTGGGAGGGATAAAAGTGAGTAAAAGTAAATCTTCATCGTTTTTTTGTGTTGAAGTAAAACAAATTGGAATAAAAATCTAGTAAAATCATTTTCAAAAGTACATACGGTTTTAAGTTAAATTTTAATTTTATCCTCTAAAATTAAGATTTATTTATTGGGAAAATCACCTTTATAGACCTCAAGTTTTGAATAATATGTGCGTTTGATCTCTAAGTTTTAAAAATGTATCTTTTTAATCCTCAAGTTTATAAGAATAGGTTCATTTGGTCCCTGAGTTTTCAAAATATATTTTTTTTCATCCTTGAGTTTTTAAAAATAATTTTAAAAGGTCCTTCAAGTATTTTTTATTTGATTTTTTAAAAATAATTATATGATATTTAAAATTAGAAAAAAATAGTTTTAGAGAAGAGATGGTTATTAAAAATTATTCTTCTAATTGAAAATATCATATAATTATTTTAAATAATAATAATAAATATTTGAGGATCACTTAAACCTATTTTTAAAAACTTAGCGACTAAAAAGTTACATTTTGAAAACATATGACCAAATGGATCTATGCTTTAAACTTGGGGATAGAAAAAGTACATTTCTAAAACTCAGGGATCAAACACACATAGTGTCCAAAACTTGGGGACTAAAAAGGTAATTTACCCTTATTTCTTTCCCACCTAATCAAATCTATATATTTATTTAAAATTATATATTATAAAAAAATAAAAATTTTAGAATAGGTCTATTTTAGTTATTATAACTAGATACTTAAGTATTTATTTACCAAACATTAATACTTTTTTGTCGCATGGTCGGAGAACGCTCAAGAGCGATGAGATTGGTTGGCTTGTTCGTAATTCGATTGACCGCCCTATTAGGGGTGGGTGCATCCCAATATCTACTAGTTGGTCGATCAAAGGTTTAGAAGCTAAAGCCATTGTAGATAGTCTAAACCACATTATAACTTCTTGGGATGGACAAACTCCCTAGTGGAGGTAGAATCAGATTCAATTGAAGTTATCAAACTTTTGATTCGTGGGATGTCTGCTTATCCAAGGTTAATTTTTTTCAATTGAGGAGGCTCTCATTATCGCTCGTAAATGCTACCCTGTAAATGTTATTCATCTTTGTAAAATTCCTAAAGAGAAACCAAAGCTGCCCATAATCTAGCAGTTTTGGCTTCATCTAAAACTTCCTTCTTTTGGGAGGAATTGATGGTTGGTTATTCCTCTATTTTATTTGTCATATTGAATTTCAATTTCAAAATAAAAATAAAAAAAAGAAAAATTCAAAGTTTAAAATTTACCGGACACTAATTTATTTTATTTCACACCACTAAAATCGGAAGACAAAAGGAAAACTAGACTCGGATCAAAATTTACTCTCTCCAAAAGTATAATATTATCATTTATCGTTAAATTTGCGACGTGCCCGACATTTAGGATCGCAAGCAAGCATCATTTTGGTCTCACCAGCCCATCCAGGCTCCAAAGACTCCAAAGGATGCTAGCTTCCATGAATATAGTTCTGGTGGCCTCCCATGGTTGCCGTGGCCTCAATACATCACTATCCCTGCTGCGCACATTGGCAAGAACTCGTGCTAGTCTCAGTGATGCCACTTGCGGCAATTACTTTGCTCCTCGGCGTTCTTTGAGTTCGAAGAGCAGAGCGTTCCCTTGTGAATCCTCAATAACAGACGTTACAGTCACAAAAACTACAACGAATTCTGCAGAAAATGGGTACTGCTAATTTTTGTTTCTTATACCTTCTTGTTTATTAGTTTGATTGCTAGTTTTCTTTTTATATGAAGTTTGATTGCTAGTTTGAACGGTTACACTGTTGTTCAGGTGTGTTCTAATCGTATAAATATGACTTAACGACTTACATGTTTAAATTGTTTGAATGTTTATTCCATGGTTGTGGGAAATTTCATCGTTGGTCATTCTAACATTTCTGGTTTATGTAACTCGTTGAAATGGGTTAGGATATTGTTTTTCCTTGCGTATTGCTTGTCTCGTGGTAAAAGTTGCAGAATAAAAGCAAAGTGGAAGGCTAATAACAAAAAGGAAGGAGAAAAAAGAAAATCCGTGTCTGATGGCTCGAACTATATTCACTATATTTGGACTACAGAATTACAAGCACTGAAAATTGAGATTTTGGGATGCCTTTGAGAGGCGCAAATGAAATCTTGCCCAACTTTTAGAAACCTAAGTTTTTCGATCTTTAGATTATGCGATCGTTGGGTGAAATCACCAAAACAACCAACCAACACACGTGTAGGCCTCTGGATTCAATTTGCCTTCTGCTGTCAGATAGGAGTATCTGGAACCGTCAAATCACCAATTAAACTAAGTCTAAATTGGTGGATTATGATGAATAATAAATATTAATGGAGAAAGAGATGACATTAATAGTTTGAACACATGATCAACCGACCTCCTATATTGATAGTATGTTAAATTACCAATCATTTAAAAAGTTTAGGTTGATGGGTTATGAGAAATTTAATTATTTCAATACTTTAACCCACTTTGCTGATTACACTGCCAGATACTTAATACACTTGCAGTAATCATGATTTGTTATTGGATTTTTTTCATTCTCCCAACCCCTGGTATTGAATTCCCATTTTATGGTTCTTTTGGGATTTAGCATGCTCAGGCTGAAATTAATTTCAGGTATCCTCAATATCATCGTTTGCTTCCATGCCCCTCATTCAATGAACCACCACGAGTTGAACATATGGTCGTTTTGGAAGGGGGACCTGTTATGGAATACATCTCTAAATCATTGGACCTTCCTCCTCTGTAAGTTCTACTTCTATCTCTTAGTTGTTCATAATAATTTAGTCTGCAACATAGGGTTAAGTGTATTTTAGATGAAGCAATGATTTCATAATTTCATTGTTTGAAGGTATGTTGCAGACCTTATTCATTTTGGTGCAGTATATTATGCCCTAGTATGCCCACAGCCTCCGCAGACTGCGACCCCCGAGCAAATTAGACTATTCAAAAAATTTACAGAACCGTCATTTTTGAAAGGGCGGAAATCTATCAAAGGAAAAACTGTGAGAGAAGCACAGAAGACTTTCCGGATAACTCATGTTGATGAGTTTGTGGAAGTTGGAACGTACTTGCGTGTTCACGTGCATCCCAAACGCTTTCCAAGGTTAAATCAACTACCTGTTTTTCTTTTTTAAAACAAAATGTTCATAATGGAATGATCCTCGTTGAAATTTACAATCAATCAGGTGCTATGAAATTGATTGGAAATCAAGAATTATTGCTGTGACAGAATCCTATGTGGTTTTGGACAAACCTGCTGGTACATCGGTCTGTGGTTGAACACTTGAACCATTAATCTCTGGCTTGAGGAATTTTTTCATTGCCTTCTATTTGTGGTGACTGTTGGTTGTTACATTTTTCCTTCCTGTAACATTCTGAAAATTTGATCAAGACTGATGTAGGCACTAGGCATTTTGGTGATATGGATAAATTTACCGATCTTTCAATAACATGCCACCTCTGAGCCTCTAAGTACTAAAATTTGATGATGTAAACAATAAACCCTAATAGAGAATGACACAATTTATTTGCATCTTTTTTTTAATAAAACAATTTATTTACATCAATAGCATCTATCTGAACATTCATTTCTCAGCCATTAAGTACGACAAATATTTTGTCAGGTTGGAGGCACTACTGACAACATTGAAGAAAGTTGTGCAACCTTTGCAACTCGTGCTTTAGGATTAACATCTCCGTTGTGGACTACACATCAGATTGACAACTGCACTGAAGGGTGGTAATGATGTTTCTTATAGATCTTTCTATGTCTAATTCCTTTCTTCAAAAAATACTTGTTTTCATTCATTGACACTTTTTGCAGCGTCATTCTAGCTAGGACGAAAGAATATTGCTCCATCTTCCATCGTAAAATCAGAGTAAGTTTCATGGTCTTACACTTTAACTTACTTTGCTAACTGGTAAATTCACTCCAAGACAATGCTTTAAAAGCGACAACTTATTCCCATATTGTCACATAAGTTTCTTTTTTAACCATCTTTAAATCCCTGTTCATTCACCATGTGTTATAATTTGGATATGAAGTAGTTAAATATTCCTGCCCAAGTCTTCATCATGCTTGCCATACTGGTAAAATATGAAAATGCTCCCTTTACTCTCGCTAAATATGAAGTCTCTCTCTATGATAAAGAGGTCTCTAAACTTTGCATTTGAGATTGTCATTTTTAAGCACTTTGCAACAAGGGGAATTGAAAGATGGAGGAAATAACAATGGATTTTATTTAGCGATAATTCATGATAAACAAGCTGCACGAGCCAACAAGTTATTTTATTTTTAGTGGTGTTGGTAGAATATCCATTATACATATTTGAAGTTTACTAGTTAAGTTATTTGTCTTGATGTTTTTCATTTCTTAATTTGATAGTAATGCTTTACAATTTTTCATGATAGGAGAAAAAGGTTATGAAGCTTTATCTTGCGCTTGCTGCTGCTCCCGTGCCAATGGGAATAATAACACACTACATGAGGCCGATTAATATGGCTCCCAGACTTGTATCAAAAGGCAAGTCTCCCGCTCAAGCATTCAAATAATAATTGGATATTGCTTTGAACTATTTGTTGCAAGTTATATGTTGGGGAACATATGCATACCGTTTGATTATTATTTTGCAGCCATAAAATCAAGCACTTAGAAAATCGGTCTTATCTTTTCTGCCAACATATTAATATGCAAATGGTCGTCCCAGTCATATTAACATTTTAACTCCCACCCAACCCCGGCACCTAGAACAGTGTCACCCTCAACCTCCAACCCTGGCCAGGAATGTATACATAGTATGGTGTGACTGACAGAACTCCTTTTGGTCGCTTTAAACTTCTTCTGCTGGCAGATTTTATTGATGGATGGAATGTGTGTCAGCTTGAGGTGTTGGAATGTAGAGAGGTTGCATGGCCGGATGCTGATATTGAAGCAAAATACTGTATTGAAGATTGTGGATGGCCCTCCAAAAAGAAAGCATATGAATGTAAAATCAACCTCTTGACTGGTCGGACACATCAGGTTCTTAGCATAGTCATTCTGTTTCCATAGTTACCTTTATTATTTTAAAACCATCTTCATGAATAGAGAGTTAATGAATATGTTGCTTCCTGATGATGCAGATTCGAGCACAGCTGGCTGATTGTGGAGCACCATTGGTTGGTGATTCCATGTATATGCCTGCTGCGGTTGCAGAGATGGCTAGTCCTGGCTTGAATCCATTTGGAAAATGGAAGAAAGAGTATACAACTGAAGAAGATAAAGAATTTGCAGTAACAGAGTGGATTGCTCTGCATGGAAAAGAACCAGCCGTCGCTATTGGACTGCAGGCGTATGAGATTTCATGGGATTCAGGGGAACACATTTACAATGCTAGGACTCCTTGGTGGAAGCAGGAGCAATTATAGCTCAATATTGATACCAAGCCATCATTTTGCATTAGTCAACATTCTCCAAATCTGTAAGGTTATTTCAACTACCCACCGCACACATGGAAAAGAGTTGAGAAAGATTCTCTTTATTTTGTATTGCTGTAAAATAGTCTTTTGTTTACAAAGATATCATAACCATCTATAATCAGCTTAATAGAAAGTTAACAAACGCAACTAACAACATTCAGTTATTAAATCAGTCGTGCGCAAGCAAGGTTCAGGGGCGCTGCTTGCTTAGATCACTTTCTTGGATGCAATTGCACTGACTTTGTTGCTCATCAAAATTTGGGCAATGAAATTTTTGTACCAGAAGGCTGAAAGCTTTGGGGTTCTCTTCAGAGTGTTATAATCTACATGGTAAAGCCCAAACCTTTCAGTATATCCATTCATCCATTCAAAGTTATCCA

mRNA sequence

TAACAAGCATCGTTTTGGTCTCACCAGGCACCAGCTCATCCCGGCTCCTAAGCCTCCCAAGGATGCTAGCTTCCATGAATATCGCTCTGGTGGCCGCCCATGGTTGCCGTGGCCTCAGTATATCACTTACCCTGCTGCGCACATTGGCCAGAACGCATGCTAATCTCAGTTCTGCCATTTGCGGCAATCGCTTTGCTGCTCGGCGTTCTTTTAGTTTGAATAACAGCGCGTTCCCTTGTGAATCCTCAACAACAAACCTTACCGTTACACAAACTGCAACTAATTCTGCAGAAAATGGGATGGAGCATGCTCAGACTGAAATTAATTTCAGGTATCCTCAATATCATCGTTTGCTTCCATGTCCTTCATTCAATGTACCACCACGAGTTGAACATCTGGTCGTTTTGGAAGCAGGGCCTGTTATGGAATACATCTCTAAATCCTTGGATCTTCCTCCTCTGTACGTTGCAGATCTCATTCATTTTGGTGCAGTATATTATGCTCTAGTATGCCCACAACCGCCTCCAACTGCAACCCCTGAGGAATTTAGACTATTCAAAAAATTTACAGAACCATCATTTTTGAAAGGGCGAAAATCTATTAAAGGGAAAACTGTGAGAGAAGCACAGAATACTTTCCGGATAACTCACATTGATGAGTTTGTGGAAGTTGGAATGTACTTGCGTGTTTATGTGCATCCCAAACGCTTTCCAAGGTGCTATGAAATTGATTGGAAATCAAGAATTATTGCTGCGACAGATTCCTATGTGGTTTTGGACAAACCTGCTGGTACATCGGTTGGAGGCACTACTAACAACATCGAAGAAACTTGTGTAACCTTTGCAACTCGTGCTTTAGGATTAACATCTCCCTTGTGGACTACCCATCAAATTGACAACTGTACTGAGGGCTGCGTCATTCTAGCTAGGACAAAAGAATATTGCTCCATCTTCCATCGTAAAATCAGAGAGAAAAAGGTTATGAAGCTTTATCTTGCCCTTGCTGCTGCTCCCCTGCCAATGGGAATAATAACACACTATATGCGGCCAAATAACTTGGCTCCTAGACTCGTATCAAAAGGCAGGCGGTTTATGTGTTTTGGTCACTTTAAACACCTTCTACTTGCAGATTGTATTGATGGATGGAACTTGTGTCAGCTTGAGGTGTTGGAATGTAGAGAGGTTTCATGGCCGGATGCTGATATTGAAGCAAAATACTGTATTGAAGATTGCGGGTGGCCCTCCAAAAAGAAAGCATTTGAATGTAAAATCAGCCTCTTGACTGGTCGAACACACCAGATTCGAGCACAACTGGCTGATTGTGGAGCACCATTGGTTGGTGATTCCATCTACATGCCTGCAGCAGTTGCAGAGATGGCTAACCCTGGGTTGAATCCATTTGGAAAATGTAAGAAAGAGTATACAAGCGAAGAAGATAAAGAAACTGCAATGGCAGAGTGGATTGCTCGGCACGGAAAGGAACCGGCCGTTGCTATTGGACTGCAGGCTTATGAGATTTCATGGGATTTGGGGGAGCACATTTACAATGCTGGGACTCCTTGGTGGAAGCATGAACAGCTCCAAAGACTCCAAAGGATGCTAGCTTCCATGAATATAGTTCTGGTGGCCTCCCATGGTTGCCGTGGCCTCAATACATCACTATCCCTGCTGCGCACATTGGCAAGAACTCGTGCTAGTCTCAGTGATGCCACTTGCGGCAATTACTTTGCTCCTCGGCGTTCTTTGAGTTCGAAGAGCAGAGCGTTCCCTTGTGAATCCTCAATAACAGACGTTACAGTCACAAAAACTACAACGAATTCTGCAGAAAATGGGTATCCTCAATATCATCGTTTGCTTCCATGCCCCTCATTCAATGAACCACCACGAGTTGAACATATGGTCGTTTTGGAAGGGGGACCTGTTATGGAATACATCTCTAAATCATTGGACCTTCCTCCTCTGTATGTTGCAGACCTTATTCATTTTGGTGCAGTATATTATGCCCTAGTATGCCCACAGCCTCCGCAGACTGCGACCCCCGAGCAAATTAGACTATTCAAAAAATTTACAGAACCGTCATTTTTGAAAGGGCGGAAATCTATCAAAGGAAAAACTGTGAGAGAAGCACAGAAGACTTTCCGGATAACTCATGTTGATGAGTTTGTGGAAGTTGGAACGTACTTGCGTGTTCACGTGCATCCCAAACGCTTTCCAAGGTGCTATGAAATTGATTGGAAATCAAGAATTATTGCTGTGACAGAATCCTATGTGGTTTTGGACAAACCTGCTGGTACATCGGTTGGAGGCACTACTGACAACATTGAAGAAAGTTGTGCAACCTTTGCAACTCGTGCTTTAGGATTAACATCTCCGTTGTGGACTACACATCAGATTGACAACTGCACTGAAGGCGTCATTCTAGCTAGGACGAAAGAATATTGCTCCATCTTCCATCGTAAAATCAGAGAGAAAAAGGTTATGAAGCTTTATCTTGCGCTTGCTGCTGCTCCCGTGCCAATGGGAATAATAACACACTACATGAGGCCGATTAATATGGCTCCCAGACTTGTATCAAAAGGCAAAACTCCTTTTGGTCGCTTTAAACTTCTTCTGCTGGCAGATTTTATTGATGGATGGAATGTGTGTCAGCTTGAGGTGTTGGAATGTAGAGAGGTTGCATGGCCGGATGCTGATATTGAAGCAAAATACTGTATTGAAGATTGTGGATGGCCCTCCAAAAAGAAAGCATATGAATGTAAAATCAACCTCTTGACTGGTCGGACACATCAGATTCGAGCACAGCTGGCTGATTGTGGAGCACCATTGGTTGGTGATTCCATGTATATGCCTGCTGCGGTTGCAGAGATGGCTAGTCCTGGCTTGAATCCATTTGGAAAATGGAAGAAAGAGTATACAACTGAAGAAGATAAAGAATTTGCAGTAACAGAGTGGATTGCTCTGCATGGAAAAGAACCAGCCGTCGCTATTGGACTGCAGGCGTATGAGATTTCATGGGATTCAGGGGAACACATTTACAATGCTAGGACTCCTTGGTGGAAGCAGGAGCAATTATAGCTCAATATTGATACCAAGCCATCATTTTGCATTAGTCAACATTCTCCAAATCTGTAAGCAACATTCAGTTATTAAATCAGTCGTGCGCAAGCAAGGTTCAGGGGCGCTGCTTGCTTAGATCACTTTCTTGGATGCAATTGCACTGACTTTGTTGCTCATCAAAATTTGGGCAATGAAATTTTTGTACCAGAAGGCTGAAAGCTTTGGGGTTCTCTTCAGAGTGTTATAATCTACATGGTAAAGCCCAAACCTTTCAGTATATCCATTCATCCATTCAAAGTTATCCA

Coding sequence (CDS)

ATGCTAGCTTCCATGAATATCGCTCTGGTGGCCGCCCATGGTTGCCGTGGCCTCAGTATATCACTTACCCTGCTGCGCACATTGGCCAGAACGCATGCTAATCTCAGTTCTGCCATTTGCGGCAATCGCTTTGCTGCTCGGCGTTCTTTTAGTTTGAATAACAGCGCGTTCCCTTGTGAATCCTCAACAACAAACCTTACCGTTACACAAACTGCAACTAATTCTGCAGAAAATGGGATGGAGCATGCTCAGACTGAAATTAATTTCAGGTATCCTCAATATCATCGTTTGCTTCCATGTCCTTCATTCAATGTACCACCACGAGTTGAACATCTGGTCGTTTTGGAAGCAGGGCCTGTTATGGAATACATCTCTAAATCCTTGGATCTTCCTCCTCTGTACGTTGCAGATCTCATTCATTTTGGTGCAGTATATTATGCTCTAGTATGCCCACAACCGCCTCCAACTGCAACCCCTGAGGAATTTAGACTATTCAAAAAATTTACAGAACCATCATTTTTGAAAGGGCGAAAATCTATTAAAGGGAAAACTGTGAGAGAAGCACAGAATACTTTCCGGATAACTCACATTGATGAGTTTGTGGAAGTTGGAATGTACTTGCGTGTTTATGTGCATCCCAAACGCTTTCCAAGGTGCTATGAAATTGATTGGAAATCAAGAATTATTGCTGCGACAGATTCCTATGTGGTTTTGGACAAACCTGCTGGTACATCGGTTGGAGGCACTACTAACAACATCGAAGAAACTTGTGTAACCTTTGCAACTCGTGCTTTAGGATTAACATCTCCCTTGTGGACTACCCATCAAATTGACAACTGTACTGAGGGCTGCGTCATTCTAGCTAGGACAAAAGAATATTGCTCCATCTTCCATCGTAAAATCAGAGAGAAAAAGGTTATGAAGCTTTATCTTGCCCTTGCTGCTGCTCCCCTGCCAATGGGAATAATAACACACTATATGCGGCCAAATAACTTGGCTCCTAGACTCGTATCAAAAGGCAGGCGGTTTATGTGTTTTGGTCACTTTAAACACCTTCTACTTGCAGATTGTATTGATGGATGGAACTTGTGTCAGCTTGAGGTGTTGGAATGTAGAGAGGTTTCATGGCCGGATGCTGATATTGAAGCAAAATACTGTATTGAAGATTGCGGGTGGCCCTCCAAAAAGAAAGCATTTGAATGTAAAATCAGCCTCTTGACTGGTCGAACACACCAGATTCGAGCACAACTGGCTGATTGTGGAGCACCATTGGTTGGTGATTCCATCTACATGCCTGCAGCAGTTGCAGAGATGGCTAACCCTGGGTTGAATCCATTTGGAAAATGTAAGAAAGAGTATACAAGCGAAGAAGATAAAGAAACTGCAATGGCAGAGTGGATTGCTCGGCACGGAAAGGAACCGGCCGTTGCTATTGGACTGCAGGCTTATGAGATTTCATGGGATTTGGGGGAGCACATTTACAATGCTGGGACTCCTTGGTGGAAGCATGAACAGCTCCAAAGACTCCAAAGGATGCTAGCTTCCATGAATATAGTTCTGGTGGCCTCCCATGGTTGCCGTGGCCTCAATACATCACTATCCCTGCTGCGCACATTGGCAAGAACTCGTGCTAGTCTCAGTGATGCCACTTGCGGCAATTACTTTGCTCCTCGGCGTTCTTTGAGTTCGAAGAGCAGAGCGTTCCCTTGTGAATCCTCAATAACAGACGTTACAGTCACAAAAACTACAACGAATTCTGCAGAAAATGGGTATCCTCAATATCATCGTTTGCTTCCATGCCCCTCATTCAATGAACCACCACGAGTTGAACATATGGTCGTTTTGGAAGGGGGACCTGTTATGGAATACATCTCTAAATCATTGGACCTTCCTCCTCTGTATGTTGCAGACCTTATTCATTTTGGTGCAGTATATTATGCCCTAGTATGCCCACAGCCTCCGCAGACTGCGACCCCCGAGCAAATTAGACTATTCAAAAAATTTACAGAACCGTCATTTTTGAAAGGGCGGAAATCTATCAAAGGAAAAACTGTGAGAGAAGCACAGAAGACTTTCCGGATAACTCATGTTGATGAGTTTGTGGAAGTTGGAACGTACTTGCGTGTTCACGTGCATCCCAAACGCTTTCCAAGGTGCTATGAAATTGATTGGAAATCAAGAATTATTGCTGTGACAGAATCCTATGTGGTTTTGGACAAACCTGCTGGTACATCGGTTGGAGGCACTACTGACAACATTGAAGAAAGTTGTGCAACCTTTGCAACTCGTGCTTTAGGATTAACATCTCCGTTGTGGACTACACATCAGATTGACAACTGCACTGAAGGCGTCATTCTAGCTAGGACGAAAGAATATTGCTCCATCTTCCATCGTAAAATCAGAGAGAAAAAGGTTATGAAGCTTTATCTTGCGCTTGCTGCTGCTCCCGTGCCAATGGGAATAATAACACACTACATGAGGCCGATTAATATGGCTCCCAGACTTGTATCAAAAGGCAAAACTCCTTTTGGTCGCTTTAAACTTCTTCTGCTGGCAGATTTTATTGATGGATGGAATGTGTGTCAGCTTGAGGTGTTGGAATGTAGAGAGGTTGCATGGCCGGATGCTGATATTGAAGCAAAATACTGTATTGAAGATTGTGGATGGCCCTCCAAAAAGAAAGCATATGAATGTAAAATCAACCTCTTGACTGGTCGGACACATCAGATTCGAGCACAGCTGGCTGATTGTGGAGCACCATTGGTTGGTGATTCCATGTATATGCCTGCTGCGGTTGCAGAGATGGCTAGTCCTGGCTTGAATCCATTTGGAAAATGGAAGAAAGAGTATACAACTGAAGAAGATAAAGAATTTGCAGTAACAGAGTGGATTGCTCTGCATGGAAAAGAACCAGCCGTCGCTATTGGACTGCAGGCGTATGAGATTTCATGGGATTCAGGGGAACACATTTACAATGCTAGGACTCCTTGGTGGAAGCAGGAGCAATTATAG

Protein sequence

MLASMNIALVAAHGCRGLSISLTLLRTLARTHANLSSAICGNRFAARRSFSLNNSAFPCESSTTNLTVTQTATNSAENGMEHAQTEINFRYPQYHRLLPCPSFNVPPRVEHLVVLEAGPVMEYISKSLDLPPLYVADLIHFGAVYYALVCPQPPPTATPEEFRLFKKFTEPSFLKGRKSIKGKTVREAQNTFRITHIDEFVEVGMYLRVYVHPKRFPRCYEIDWKSRIIAATDSYVVLDKPAGTSVGGTTNNIEETCVTFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVMKLYLALAAAPLPMGIITHYMRPNNLAPRLVSKGRRFMCFGHFKHLLLADCIDGWNLCQLEVLECREVSWPDADIEAKYCIEDCGWPSKKKAFECKISLLTGRTHQIRAQLADCGAPLVGDSIYMPAAVAEMANPGLNPFGKCKKEYTSEEDKETAMAEWIARHGKEPAVAIGLQAYEISWDLGEHIYNAGTPWWKHEQLQRLQRMLASMNIVLVASHGCRGLNTSLSLLRTLARTRASLSDATCGNYFAPRRSLSSKSRAFPCESSITDVTVTKTTTNSAENGYPQYHRLLPCPSFNEPPRVEHMVVLEGGPVMEYISKSLDLPPLYVADLIHFGAVYYALVCPQPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEGVILARTKEYCSIFHRKIREKKVMKLYLALAAAPVPMGIITHYMRPINMAPRLVSKGKTPFGRFKLLLLADFIDGWNVCQLEVLECREVAWPDADIEAKYCIEDCGWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMASPGLNPFGKWKKEYTTEEDKEFAVTEWIALHGKEPAVAIGLQAYEISWDSGEHIYNARTPWWKQEQL

Homology

[Close]

BLAST of CcUC03G047170 vs. NCBI nr
Match: KAG6420484.1 (hypothetical protein SASPL_117014 [Salvia splendens])

HSP 1 Score: 1206.8 bits (3121), Expect = 0.0e+00
Identity = 608/982 (61.91%), Postives = 711/982 (72.40%), Query Frame = 0


Query: 19   SISLTLLRTLARTHANLSSAICGNRFAARRSFSLNNSAFPCESSTTNLTVTQTATNSAEN 78
            S S T+    +      SS +         S ++    F C S+    T T+ +  + +N
Sbjct: 26   SFSRTIFSPTSLARTLTSSHLSFKHIHKHHSCNVFKRNFSCRSTAPAETSTKISIPTCDN 85

Query: 79   GMEHAQTEINFRYPQYHRLLPCPSFNVPPRVEHLVVLEAGPVMEYISKSLDLPPLYVADL 138
                        YP Y RLLPCPS N PPRVEH+VVLE GPV+EYISK+LD+PPL+VADL
Sbjct: 86   S-----------YPPYERLLPCPSQNGPPRVEHMVVLEGGPVLEYISKALDIPPLFVADL 145

Query: 139  IHFGAVYYALVCPQPPPTATPEEFRLFKKFTEPSFLKGRKSIKGKTVREAQNTFRITHID 198
            IHFGAV+YALVCP PP TATPE+ + FKKFT+PS L+ R SIKGKT+REAQ TFRIT  D
Sbjct: 146  IHFGAVFYALVCPDPPRTATPEQIKDFKKFTDPSLLRNRSSIKGKTIREAQKTFRITRTD 205

Query: 199  EFVEVGMYLRVYVHPKRFPRCYEIDWKSRIIAATDSYVVLDKPAGTSVGGTTNNIEETCV 258
            EFVE G YLRV+VHPKRFPRCYEIDW+SRIIA T+SYVVLDKPAGTSVGGTT+NIEETC 
Sbjct: 206  EFVESGTYLRVHVHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEETCA 265

Query: 259  TFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVMKLYLALAAAPL 318
            TF TRALGL  PL TTHQIDNCTEGCV+LAR KEYCS+FH KIR+KKV KLYLALAAAP+
Sbjct: 266  TFTTRALGLDDPLKTTHQIDNCTEGCVVLARIKEYCSVFHGKIRDKKVKKLYLALAAAPV 325

Query: 319  PMGIITHYMRPNNLAPRLVSKGRRFMCFGHFKHLLLADCIDGWNLCQLEVLECREVSWPD 378
            P+GI+THYMRP N+APRLVS+                D I  W LCQLEVLEC++V WP+
Sbjct: 326  PVGILTHYMRPVNIAPRLVSE----------------DFISRWPLCQLEVLECKKVPWPN 385

Query: 379  ADIEAKYCIEDCGWPSKKKAFECKISLLTGRTHQIRAQLADCGAPLVGDSIYMPAAVAEM 438
              IE +  I+ CGWP++  A+ECKI+LLTGRTHQIRAQLA  GAPLVGD++YMPA ++E 
Sbjct: 386  DIIEEQNKIDVCGWPTRDFAYECKINLLTGRTHQIRAQLAARGAPLVGDTMYMPAVISEA 445

Query: 439  ANPGLNPFGKCKKEYTSEEDKETAMAEWIARHGKEPAVAIGLQAYEISWDLGEHIYNAGT 498
              PGLNPFG  KKEY++++ K TA+ EWIA HGKEP VAIGLQA  ISWD GEH Y AG+
Sbjct: 446  EYPGLNPFGTNKKEYSNDDAKATAVEEWIAHHGKEPTVAIGLQACHISWDDGEHTYEAGS 505

Query: 499  PWWKHEQLQRLQRMLASMNIVLVASHGCRGLNTSLSLLRTLARTRASLSDATCGNYFAPR 558
            PWW++                             + L   L + R  +            
Sbjct: 506  PWWRYH----------------------------IELTSNLMKARDRI------------ 565

Query: 559  RSLSSKSRAFPCESSITDVTVTKTTTNSAENGYPQYHRLLPCPSFNEPPRVEHMVVLEGG 618
                        E  +  + +           YP Y RLLPCPS N PPRVEH+VVLEG 
Sbjct: 566  ------------EIGLDQIAI-----------YPPYERLLPCPSQNGPPRVEHLVVLEGS 625

Query: 619  PVMEYISKSLDLPPLYVADLIHFGAVYYALVCPQPPQTATPEQIRLFKKFTEPSFLKGRK 678
            PV+EYISK+LD+PPL+V+DLIHFGAV+YALVCP PP+TAT EQI+ FKKFT+PS L+ R 
Sbjct: 626  PVLEYISKALDIPPLFVSDLIHFGAVFYALVCPVPPRTATHEQIKAFKKFTDPSLLRNRS 685

Query: 679  SIKGKTVREAQKTFRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVL 738
            SIKGKT+REAQKTFRIT  DEFVE GTYLRV+VHP+RFPRCYEIDW+SRIIAV ESYVVL
Sbjct: 686  SIKGKTIREAQKTFRITCTDEFVESGTYLRVYVHPRRFPRCYEIDWRSRIIAVNESYVVL 745

Query: 739  DKPAGTSVGGTTDNIEESCATFATRALGLTSPLWTTHQIDNCTEG-VILARTKEYCSIFH 798
            DKPAGTSVGGT++NIEE+CATF TRALGL   L TTHQIDNCTEG ++LARTKEYCS+FH
Sbjct: 746  DKPAGTSVGGTSNNIEETCATFTTRALGLDDTLKTTHQIDNCTEGCIVLARTKEYCSVFH 805

Query: 799  RKIREKKVMKLYLALAAAPVPMGIITHYMRPINMAPRLVSKGKTPFGRFKLLLLADFIDG 858
             KIR+KKV KLYLALAAAPVP+GI+THYMRP+N+APRLVS+              DFI  
Sbjct: 806  GKIRDKKVKKLYLALAAAPVPVGILTHYMRPVNIAPRLVSE--------------DFISD 865

Query: 859  WNVCQLEVLECREVAWPDADIEAKYCIEDCGWPSKKKAYECKINLLTGRTHQIRAQLADC 918
            W +CQLEVLEC++V WP+  IE +  IE CGWP++  AYECKINLLTGRTHQIRAQLA C
Sbjct: 866  WPLCQLEVLECKKVPWPNDIIEEQNKIEVCGWPNRDFAYECKINLLTGRTHQIRAQLAAC 903

Query: 919  GAPLVGDSMYMPAAVAEMASPGLNPFGKWKKEYTTEEDKEFAVTEWIALHGKEPAVAIGL 978
            GAPLVGD+MYMPA ++E    GLNPFG  KKEY++++ K  AV EWIA HGKEP VAI L
Sbjct: 926  GAPLVGDTMYMPAVISEAEYRGLNPFGPNKKEYSSDDAKATAVEEWIAHHGKEPTVAIAL 903

Query: 979  QAYEISWDSGEHIYNARTPWWK 1000
            QA  ISWD GEH Y A +PWW+
Sbjct: 986  QACHISWDDGEHTYEAGSPWWR 903

[Close]

BLAST of CcUC03G047170 vs. NCBI nr
Match: KVI01079.1 (Pseudouridine synthase, catalytic domain-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 948.7 bits (2451), Expect = 3.9e-272
Identity = 504/942 (53.50%), Postives = 621/942 (65.92%), Query Frame = 0


Query: 88  NFRYPQYHRLLPCPSFNVPPR-VEHLVVLEAGPVMEYISKSLDLPPLYVADLIHFGAVYY 147
           + R+ +Y RLLPCP+ NV PR +EHLVV E GPV+++I+K+LDLPPLYVADLIHFGAVYY
Sbjct: 75  SIRHEEYGRLLPCPAENVLPRKIEHLVVKEGGPVLDFITKALDLPPLYVADLIHFGAVYY 134

Query: 148 ALVCPQPPPTATPEEFRLFKKFTEPSFLKGRKSIKGKTVREAQNTFRITHIDEFVEVGMY 207
           ALVCP+PP TATPEE +L+K+FT P  L+ R SI+GKTVREAQNTFRITHIDEFVEVG Y
Sbjct: 135 ALVCPKPPSTATPEEIKLYKEFTNPRVLRKRPSIEGKTVREAQNTFRITHIDEFVEVGTY 194

Query: 208 LRVYVHPKRFPRCYEIDWKSRIIAATDSYVVLDKPAGTSVGGTTNNIEETCVTFATRALG 267
           +RV+                                   VGGTT+NIEETC TFATRAL 
Sbjct: 195 VRVH-----------------------------------VGGTTDNIEETCATFATRALE 254

Query: 268 LTSPLWTTHQIDNCTEG-----------------------------CVILARTKEYCSIF 327
           LT+PL TTHQIDNCTEG                              V+LARTK+YCS+F
Sbjct: 255 LTTPLTTTHQIDNCTEGWYSLKFNSNHWLFVLSCVNEKTANLILFFSVVLARTKDYCSVF 314

Query: 328 HRKIREKKVMKLYLALAAAPLPMGIITHYMRPNNLAPRLVSKGRRFMCFGHFKHLLLADC 387
           HRKIREK+V KLYLALAAA +P G++THYMRP   AP+++S                 D 
Sbjct: 315 HRKIREKQVKKLYLALAAAYVPCGVMTHYMRPFRRAPKIISN----------------DF 374

Query: 388 IDGWNLCQLEVLECREVSWPDADIEAKYCIEDCGWPSKKKAFECKISLLTGRTHQIRAQL 447
           I+ WNLCQLEVLECR+V WP+A ++ +Y IED  WP+K+ A+ECKI+LLTGRTHQIRAQL
Sbjct: 375 IEEWNLCQLEVLECRKVPWPNALLQKEYGIEDFNWPNKEFAYECKINLLTGRTHQIRAQL 434

Query: 448 ADCGAPLVGDSIYMPAAVAEMANPGLNPFGKCKKEYTSEEDKETAMAEWIARHGKEPAVA 507
           A CGAP+VGDS+YMPAA+AE+A+PGLNPFGK KK++ SE D+E  + EW  +HGKEP VA
Sbjct: 435 AACGAPIVGDSMYMPAAIAELASPGLNPFGKYKKQFESEVDRECGIEEWAGKHGKEPGVA 494

Query: 508 IGLQAYEISWDLGEHIYNAGTPWWKHEQLQRLQRMLASMNIVLVASHGCRG-LNTSLSLL 567
           IGLQA +ISWD               E++  +                CR  +   +S+L
Sbjct: 495 IGLQACQISWD---------------EEMAMVP--------------NCRSFILAPVSML 554

Query: 568 RTLARTRASLSDAT--CGNYFAPRRSLSSK--SRAFPCESSITDVTVTKTTTNSAENGYP 627
           RTLA   +    +T  C + +    +   K  SRAF  +S+   + VT T ++     + 
Sbjct: 555 RTLAAATSHRHKSTSFCCSIWNSDFNFHKKNSSRAFSSDSA-ASLAVTSTPSSPNSMRHE 614

Query: 628 QYHRLLPCPSFNEPPRVEHMVVLEGGPVMEYISKSLDLPPLYVADLIHFGAVYYALVCPQ 687
           +Y RLLPCP+ +  PR+EH+VV +GGPV+++I+++L+LPPLYVADLIHFGAV+YALVCPQ
Sbjct: 615 EYGRLLPCPAESFLPRIEHLVVKDGGPVLDFITRALNLPPLYVADLIHFGAVFYALVCPQ 674

Query: 688 PPQTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGTYLRVHVH 747
           PP TATPE+I+L+K+ T+PS L+ R SIKGKT+REAQKTFRI H+DEFVE GTY+RVHV 
Sbjct: 675 PPSTATPEEIKLYKEVTDPSVLRKRSSIKGKTLREAQKTFRIAHIDEFVEAGTYVRVHVR 734

Query: 748 PKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTSPLW 807
           PKRFP                                                       
Sbjct: 735 PKRFP------------------------------------------------------- 794

Query: 808 TTHQIDNCTEGVILARTKEYCSIFHRKIREKKVMKLYLALAAAPVPMGIITHYMRPINMA 867
                      V+LARTK+YCS+FHRKIREK+V KLYLALAAA VP G++THYMRP  MA
Sbjct: 795 ----------SVVLARTKDYCSVFHRKIREKQVKKLYLALAAAYVPCGVMTHYMRPFRMA 854

Query: 868 PRLVSKGKTPFGRFKLLLLADFIDGWNVCQLEVLECREVAWPDADIEAKYCIEDCGWPSK 927
           P++VSK              DFI GWN+CQLEVLECR+V WP+A IE K+ IED  WPSK
Sbjct: 855 PKVVSK--------------DFIKGWNLCQLEVLECRKVPWPNALIEKKFGIEDFNWPSK 856

Query: 928 KKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMASPGLNPFGKWKKEYTT 987
           + AYECKINLLTGRTHQIRAQLA CGAP+VGDSMY PAA+ E+ASP +NPFGK+KK++ +
Sbjct: 915 EFAYECKINLLTGRTHQIRAQLAACGAPIVGDSMYTPAAILELASPEVNPFGKYKKQFKS 856

Query: 988 EEDKEFAVTEWIALHGKEPAVAIGLQAYEISWDSGEHIYNAR 995
           E D+E A+ +W A HGKEP VAIGLQA +ISWD GEH+   R
Sbjct: 975 EADRECAIEDWAAKHGKEPGVAIGLQACQISWDEGEHLKKGR 856

[Close]

BLAST of CcUC03G047170 vs. NCBI nr
Match: XP_038894645.1 (RNA pseudouridine synthase 6, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 915.2 bits (2364), Expect = 4.8e-262
Identity = 451/493 (91.48%), Postives = 460/493 (93.31%), Query Frame = 0


Query: 512  MLASMNIVLVASHGCRGLNTSLSLLRTLARTRASLSDATCGNYFAPRRSLSSKSRAFPCE 571
            MLASMNI LV+SHGCRGL TSLSLLRTLA TRAS + A+CGNYFAPRRSLSSKS AFP E
Sbjct: 1    MLASMNIALVSSHGCRGLTTSLSLLRTLAATRASPNAASCGNYFAPRRSLSSKSSAFPRE 60

Query: 572  SSITDVTVTKTTTNSAENGYPQYHRLLPCPSFNEPPRVEHMVVLEGGPVMEYISKSLDLP 631
            SSITDVTVTKT TNSAENGYPQYHRLLPCP FNEPPRVEHMVVLEGGPVMEYI KSLDLP
Sbjct: 61   SSITDVTVTKTATNSAENGYPQYHRLLPCPLFNEPPRVEHMVVLEGGPVMEYICKSLDLP 120

Query: 632  PLYVADLIHFGAVYYALVCPQPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKT 691
            PLYVADLIHFGAVYYALVCPQPPQTATPEQIRLFKKFTEPSFLKGR+SIKGKTVREAQKT
Sbjct: 121  PLYVADLIHFGAVYYALVCPQPPQTATPEQIRLFKKFTEPSFLKGRRSIKGKTVREAQKT 180

Query: 692  FRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTD 751
            FRITH+DEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTD
Sbjct: 181  FRITHIDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTD 240

Query: 752  NIEESCATFATRALGLTSPLWTTHQIDNCTEG-VILARTKEYCSIFHRKIREKKVMKLYL 811
            NIEESCATFATRALGLTSPLWTTHQIDNCTEG VILARTKEYCSIFHRKIREKKVMKLYL
Sbjct: 241  NIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVMKLYL 300

Query: 812  ALAAAPVPMGIITHYMRPINMAPRLVSKGKTPFGRFKLLLLADFIDGWNVCQLEVLECRE 871
            ALAAAPVPMGIITHYMRPINMAPRLVSK              D IDGWN+CQLEVLECRE
Sbjct: 301  ALAAAPVPMGIITHYMRPINMAPRLVSK--------------DCIDGWNLCQLEVLECRE 360

Query: 872  VAWPDADIEAKYCIEDCGWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPA 931
            V+WPDADIEAKYCIEDCGWP KKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPA
Sbjct: 361  VSWPDADIEAKYCIEDCGWPLKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPA 420

Query: 932  AVAEMASPGLNPFGKWKKEYTTEEDKEFAVTEWIALHGKEPAVAIGLQAYEISWDSGEHI 991
            AVAEMASPGLNPFGK KKEY +EEDK  AV EWIALHGKEPAVAIGLQAYEISWDSG+HI
Sbjct: 421  AVAEMASPGLNPFGKCKKEYMSEEDKGIAVAEWIALHGKEPAVAIGLQAYEISWDSGKHI 479

Query: 992  YNARTPWWKQEQL 1004
            YNA TPWWKQEQL
Sbjct: 481  YNAGTPWWKQEQL 479

[Close]

BLAST of CcUC03G047170 vs. NCBI nr
Match: XP_038894435.1 (RNA pseudouridine synthase 6, chloroplastic-like isoform X1 [Benincasa hispida])

HSP 1 Score: 891.7 bits (2303), Expect = 5.7e-255
Identity = 444/506 (87.75%), Postives = 458/506 (90.51%), Query Frame = 0


Query: 1   MLASMNIALVAAHGCRGLSISLTLLRTLARTHANLSSAICGNRFAARRSFSLNNSAFPCE 60
           MLASMNI+LVAAHGCRGL  SLTLLR LART ANLS+AICGN FAARRSF L ++AFPCE
Sbjct: 1   MLASMNISLVAAHGCRGLCTSLTLLRKLARTRANLSAAICGNCFAARRSFRLKSNAFPCE 60

Query: 61  SSTTNLTVTQTATNSAENGMEHAQTEINFRYPQYHRLLPCPSFNVPPRVEHLVVLEAGPV 120
           SST ++T TQTATNSAENG           YPQYHRLLPCPSFN   RVEHLVVLE GPV
Sbjct: 61  SSTADVTSTQTATNSAENG-----------YPQYHRLLPCPSFNRHTRVEHLVVLERGPV 120

Query: 121 MEYISKSLDLPPLYVADLIHFGAVYYALVCPQPPPTATPEEFRLFKKFTEPSFLKGRKSI 180
           +EYISKSLDLPPLYVADLIHFGAVYYALVCPQP PTATPEEFRLFKKFTEPSFLKGR SI
Sbjct: 121 LEYISKSLDLPPLYVADLIHFGAVYYALVCPQPAPTATPEEFRLFKKFTEPSFLKGRISI 180

Query: 181 KGKTVREAQNTFRITHIDEFVEVGMYLRVYVHPKRFPRCYEIDWKSRIIAATDSYVVLDK 240
           KGKT+REAQNTFRITHIDEFVEVGMYLRVYVHPKRFPRCYEIDWKSRIIA TDSYVVLDK
Sbjct: 181 KGKTLREAQNTFRITHIDEFVEVGMYLRVYVHPKRFPRCYEIDWKSRIIAVTDSYVVLDK 240

Query: 241 PAGTSVGGTTNNIEETCVTFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRK 300
           PAGTSVGGTTNNIEETCVTFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRK
Sbjct: 241 PAGTSVGGTTNNIEETCVTFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRK 300

Query: 301 IREKKVMKLYLALAAAPLPMGIITHYMRPNNLAPRLVSKGRRFMCFGHFKHLLLADCIDG 360
           IREKKVMKLYLALAAAP+PMGIITHYMRP NLAPRLVS+                D IDG
Sbjct: 301 IREKKVMKLYLALAAAPIPMGIITHYMRPVNLAPRLVSE----------------DFIDG 360

Query: 361 WNLCQLEVLECREVSWPDADIEAKYCIEDCGWPSKKKAFECKISLLTGRTHQIRAQLADC 420
           WNLCQLEVLECREVSWPDADIEAKY IEDCGWPSKKKAFECKI+LLTGRTHQIRAQLADC
Sbjct: 361 WNLCQLEVLECREVSWPDADIEAKYYIEDCGWPSKKKAFECKINLLTGRTHQIRAQLADC 420

Query: 421 GAPLVGDSIYMPAAVAEMANPGLNPFGKCKKEYTSEEDKETAMAEWIARHGKEPAVAIGL 480
           GAPLVGDSIYMPAAVAEMANPGLNPFGKCKKEYTSEEDKETA+AEWIA+HGKEPAVAIGL
Sbjct: 421 GAPLVGDSIYMPAAVAEMANPGLNPFGKCKKEYTSEEDKETAVAEWIAQHGKEPAVAIGL 479

Query: 481 QAYEISWDLGEHIYNAGTPWWKHEQL 507
           QAYEISWD G+HIYNAGTPWWK EQL
Sbjct: 481 QAYEISWDSGKHIYNAGTPWWKLEQL 479

[Close]

BLAST of CcUC03G047170 vs. NCBI nr
Match: XP_008441255.1 (PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform X1 [Cucumis melo] >KAA0056872.1 RNA pseudouridine synthase 6 [Cucumis melo var. makuwa] >TYJ99375.1 RNA pseudouridine synthase 6 [Cucumis melo var. makuwa])

HSP 1 Score: 880.2 bits (2273), Expect = 1.7e-251
Identity = 437/494 (88.46%), Postives = 454/494 (91.90%), Query Frame = 0


Query: 512  MLASMNIVLVASHGCRGL-NTSLSLLRTLARTRASLSDATCGNYFAPRRSLSSKSRAFPC 571
            MLASMNI LVA+HGCRGL +TSLSLLRTLARTRAS S A+C +YFAPRRS SS S AFPC
Sbjct: 1    MLASMNIALVATHGCRGLGSTSLSLLRTLARTRASPSAASCCDYFAPRRSFSSISSAFPC 60

Query: 572  ESSITDVTVTKTTTNSAENGYPQYHRLLPCPSFNEPPRVEHMVVLEGGPVMEYISKSLDL 631
            +SSITDVTVTKT T+SAENGYPQYHRLLPCPSF++ PRVEHMVVLE GPVMEYI KSLDL
Sbjct: 61   KSSITDVTVTKTATDSAENGYPQYHRLLPCPSFSKLPRVEHMVVLEAGPVMEYICKSLDL 120

Query: 632  PPLYVADLIHFGAVYYALVCPQPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQK 691
            PPLYVADLIHFGAVYYALVCPQPP+TATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQK
Sbjct: 121  PPLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQK 180

Query: 692  TFRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTT 751
            TFRITHVDEFVEVGTYLRVHVHPKRFPRCY+IDWKSRIIAVTESYVVLDKPAGTSVGGTT
Sbjct: 181  TFRITHVDEFVEVGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESYVVLDKPAGTSVGGTT 240

Query: 752  DNIEESCATFATRALGLTSPLWTTHQIDNCTEG-VILARTKEYCSIFHRKIREKKVMKLY 811
            DNIEESCATFATRALGLTSPLWTTHQIDNCTEG VILARTKEYCSIFHRKIREK+VMK Y
Sbjct: 241  DNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKRVMKHY 300

Query: 812  LALAAAPVPMGIITHYMRPINMAPRLVSKGKTPFGRFKLLLLADFIDGWNVCQLEVLECR 871
            LAL+AAPVPMGIITHYMRPIN+APRLVSK              D IDGW +CQLEVLECR
Sbjct: 301  LALSAAPVPMGIITHYMRPINIAPRLVSK--------------DCIDGWILCQLEVLECR 360

Query: 872  EVAWPDADIEAKYCIEDCGWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMP 931
            EV+WPD DIEAKYC ED GWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMP
Sbjct: 361  EVSWPDVDIEAKYCFEDGGWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMP 420

Query: 932  AAVAEMASPGLNPFGKWKKEYTTEEDKEFAVTEWIALHGKEPAVAIGLQAYEISWDSGEH 991
            A VAEM SPGLNPFGK KKEYT+EEDKE AV EWIALHGKEPAVAIGLQAYEISWDS EH
Sbjct: 421  AVVAEMGSPGLNPFGKCKKEYTSEEDKETAVAEWIALHGKEPAVAIGLQAYEISWDSREH 480

Query: 992  IYNARTPWWKQEQL 1004
            IYNA TPWW+QEQL
Sbjct: 481  IYNAGTPWWRQEQL 480

[Close]

BLAST of CcUC03G047170 vs. ExPASy Swiss-Prot
Match: Q9SVS0 (RNA pseudouridine synthase 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g21770 PE=2 SV=1)

HSP 1 Score: 619.8 bits (1597), Expect = 5.5e-176
Identity = 312/493 (63.29%), Postives = 370/493 (75.05%), Query Frame = 0


Query: 14  GCRGLSISLTLLRTLARTHANLSSAICGNRFAARRSFSLNNSAFPCESSTTNLTVTQTAT 73
           G R L+  ++LLRTLA T    +     N+ + R  F  +   F C S     +  QT  
Sbjct: 9   GYRNLTAPVSLLRTLASTRVT-TPLFRSNKHSPR--FISSPKRFTCLSLLKTDSQNQTTL 68

Query: 74  NSAENGMEHAQTEINFRYPQYHRLLPCPSFNVPPRVEHLVVLEAGP-VMEYISKSLDLPP 133
           +S+ N            Y +Y+RL+PCP++N+PPR+EH+VVLE    V E+ISK LDLPP
Sbjct: 69  SSSSNS----------GYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPP 128

Query: 134 LYVADLIHFGAVYYALVCPQPPPTATPEEFRLFKKFTEPSFLKGRKSIKGKTVREAQNTF 193
           LYVADLI FGAV+YALVCP+PPPTATPEE  LF++ T PS LK R SIKGKTVREAQ TF
Sbjct: 129 LYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTF 188

Query: 194 RITHIDEFVEVGMYLRVYVHPKRFPRCYEIDWKSRIIAATDSYVVLDKPAGTSVGGTTNN 253
           R+TH +++ E G YLRV+VHPKR PRCYEIDWKSRI+A TDSYV+LDKPAGT+VGGTT+N
Sbjct: 189 RVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDN 248

Query: 254 IEETCVTFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVMKLYLA 313
           IEE+C TFA+RAL L  PL TTHQIDNCTEGCV+ ARTKEYCS+FH KIR K+V KLY A
Sbjct: 249 IEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRA 308

Query: 314 LAAAPLPMGIITHYMRPNNLAPRLVSKGRRFMCFGHFKHLLLADCIDGWNLCQLEVLECR 373
           LAAAPLP+GII+HYMRP N+APRLV++                D I GW+LCQLEVLEC+
Sbjct: 309 LAAAPLPIGIISHYMRPKNMAPRLVAE----------------DSIQGWHLCQLEVLECK 368

Query: 374 EVSWPDADIEAKYCIEDCGWPSKKKAFECKISLLTGRTHQIRAQLADCGAPLVGDSIYMP 433
           ++ WPDA  E K+ IEDCGW SK+ A+EC I+LLTG+THQIRAQLA CGAPLVGDS+YMP
Sbjct: 369 KIPWPDAATEKKHDIEDCGWTSKEFAYECTINLLTGKTHQIRAQLAACGAPLVGDSMYMP 428

Query: 434 AAVAEMANPGLNPFGKCKKEYTSEED-KETAMAEWIARHGKEPAVAIGLQAYEISW--DL 493
           AA+AEM NP  NP+GK KK YT EE+ KETA+AEWI RHGKEP V IGLQA +ISW  D 
Sbjct: 429 AAIAEMGNPDTNPYGKAKKHYTMEENQKETAVAEWIDRHGKEPRVGIGLQACQISWDDDD 472

Query: 494 GEHIYNAGTPWWK 503
           GEH Y AGTPWW+
Sbjct: 489 GEHFYEAGTPWWR 472

[Close]

BLAST of CcUC03G047170 vs. ExPASy Swiss-Prot
Match: A3BN26 (RNA pseudouridine synthase 6, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0660400 PE=2 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 2.2e-156
Identity = 267/427 (62.53%), Postives = 323/427 (75.64%), Query Frame = 0


Query: 578  TVTKTTTNSAENGYPQYHRLLPCPSFNEPPRVEHMVVLEGGPVMEYISKSLDLPPLYVAD 637
            T   T    A   YP Y RLLPCP  ++PPR+EH+V  E    +++IS+SL LPPLYVAD
Sbjct: 58   TSAATVEAPATAAYPVYGRLLPCPLQDDPPRIEHLVAREDEVAVDFISRSLTLPPLYVAD 117

Query: 638  LIHFGAVYYALVCPQPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHV 697
            LI FGAVYYALV PQPP  A PE +R+F++ TEPS L  RKSIKGKTVREAQKTFR+T  
Sbjct: 118  LIKFGAVYYALVAPQPPPHAAPEHVRIFREVTEPSVLCRRKSIKGKTVREAQKTFRVTDP 177

Query: 698  DEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESC 757
            ++ +E GTYLRVHVHPKRFPRCYEIDWKSR+IAVT++YVVLDKPA TSVGG TDNIEESC
Sbjct: 178  NQRLEAGTYLRVHVHPKRFPRCYEIDWKSRVIAVTDNYVVLDKPAATSVGGATDNIEESC 237

Query: 758  ATFATRALGLTSPLWTTHQIDNCTEG-VILARTKEYCSIFHRKIREKKVMKLYLALAAAP 817
              F +RALGL +PL TTHQIDNC+EG V+L++TKE+CS+FH  IREK+V K YLAL  AP
Sbjct: 238  VVFTSRALGLETPLMTTHQIDNCSEGCVVLSKTKEFCSVFHGMIREKQVNKRYLALTTAP 297

Query: 818  VPMGIITHYMRPINMAPRLVSKGKTPFGRFKLLLLADFIDGWNVCQLEVLECREVAWPDA 877
            V  GIITHYMRPIN APRLVS+              D I GW+VCQ+E+L+C++V WP +
Sbjct: 298  VSTGIITHYMRPINRAPRLVSE--------------DHIKGWHVCQMEILDCKKVPWPSS 357

Query: 878  DIEAKYCIEDCGWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMA 937
             I   + +++CGWP ++ AYECKINLLTG+THQIRAQLA  G P+VGDS YM AA+A + 
Sbjct: 358  LIRKVHKVDNCGWPQQEAAYECKINLLTGKTHQIRAQLAAIGTPIVGDSAYMTAAMAAIV 417

Query: 938  SPGLNPFGKWKKEYTTEEDKEFAVTEWIALHGKEPAVAIGLQAYEISWD-SGE-HIYNAR 997
            +P +NPFG+W + Y +E++K  AV  WI+ HGKEP   IGLQA EISWD  GE H Y A 
Sbjct: 418  NPSINPFGRWGQNYDSEDEKAAAVEAWISCHGKEPKSVIGLQASEISWDYEGEHHSYKAG 470

Query: 998  TPWWKQE 1002
             PWW+Q+
Sbjct: 478  VPWWRQD 470

[Close]

BLAST of CcUC03G047170 vs. ExPASy Swiss-Prot
Match: P43930 (Uncharacterized RNA pseudouridine synthase HI_0042 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_0042 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.2e-06
Identity = 49/203 (24.14%), Postives = 79/203 (38.92%), Query Frame = 0


Query: 228 IIAATDSYVVLDKPAGTSVGGTTNNIEETCVTFATRALGLTSPLWTTHQIDNCTEGCVIL 287
           ++     +++++K  G SV    +  E+       + L +   +W  H++D  T G +IL
Sbjct: 5   VVYQHSDFIIINKSEGISV--HKDQEEQGLTELVAKQLNVPK-VWLVHRLDKVTSGLLIL 64

Query: 288 ARTKEYCSIFHRKIREKKVMKLYLALAAAPLPMGIITHYMRPNNLAPRLVSKGRRFMCFG 347
           A   E  + F R   E K+ K YLAL                +N  P    K ++ +  G
Sbjct: 65  ALNAESAAEFSRLFSEHKIHKTYLAL----------------SNQKP----KKKQGLIIG 124

Query: 348 HFKHLLLADCIDGWNLCQLEVLECREVSWPDADIEAKYCIEDCGWPSKKKAFECKISLLT 407
             K          W LCQ +            D  A    E        + F  K    T
Sbjct: 125 DMKKAREG----AWKLCQTK------------DNPAITRFESVSCEPNLRLFILKPQ--T 166

Query: 408 GRTHQIRAQLADCGAPLVGDSIY 431
           G+THQ+R  +   G+P++GD +Y
Sbjct: 185 GKTHQLRVAMKSLGSPILGDGLY 166

[Close]

BLAST of CcUC03G047170 vs. ExPASy Swiss-Prot
Match: P59835 (Ribosomal large subunit pseudouridine synthase C OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) OX=233412 GN=rluC PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.7e-05
Identity = 62/224 (27.68%), Postives = 91/224 (40.62%), Query Frame = 0


Query: 225 KSRIIAATDSYVVLDKPAGTSVGGTTNNIEETCVTFATRALGLTSP-LWTTHQIDNCTEG 284
           +  I+   D  +VL+KP+G  V G +       V  A RAL   +  L   H+ID  T G
Sbjct: 95  EQHILYEDDVMLVLNKPSGIGVHGGSG--LSFGVIEALRALRPQARFLELVHRIDRDTSG 154

Query: 285 CVILARTKEYCSIFHRKIREKKVMKLYLALAAA--PLPMGIITHYMRPNNLAPRLVSKGR 344
            +++A+ +      H ++REK V K YLAL        + +I   +  N L       G 
Sbjct: 155 ILLVAKKRSALRALHEQLREKVVQKDYLALVRGQWQAHINVIKAPLLKNEL-----QSGE 214

Query: 345 RFMCFGHFKHLLLADCIDGWNLCQLEVLECREVSWPDADIEAKYCIEDCGWPSKKKAFEC 404
           R +                            +VS      E ++ IE+  +P+   A   
Sbjct: 215 RIV----------------------------KVSEQGKPSETRFSIEE-RYPN---ATLI 274

Query: 405 KISLLTGRTHQIRAQLADCGAPLVGDSIYMPAAV-AEMANPGLN 445
           K S +TGRTHQIR      G P+  D  Y   A  A++   GLN
Sbjct: 275 KASPITGRTHQIRVHTQYAGHPIACDDRYGDQAFDAKLKQAGLN 279

[Close]

BLAST of CcUC03G047170 vs. ExPASy Swiss-Prot
Match: Q8PHN2 (Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=rluD PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.7e-05
Identity = 52/206 (25.24%), Postives = 82/206 (39.81%), Query Frame = 0


Query: 228 IIAATDSYVVLDKPAGTSVGGTTNNIEETCVT---FATRALGLTSPLWTTHQIDNCTEGC 287
           ++   +  +V+DKPAG  V     N + T V    F   AL         H++D  T G 
Sbjct: 92  VLYEDEQVLVIDKPAGLVVHPGAGNPDRTLVNALLFRDPALASVPRAGVVHRLDKDTSGV 151

Query: 288 VILARTKEYCSIFHRKIREKKVMKLYLALAAAPLPMGIITHYMRPNNLAPRLVSKGRRFM 347
           +++ART +  +    ++  ++V + YLA+    L  G   +   P +  PR         
Sbjct: 152 MVVARTVQAQTALVEQLSAREVHRQYLAVVVGALVSGGTAN--APIDRHPR--------- 211

Query: 348 CFGHFKHLLLADCIDGWNLCQLEVLECREVSWPDADIEAKYCIEDCGWPSKKKAFECKIS 407
                  L +A   DG                   D    Y + +        A EC++ 
Sbjct: 212 -----DRLKMAVRDDG------------------RDAVTHYRLRERF--RAHTALECRLE 259

Query: 408 LLTGRTHQIRAQLADCGAPLVGDSIY 431
             TGRTHQIR  +A   +P+VGD +Y
Sbjct: 272 --TGRTHQIRVHMAHLKSPIVGDPLY 259

[Close]

BLAST of CcUC03G047170 vs. ExPASy TrEMBL
Match: A0A4D8YA08 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_000635 PE=4 SV=1)

HSP 1 Score: 1203.7 bits (3113), Expect = 0.0e+00
Identity = 596/914 (65.21%), Postives = 689/914 (75.38%), Query Frame = 0


Query: 91   YPQYHRLLPCPSFNVPPRVEHLVVLEAGPVMEYISKSLDLPPLYVADLIHFGAVYYALVC 150
            YP Y RLLPCPS N PPRVEH+VVLE GPV+EYISK+LD+PPL+VADLIHFGAV+YALVC
Sbjct: 37   YPPYERLLPCPSQNGPPRVEHMVVLEGGPVLEYISKALDIPPLFVADLIHFGAVFYALVC 96

Query: 151  PQPPPTATPEEFRLFKKFTEPSFLKGRKSIKGKTVREAQNTFRITHIDEFVEVGMYLRVY 210
            P PP TATPE+ + FKKFT+PS L+ R SIKGKT+REAQ TFRIT  DEFVE G YLRV+
Sbjct: 97   PDPPRTATPEQIKDFKKFTDPSLLRNRSSIKGKTIREAQKTFRITRTDEFVESGTYLRVH 156

Query: 211  VHPKRFPRCYEIDWKSRIIAATDSYVVLDKPAGTSVGGTTNNIEETCVTFATRALGLTSP 270
            VHPKRFPRCYEIDW+SRIIA T+SYVVLDKPAGTSVGGTT+NIEETC TF TRALGL  P
Sbjct: 157  VHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEETCATFTTRALGLDDP 216

Query: 271  LWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVMKLYLALAAAPLPMGIITHYMRPN 330
            L TTHQIDNCTEGCV+LAR KEYCS+FH KIR+KKV KLYLALAAAP+P+GI+THYMRP 
Sbjct: 217  LKTTHQIDNCTEGCVVLARIKEYCSVFHGKIRDKKVKKLYLALAAAPVPVGILTHYMRPV 276

Query: 331  NLAPRLVSKGRRFMCFGHFKHLLLADCIDGWNLCQLEVLECREVSWPDADIEAKYCIEDC 390
            N+APRLVS+                D I  W LCQLEVLEC++V WP+  IE +  I+ C
Sbjct: 277  NIAPRLVSE----------------DFISRWPLCQLEVLECKKVPWPNDIIEEQNKIDVC 336

Query: 391  GWPSKKKAFECKISLLTGRTHQIRAQLADCGAPLVGDSIYMPAAVAEMANPGLNPFGKCK 450
            GWP++  A+ECKI+LLTGRTHQIRAQLA  GAPLVGD++YMPA ++E   PGLNPFG  K
Sbjct: 337  GWPTRDFAYECKINLLTGRTHQIRAQLAARGAPLVGDTMYMPAVISEAEYPGLNPFGTNK 396

Query: 451  KEYTSEEDKETAMAEWIARHGKEPAVAIGLQAYEISWDLGEHIYNAGTPWWKHEQLQRLQ 510
            KEY++++ K TA+ EWIA HGKEP VAIGLQA  ISWD GEH Y AG+PWW++       
Sbjct: 397  KEYSNDDAKATAVEEWIAHHGKEPTVAIGLQACHISWDDGEHTYEAGSPWWRYH------ 456

Query: 511  RMLASMNIVLVASHGCRGLNTSLSLLRTLARTRASLSDATCGNYFAPRRSLSSKSRAFPC 570
                                  + L   L + R  +                        
Sbjct: 457  ----------------------IELTSNLMKARDRI------------------------ 516

Query: 571  ESSITDVTVTKTTTNSAENGYPQYHRLLPCPSFNEPPRVEHMVVLEGGPVMEYISKSLDL 630
            E  +  + +           YP Y RLLPCPS N PPRVEH+VVLEG PV+EYISK+LD+
Sbjct: 517  EIGLDQIAI-----------YPPYERLLPCPSQNGPPRVEHLVVLEGSPVLEYISKALDI 576

Query: 631  PPLYVADLIHFGAVYYALVCPQPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQK 690
            PPL+V+DLIHFGAV+YALVCP PP+TAT EQI+ FKKFT+PS L+ R SIKGKT+REAQK
Sbjct: 577  PPLFVSDLIHFGAVFYALVCPVPPRTATHEQIKAFKKFTDPSLLRNRSSIKGKTIREAQK 636

Query: 691  TFRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTT 750
            TFRIT  DEFVE GTYLRV+VHP+RFPRCYEIDW+SRIIAV ESYVVLDKPAGTSVGGT+
Sbjct: 637  TFRITCTDEFVESGTYLRVYVHPRRFPRCYEIDWRSRIIAVNESYVVLDKPAGTSVGGTS 696

Query: 751  DNIEESCATFATRALGLTSPLWTTHQIDNCTEG-VILARTKEYCSIFHRKIREKKVMKLY 810
            +NIEE+CATF TRALGL   L TTHQIDNCTEG ++LARTKEYCS+FH KIR+KKV KLY
Sbjct: 697  NNIEETCATFTTRALGLDDTLKTTHQIDNCTEGCIVLARTKEYCSVFHGKIRDKKVKKLY 756

Query: 811  LALAAAPVPMGIITHYMRPINMAPRLVSKGKTPFGRFKLLLLADFIDGWNVCQLEVLECR 870
            LALAAAPVP+GI+THYMRP+N+APRLVS+              DFI  W +CQLEVLEC+
Sbjct: 757  LALAAAPVPVGILTHYMRPVNIAPRLVSE--------------DFISDWPLCQLEVLECK 816

Query: 871  EVAWPDADIEAKYCIEDCGWPSKKKAYECKINLLTGRTHQ--IRAQLADCGAPLVGDSMY 930
            +V WP+  IE +  IE CGWP++  AYECKINLLTGRTHQ  IRAQLA CGAPLVGD+MY
Sbjct: 817  KVPWPNDIIEEQNKIEVCGWPNRDFAYECKINLLTGRTHQIRIRAQLAACGAPLVGDTMY 857

Query: 931  MPAAVAEMASPGLNPFGKWKKEYTTEEDKEFAVTEWIALHGKEPAVAIGLQAYEISWDSG 990
            MPA ++E    GLNPFG  KKEY++++ K  AV EWIA HGKEP VAI LQA  ISWD G
Sbjct: 877  MPAVISEAEYRGLNPFGPNKKEYSSDDAKATAVEEWIAHHGKEPTVAIALQACHISWDDG 857

Query: 991  EHIYNARTPWWKQE 1002
            EH Y A +PWW  +
Sbjct: 937  EHTYEAGSPWWSAD 857

[Close]

BLAST of CcUC03G047170 vs. ExPASy TrEMBL
Match: A0A103Y227 (Pseudouridine synthase, catalytic domain-containing protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_020653 PE=4 SV=1)

HSP 1 Score: 948.7 bits (2451), Expect = 1.9e-272
Identity = 504/942 (53.50%), Postives = 621/942 (65.92%), Query Frame = 0


Query: 88  NFRYPQYHRLLPCPSFNVPPR-VEHLVVLEAGPVMEYISKSLDLPPLYVADLIHFGAVYY 147
           + R+ +Y RLLPCP+ NV PR +EHLVV E GPV+++I+K+LDLPPLYVADLIHFGAVYY
Sbjct: 75  SIRHEEYGRLLPCPAENVLPRKIEHLVVKEGGPVLDFITKALDLPPLYVADLIHFGAVYY 134

Query: 148 ALVCPQPPPTATPEEFRLFKKFTEPSFLKGRKSIKGKTVREAQNTFRITHIDEFVEVGMY 207
           ALVCP+PP TATPEE +L+K+FT P  L+ R SI+GKTVREAQNTFRITHIDEFVEVG Y
Sbjct: 135 ALVCPKPPSTATPEEIKLYKEFTNPRVLRKRPSIEGKTVREAQNTFRITHIDEFVEVGTY 194

Query: 208 LRVYVHPKRFPRCYEIDWKSRIIAATDSYVVLDKPAGTSVGGTTNNIEETCVTFATRALG 267
           +RV+                                   VGGTT+NIEETC TFATRAL 
Sbjct: 195 VRVH-----------------------------------VGGTTDNIEETCATFATRALE 254

Query: 268 LTSPLWTTHQIDNCTEG-----------------------------CVILARTKEYCSIF 327
           LT+PL TTHQIDNCTEG                              V+LARTK+YCS+F
Sbjct: 255 LTTPLTTTHQIDNCTEGWYSLKFNSNHWLFVLSCVNEKTANLILFFSVVLARTKDYCSVF 314

Query: 328 HRKIREKKVMKLYLALAAAPLPMGIITHYMRPNNLAPRLVSKGRRFMCFGHFKHLLLADC 387
           HRKIREK+V KLYLALAAA +P G++THYMRP   AP+++S                 D 
Sbjct: 315 HRKIREKQVKKLYLALAAAYVPCGVMTHYMRPFRRAPKIISN----------------DF 374

Query: 388 IDGWNLCQLEVLECREVSWPDADIEAKYCIEDCGWPSKKKAFECKISLLTGRTHQIRAQL 447
           I+ WNLCQLEVLECR+V WP+A ++ +Y IED  WP+K+ A+ECKI+LLTGRTHQIRAQL
Sbjct: 375 IEEWNLCQLEVLECRKVPWPNALLQKEYGIEDFNWPNKEFAYECKINLLTGRTHQIRAQL 434

Query: 448 ADCGAPLVGDSIYMPAAVAEMANPGLNPFGKCKKEYTSEEDKETAMAEWIARHGKEPAVA 507
           A CGAP+VGDS+YMPAA+AE+A+PGLNPFGK KK++ SE D+E  + EW  +HGKEP VA
Sbjct: 435 AACGAPIVGDSMYMPAAIAELASPGLNPFGKYKKQFESEVDRECGIEEWAGKHGKEPGVA 494

Query: 508 IGLQAYEISWDLGEHIYNAGTPWWKHEQLQRLQRMLASMNIVLVASHGCRG-LNTSLSLL 567
           IGLQA +ISWD               E++  +                CR  +   +S+L
Sbjct: 495 IGLQACQISWD---------------EEMAMVP--------------NCRSFILAPVSML 554

Query: 568 RTLARTRASLSDAT--CGNYFAPRRSLSSK--SRAFPCESSITDVTVTKTTTNSAENGYP 627
           RTLA   +    +T  C + +    +   K  SRAF  +S+   + VT T ++     + 
Sbjct: 555 RTLAAATSHRHKSTSFCCSIWNSDFNFHKKNSSRAFSSDSA-ASLAVTSTPSSPNSMRHE 614

Query: 628 QYHRLLPCPSFNEPPRVEHMVVLEGGPVMEYISKSLDLPPLYVADLIHFGAVYYALVCPQ 687
           +Y RLLPCP+ +  PR+EH+VV +GGPV+++I+++L+LPPLYVADLIHFGAV+YALVCPQ
Sbjct: 615 EYGRLLPCPAESFLPRIEHLVVKDGGPVLDFITRALNLPPLYVADLIHFGAVFYALVCPQ 674

Query: 688 PPQTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGTYLRVHVH 747
           PP TATPE+I+L+K+ T+PS L+ R SIKGKT+REAQKTFRI H+DEFVE GTY+RVHV 
Sbjct: 675 PPSTATPEEIKLYKEVTDPSVLRKRSSIKGKTLREAQKTFRIAHIDEFVEAGTYVRVHVR 734

Query: 748 PKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTSPLW 807
           PKRFP                                                       
Sbjct: 735 PKRFP------------------------------------------------------- 794

Query: 808 TTHQIDNCTEGVILARTKEYCSIFHRKIREKKVMKLYLALAAAPVPMGIITHYMRPINMA 867
                      V+LARTK+YCS+FHRKIREK+V KLYLALAAA VP G++THYMRP  MA
Sbjct: 795 ----------SVVLARTKDYCSVFHRKIREKQVKKLYLALAAAYVPCGVMTHYMRPFRMA 854

Query: 868 PRLVSKGKTPFGRFKLLLLADFIDGWNVCQLEVLECREVAWPDADIEAKYCIEDCGWPSK 927
           P++VSK              DFI GWN+CQLEVLECR+V WP+A IE K+ IED  WPSK
Sbjct: 855 PKVVSK--------------DFIKGWNLCQLEVLECRKVPWPNALIEKKFGIEDFNWPSK 856

Query: 928 KKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPAAVAEMASPGLNPFGKWKKEYTT 987
           + AYECKINLLTGRTHQIRAQLA CGAP+VGDSMY PAA+ E+ASP +NPFGK+KK++ +
Sbjct: 915 EFAYECKINLLTGRTHQIRAQLAACGAPIVGDSMYTPAAILELASPEVNPFGKYKKQFKS 856

Query: 988 EEDKEFAVTEWIALHGKEPAVAIGLQAYEISWDSGEHIYNAR 995
           E D+E A+ +W A HGKEP VAIGLQA +ISWD GEH+   R
Sbjct: 975 EADRECAIEDWAAKHGKEPGVAIGLQACQISWDEGEHLKKGR 856

[Close]

BLAST of CcUC03G047170 vs. ExPASy TrEMBL
Match: A0A6J1GUJ2 (RNA pseudouridine synthase 6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111457066 PE=4 SV=1)

HSP 1 Score: 880.2 bits (2273), Expect = 8.3e-252
Identity = 430/493 (87.22%), Postives = 454/493 (92.09%), Query Frame = 0


Query: 512  MLASMNIVLVASHGCRGLNTSLSLLRTLARTRASLSDATCGNYFAPRRSLSSKSRAFPCE 571
            MLASMNI LVA++GCRGL TSL+L RTLARTRA+ S   CGNYFA RRSLSSKS AFPCE
Sbjct: 1    MLASMNIALVAANGCRGLGTSLALQRTLARTRANFSATACGNYFAARRSLSSKSSAFPCE 60

Query: 572  SSITDVTVTKTTTNSAENGYPQYHRLLPCPSFNEPPRVEHMVVLEGGPVMEYISKSLDLP 631
            SS+TDV VT++TT  AENGYPQYHRLLPCPSF+ PPRVEH+VVLEGGPVMEYISKSLDLP
Sbjct: 61   SSVTDVAVTQSTTTFAENGYPQYHRLLPCPSFSGPPRVEHLVVLEGGPVMEYISKSLDLP 120

Query: 632  PLYVADLIHFGAVYYALVCPQPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKT 691
            PLYVADLIHFGAVYYALVCPQPP TATPEQIRLFKKFT+PSFLKGRKSIKGKTVREAQKT
Sbjct: 121  PLYVADLIHFGAVYYALVCPQPPPTATPEQIRLFKKFTQPSFLKGRKSIKGKTVREAQKT 180

Query: 692  FRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTD 751
            FRIT +DEFVEVGTYLR+HVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTD
Sbjct: 181  FRITRIDEFVEVGTYLRIHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTD 240

Query: 752  NIEESCATFATRALGLTSPLWTTHQIDNCTEG-VILARTKEYCSIFHRKIREKKVMKLYL 811
            NIEESCATFATRALGLTSPLWTTHQIDNCTEG VILARTKEYCS+FHRKIREKKV KLYL
Sbjct: 241  NIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSVFHRKIREKKVKKLYL 300

Query: 812  ALAAAPVPMGIITHYMRPINMAPRLVSKGKTPFGRFKLLLLADFIDGWNVCQLEVLECRE 871
            ALAAAPVP+GIITHYMRPIN+APRLVS+              D IDG+N+CQLEVLECRE
Sbjct: 301  ALAAAPVPIGIITHYMRPINIAPRLVSE--------------DCIDGYNLCQLEVLECRE 360

Query: 872  VAWPDADIEAKYCIEDCGWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMPA 931
            VAWPDADIEAKYCIE+CGWPSK KAYECKINLLTGRTHQIRAQLA+CGAPLVGDSMYMPA
Sbjct: 361  VAWPDADIEAKYCIEECGWPSKTKAYECKINLLTGRTHQIRAQLANCGAPLVGDSMYMPA 420

Query: 932  AVAEMASPGLNPFGKWKKEYTTEEDKEFAVTEWIALHGKEPAVAIGLQAYEISWDSGEHI 991
            AVAEMA+PGLNPFGK KKEY +EEDKE AVTEWI+ HGKEPA+AIGLQAYEISWDS EHI
Sbjct: 421  AVAEMANPGLNPFGKCKKEYASEEDKESAVTEWISRHGKEPAMAIGLQAYEISWDSMEHI 479

Query: 992  YNARTPWWKQEQL 1004
            YNA TPWWKQEQL
Sbjct: 481  YNAGTPWWKQEQL 479

[Close]

BLAST of CcUC03G047170 vs. ExPASy TrEMBL
Match: A0A5D3BM17 (RNA pseudouridine synthase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005930 PE=4 SV=1)

HSP 1 Score: 880.2 bits (2273), Expect = 8.3e-252
Identity = 437/494 (88.46%), Postives = 454/494 (91.90%), Query Frame = 0


Query: 512  MLASMNIVLVASHGCRGL-NTSLSLLRTLARTRASLSDATCGNYFAPRRSLSSKSRAFPC 571
            MLASMNI LVA+HGCRGL +TSLSLLRTLARTRAS S A+C +YFAPRRS SS S AFPC
Sbjct: 1    MLASMNIALVATHGCRGLGSTSLSLLRTLARTRASPSAASCCDYFAPRRSFSSISSAFPC 60

Query: 572  ESSITDVTVTKTTTNSAENGYPQYHRLLPCPSFNEPPRVEHMVVLEGGPVMEYISKSLDL 631
            +SSITDVTVTKT T+SAENGYPQYHRLLPCPSF++ PRVEHMVVLE GPVMEYI KSLDL
Sbjct: 61   KSSITDVTVTKTATDSAENGYPQYHRLLPCPSFSKLPRVEHMVVLEAGPVMEYICKSLDL 120

Query: 632  PPLYVADLIHFGAVYYALVCPQPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQK 691
            PPLYVADLIHFGAVYYALVCPQPP+TATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQK
Sbjct: 121  PPLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQK 180

Query: 692  TFRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTT 751
            TFRITHVDEFVEVGTYLRVHVHPKRFPRCY+IDWKSRIIAVTESYVVLDKPAGTSVGGTT
Sbjct: 181  TFRITHVDEFVEVGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESYVVLDKPAGTSVGGTT 240

Query: 752  DNIEESCATFATRALGLTSPLWTTHQIDNCTEG-VILARTKEYCSIFHRKIREKKVMKLY 811
            DNIEESCATFATRALGLTSPLWTTHQIDNCTEG VILARTKEYCSIFHRKIREK+VMK Y
Sbjct: 241  DNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKRVMKHY 300

Query: 812  LALAAAPVPMGIITHYMRPINMAPRLVSKGKTPFGRFKLLLLADFIDGWNVCQLEVLECR 871
            LAL+AAPVPMGIITHYMRPIN+APRLVSK              D IDGW +CQLEVLECR
Sbjct: 301  LALSAAPVPMGIITHYMRPINIAPRLVSK--------------DCIDGWILCQLEVLECR 360

Query: 872  EVAWPDADIEAKYCIEDCGWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMP 931
            EV+WPD DIEAKYC ED GWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMP
Sbjct: 361  EVSWPDVDIEAKYCFEDGGWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMP 420

Query: 932  AAVAEMASPGLNPFGKWKKEYTTEEDKEFAVTEWIALHGKEPAVAIGLQAYEISWDSGEH 991
            A VAEM SPGLNPFGK KKEYT+EEDKE AV EWIALHGKEPAVAIGLQAYEISWDS EH
Sbjct: 421  AVVAEMGSPGLNPFGKCKKEYTSEEDKETAVAEWIALHGKEPAVAIGLQAYEISWDSREH 480

Query: 992  IYNARTPWWKQEQL 1004
            IYNA TPWW+QEQL
Sbjct: 481  IYNAGTPWWRQEQL 480

[Close]

BLAST of CcUC03G047170 vs. ExPASy TrEMBL
Match: A0A1S3B303 (RNA pseudouridine synthase 6, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC107990285 PE=4 SV=1)

HSP 1 Score: 880.2 bits (2273), Expect = 8.3e-252
Identity = 437/494 (88.46%), Postives = 454/494 (91.90%), Query Frame = 0


Query: 512  MLASMNIVLVASHGCRGL-NTSLSLLRTLARTRASLSDATCGNYFAPRRSLSSKSRAFPC 571
            MLASMNI LVA+HGCRGL +TSLSLLRTLARTRAS S A+C +YFAPRRS SS S AFPC
Sbjct: 1    MLASMNIALVATHGCRGLGSTSLSLLRTLARTRASPSAASCCDYFAPRRSFSSISSAFPC 60

Query: 572  ESSITDVTVTKTTTNSAENGYPQYHRLLPCPSFNEPPRVEHMVVLEGGPVMEYISKSLDL 631
            +SSITDVTVTKT T+SAENGYPQYHRLLPCPSF++ PRVEHMVVLE GPVMEYI KSLDL
Sbjct: 61   KSSITDVTVTKTATDSAENGYPQYHRLLPCPSFSKLPRVEHMVVLEAGPVMEYICKSLDL 120

Query: 632  PPLYVADLIHFGAVYYALVCPQPPQTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQK 691
            PPLYVADLIHFGAVYYALVCPQPP+TATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQK
Sbjct: 121  PPLYVADLIHFGAVYYALVCPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQK 180

Query: 692  TFRITHVDEFVEVGTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTT 751
            TFRITHVDEFVEVGTYLRVHVHPKRFPRCY+IDWKSRIIAVTESYVVLDKPAGTSVGGTT
Sbjct: 181  TFRITHVDEFVEVGTYLRVHVHPKRFPRCYDIDWKSRIIAVTESYVVLDKPAGTSVGGTT 240

Query: 752  DNIEESCATFATRALGLTSPLWTTHQIDNCTEG-VILARTKEYCSIFHRKIREKKVMKLY 811
            DNIEESCATFATRALGLTSPLWTTHQIDNCTEG VILARTKEYCSIFHRKIREK+VMK Y
Sbjct: 241  DNIEESCATFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKRVMKHY 300

Query: 812  LALAAAPVPMGIITHYMRPINMAPRLVSKGKTPFGRFKLLLLADFIDGWNVCQLEVLECR 871
            LAL+AAPVPMGIITHYMRPIN+APRLVSK              D IDGW +CQLEVLECR
Sbjct: 301  LALSAAPVPMGIITHYMRPINIAPRLVSK--------------DCIDGWILCQLEVLECR 360

Query: 872  EVAWPDADIEAKYCIEDCGWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMP 931
            EV+WPD DIEAKYC ED GWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMP
Sbjct: 361  EVSWPDVDIEAKYCFEDGGWPSKKKAYECKINLLTGRTHQIRAQLADCGAPLVGDSMYMP 420

Query: 932  AAVAEMASPGLNPFGKWKKEYTTEEDKEFAVTEWIALHGKEPAVAIGLQAYEISWDSGEH 991
            A VAEM SPGLNPFGK KKEYT+EEDKE AV EWIALHGKEPAVAIGLQAYEISWDS EH
Sbjct: 421  AVVAEMGSPGLNPFGKCKKEYTSEEDKETAVAEWIALHGKEPAVAIGLQAYEISWDSREH 480

Query: 992  IYNARTPWWKQEQL 1004
            IYNA TPWW+QEQL
Sbjct: 481  IYNAGTPWWRQEQL 480

[Close]

BLAST of CcUC03G047170 vs. TAIR 10
Match: AT4G21770.1 (Pseudouridine synthase family protein )

HSP 1 Score: 619.8 bits (1597), Expect = 3.9e-177
Identity = 312/493 (63.29%), Postives = 370/493 (75.05%), Query Frame = 0


Query: 14  GCRGLSISLTLLRTLARTHANLSSAICGNRFAARRSFSLNNSAFPCESSTTNLTVTQTAT 73
           G R L+  ++LLRTLA T    +     N+ + R  F  +   F C S     +  QT  
Sbjct: 9   GYRNLTAPVSLLRTLASTRVT-TPLFRSNKHSPR--FISSPKRFTCLSLLKTDSQNQTTL 68

Query: 74  NSAENGMEHAQTEINFRYPQYHRLLPCPSFNVPPRVEHLVVLEAGP-VMEYISKSLDLPP 133
           +S+ N            Y +Y+RL+PCP++N+PPR+EH+VVLE    V E+ISK LDLPP
Sbjct: 69  SSSSNS----------GYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPP 128

Query: 134 LYVADLIHFGAVYYALVCPQPPPTATPEEFRLFKKFTEPSFLKGRKSIKGKTVREAQNTF 193
           LYVADLI FGAV+YALVCP+PPPTATPEE  LF++ T PS LK R SIKGKTVREAQ TF
Sbjct: 129 LYVADLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTF 188

Query: 194 RITHIDEFVEVGMYLRVYVHPKRFPRCYEIDWKSRIIAATDSYVVLDKPAGTSVGGTTNN 253
           R+TH +++ E G YLRV+VHPKR PRCYEIDWKSRI+A TDSYV+LDKPAGT+VGGTT+N
Sbjct: 189 RVTHTNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDN 248

Query: 254 IEETCVTFATRALGLTSPLWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVMKLYLA 313
           IEE+C TFA+RAL L  PL TTHQIDNCTEGCV+ ARTKEYCS+FH KIR K+V KLY A
Sbjct: 249 IEESCATFASRALDLPEPLKTTHQIDNCTEGCVVFARTKEYCSVFHTKIRNKEVKKLYRA 308

Query: 314 LAAAPLPMGIITHYMRPNNLAPRLVSKGRRFMCFGHFKHLLLADCIDGWNLCQLEVLECR 373
           LAAAPLP+GII+HYMRP N+APRLV++                D I GW+LCQLEVLEC+
Sbjct: 309 LAAAPLPIGIISHYMRPKNMAPRLVAE----------------DSIQGWHLCQLEVLECK 368

Query: 374 EVSWPDADIEAKYCIEDCGWPSKKKAFECKISLLTGRTHQIRAQLADCGAPLVGDSIYMP 433
           ++ WPDA  E K+ IEDCGW SK+ A+EC I+LLTG+THQIRAQLA CGAPLVGDS+YMP
Sbjct: 369 KIPWPDAATEKKHDIEDCGWTSKEFAYECTINLLTGKTHQIRAQLAACGAPLVGDSMYMP 428

Query: 434 AAVAEMANPGLNPFGKCKKEYTSEED-KETAMAEWIARHGKEPAVAIGLQAYEISW--DL 493
           AA+AEM NP  NP+GK KK YT EE+ KETA+AEWI RHGKEP V IGLQA +ISW  D 
Sbjct: 429 AAIAEMGNPDTNPYGKAKKHYTMEENQKETAVAEWIDRHGKEPRVGIGLQACQISWDDDD 472

Query: 494 GEHIYNAGTPWWK 503
           GEH Y AGTPWW+
Sbjct: 489 GEHFYEAGTPWWR 472

The following BLAST results are available for this feature:

BLAST of CcUC03G047170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6420484.1	0.0e+00	61.91	hypothetical protein SASPL_117014 [Salvia splendens]	[more]
KVI01079.1	3.9e-272	53.50	Pseudouridine synthase, catalytic domain-containing protein [Cynara cardunculus ...	[more]
XP_038894645.1	4.8e-262	91.48	RNA pseudouridine synthase 6, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_038894435.1	5.7e-255	87.75	RNA pseudouridine synthase 6, chloroplastic-like isoform X1 [Benincasa hispida]	[more]
XP_008441255.1	1.7e-251	88.46	PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform X1 [Cucumis ...	[more]

BLAST of CcUC03G047170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVS0	5.5e-176	63.29	RNA pseudouridine synthase 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
A3BN26	2.2e-156	62.53	RNA pseudouridine synthase 6, chloroplastic OS=Oryza sativa subsp. japonica OX=3...	[more]
P43930	9.2e-06	24.14	Uncharacterized RNA pseudouridine synthase HI_0042 OS=Haemophilus influenzae (st...	[more]
P59835	2.7e-05	27.68	Ribosomal large subunit pseudouridine synthase C OS=Haemophilus ducreyi (strain ...	[more]
Q8PHN2	2.7e-05	25.24	Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas axonopodis pv. c...	[more]

BLAST of CcUC03G047170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D8YA08	0.0e+00	65.21	Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_000635 PE=4 SV=1	[more]
A0A103Y227	1.9e-272	53.50	Pseudouridine synthase, catalytic domain-containing protein OS=Cynara cardunculu...	[more]
A0A6J1GUJ2	8.3e-252	87.22	RNA pseudouridine synthase 6, chloroplastic-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A5D3BM17	8.3e-252	88.46	RNA pseudouridine synthase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3B303	8.3e-252	88.46	RNA pseudouridine synthase 6, chloroplastic-like isoform X1 OS=Cucumis melo OX=3...	[more]

BLAST of CcUC03G047170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21770.1	3.9e-177	63.29	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006145	Pseudouridine synthase, RsuA/RluA-like	PFAM	PF00849	PseudoU_synth_2	coord: 735..915 e-value: 2.4E-17 score: 63.5 coord: 235..418 e-value: 1.8E-19 score: 70.4
IPR006145	Pseudouridine synthase, RsuA/RluA-like	CDD	cd02869	PseudoU_synth_RluA_like	coord: 235..443 e-value: 2.29826E-22 score: 93.556
IPR006145	Pseudouridine synthase, RsuA/RluA-like	CDD	cd02869	PseudoU_synth_RluA_like	coord: 735..940 e-value: 1.60915E-26 score: 105.497
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 220..488 e-value: 8.5E-27 score: 96.1 coord: 720..988 e-value: 1.6E-23 score: 85.4
None	No IPR available	PANTHER	PTHR21600:SF52	RNA PSEUDOURIDINE SYNTHASE 6, CHLOROPLASTIC	coord: 530..998 coord: 19..501
None	No IPR available	PANTHER	PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	coord: 530..998 coord: 19..501
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 219..437
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 720..934

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC03G047170.1	CcUC03G047170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000455	enzyme-directed rRNA pseudouridine synthesis
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding