CcUC03G047060 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC03G047060
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionDUF4228 domain-containing protein
LocationCicolChr03: 4970449 .. 4970787 (+)
RNA-Seq ExpressionCcUC03G047060
SyntenyCcUC03G047060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAACTGTTGTAGAAGCCAATCATCTACAATGATCTTCTCCGGTGACGATTGGGGCTCCTTCAGTTCCAAGCACAGCCGTGGCTGCGGCGGAAACGCCACAACCTCCGGCGGCGATCCAGAGAAGCATAGACTACTTGGAGGGAAGGAAGCAGCGTCGTGTGCGCAGCCCCAAGTGAAGATCAAGATGACGAAGAGAGAGCTTGAGGATCTGGAGATGCAAGGATTGAGTCTAGAACAAGTTATTGGTCGATTGGTGAACGACGAAGATGAATTTGATGTTGAGCATCATCGATCGTGGAGGCCTTCCCTTCAAAGCATTCCAGAGGATTACTGA

mRNA sequence

ATGGGCAACTGTTGTAGAAGCCAATCATCTACAATGATCTTCTCCGGTGACGATTGGGGCTCCTTCAGTTCCAAGCACAGCCGTGGCTGCGGCGGAAACGCCACAACCTCCGGCGGCGATCCAGAGAAGCATAGACTACTTGGAGGGAAGGAAGCAGCGTCGTGTGCGCAGCCCCAAGTGAAGATCAAGATGACGAAGAGAGAGCTTGAGGATCTGGAGATGCAAGGATTGAGTCTAGAACAAGTTATTGGTCGATTGGTGAACGACGAAGATGAATTTGATGTTGAGCATCATCGATCGTGGAGGCCTTCCCTTCAAAGCATTCCAGAGGATTACTGA

Coding sequence (CDS)

ATGGGCAACTGTTGTAGAAGCCAATCATCTACAATGATCTTCTCCGGTGACGATTGGGGCTCCTTCAGTTCCAAGCACAGCCGTGGCTGCGGCGGAAACGCCACAACCTCCGGCGGCGATCCAGAGAAGCATAGACTACTTGGAGGGAAGGAAGCAGCGTCGTGTGCGCAGCCCCAAGTGAAGATCAAGATGACGAAGAGAGAGCTTGAGGATCTGGAGATGCAAGGATTGAGTCTAGAACAAGTTATTGGTCGATTGGTGAACGACGAAGATGAATTTGATGTTGAGCATCATCGATCGTGGAGGCCTTCCCTTCAAAGCATTCCAGAGGATTACTGA

Protein sequence

MGNCCRSQSSTMIFSGDDWGSFSSKHSRGCGGNATTSGGDPEKHRLLGGKEAASCAQPQVKIKMTKRELEDLEMQGLSLEQVIGRLVNDEDEFDVEHHRSWRPSLQSIPEDY
Homology
BLAST of CcUC03G047060 vs. NCBI nr
Match: XP_038895954.1 (uncharacterized protein LOC120084128 [Benincasa hispida])

HSP 1 Score: 196.8 bits (499), Expect = 9.8e-47
Identity = 100/117 (85.47%), Postives = 107/117 (91.45%), Query Frame = 0

Query: 1   MGNCCRSQSSTMIFSGDDWGSFSSKHSRGCGGNATTSGGDPEKHRLLGGKEAASCAQPQV 60
           MGNCCRSQSSTM+F GDDWGSFSSKH RG GGNATTSGGDPEK+RLLG KEAASC+QPQV
Sbjct: 1   MGNCCRSQSSTMVFVGDDWGSFSSKHGRGRGGNATTSGGDPEKYRLLGEKEAASCSQPQV 60

Query: 61  KIKMTKRELED----LEMQGLSLEQVIGRLV-NDEDEFDVEHHRSWRPSLQSIPEDY 113
           KIKM+KRELED    LEMQG+SLEQVIGR+V N EDEF+VEHHRSWRPSLQSIPEDY
Sbjct: 61  KIKMSKRELEDLVKKLEMQGMSLEQVIGRMVMNGEDEFEVEHHRSWRPSLQSIPEDY 117

BLAST of CcUC03G047060 vs. NCBI nr
Match: KAA0056859.1 (DUF4228 domain-containing protein [Cucumis melo var. makuwa] >TYJ99362.1 DUF4228 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 4.9e-46
Identity = 96/117 (82.05%), Postives = 106/117 (90.60%), Query Frame = 0

Query: 1   MGNCCRSQSSTMIFSGDDWGSFSSKHSRGCGGNATTSGGDPEKHRLLGG-KEAASCAQPQ 60
           MGNCCRSQSSTM+F+GDDWGSFSSKH RGCGGNATTSGGDPEKHRLLG  KEAASC+QP 
Sbjct: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGCGGNATTSGGDPEKHRLLGDQKEAASCSQPL 60

Query: 61  VKIKMTKRELE----DLEMQGLSLEQVIGRLVNDEDEFDVEHHRSWRPSLQSIPEDY 113
           VKIKMTKRELE     LEMQGL+LEQVIGR++  E+E+++EHHRSWRPSLQSIPEDY
Sbjct: 61  VKIKMTKRELEVLVKKLEMQGLTLEQVIGRMMKGEEEYEIEHHRSWRPSLQSIPEDY 117

BLAST of CcUC03G047060 vs. NCBI nr
Match: XP_022933211.1 (uncharacterized protein LOC111440057 [Cucurbita moschata])

HSP 1 Score: 187.6 bits (475), Expect = 5.9e-44
Identity = 93/114 (81.58%), Postives = 102/114 (89.47%), Query Frame = 0

Query: 1   MGNCCRSQSSTMIFSGDDWGSFSSKHSRGCGGNATTSGGDPEKHRLLGGKEAASCAQPQV 60
           MGNCCRSQSSTMIF+GDDWGSFSSKH RG GGNA+TS GDPEK+RLLG K+ +SC QPQV
Sbjct: 1   MGNCCRSQSSTMIFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQV 60

Query: 61  KIKMTKRELED----LEMQGLSLEQVIGRLVNDEDEFDVEHHRSWRPSLQSIPE 111
           KIKMTKRELED    LE++GLSLEQVIGR++NDEDEF  EHHRSWRPSLQSIPE
Sbjct: 61  KIKMTKRELEDLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

BLAST of CcUC03G047060 vs. NCBI nr
Match: KAG6584086.1 (hypothetical protein SDJN03_20018, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019687.1 hypothetical protein SDJN02_18650, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187.2 bits (474), Expect = 7.8e-44
Identity = 93/114 (81.58%), Postives = 101/114 (88.60%), Query Frame = 0

Query: 1   MGNCCRSQSSTMIFSGDDWGSFSSKHSRGCGGNATTSGGDPEKHRLLGGKEAASCAQPQV 60
           MGNCCRSQSSTMIF+GDDWGSFSSKH RG GGNA+TS GDPEK+RLLG K+ +SC QPQV
Sbjct: 1   MGNCCRSQSSTMIFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQV 60

Query: 61  KIKMTKRELED----LEMQGLSLEQVIGRLVNDEDEFDVEHHRSWRPSLQSIPE 111
           KIKMTKRELED    LE++GLSLEQVIGR+ NDEDEF  EHHRSWRPSLQSIPE
Sbjct: 61  KIKMTKRELEDLVKNLEIEGLSLEQVIGRMTNDEDEFQGEHHRSWRPSLQSIPE 114

BLAST of CcUC03G047060 vs. NCBI nr
Match: XP_023001321.1 (uncharacterized protein LOC111495485 [Cucurbita maxima])

HSP 1 Score: 184.5 bits (467), Expect = 5.0e-43
Identity = 91/114 (79.82%), Postives = 101/114 (88.60%), Query Frame = 0

Query: 1   MGNCCRSQSSTMIFSGDDWGSFSSKHSRGCGGNATTSGGDPEKHRLLGGKEAASCAQPQV 60
           MGNCCRSQSSTM+F+GDDWGSFSSKH RG GGNA+ S GDPEK+RLLG K+ +SC QPQV
Sbjct: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGRGGNASASRGDPEKYRLLGEKQTSSCPQPQV 60

Query: 61  KIKMTKRELED----LEMQGLSLEQVIGRLVNDEDEFDVEHHRSWRPSLQSIPE 111
           KIKMTKRELED    LE++GLSLEQVIGR++NDEDEF  EHHRSWRPSLQSIPE
Sbjct: 61  KIKMTKRELEDLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

BLAST of CcUC03G047060 vs. ExPASy TrEMBL
Match: A0A5A7UTK3 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005800 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.4e-46
Identity = 96/117 (82.05%), Postives = 106/117 (90.60%), Query Frame = 0

Query: 1   MGNCCRSQSSTMIFSGDDWGSFSSKHSRGCGGNATTSGGDPEKHRLLGG-KEAASCAQPQ 60
           MGNCCRSQSSTM+F+GDDWGSFSSKH RGCGGNATTSGGDPEKHRLLG  KEAASC+QP 
Sbjct: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGCGGNATTSGGDPEKHRLLGDQKEAASCSQPL 60

Query: 61  VKIKMTKRELE----DLEMQGLSLEQVIGRLVNDEDEFDVEHHRSWRPSLQSIPEDY 113
           VKIKMTKRELE     LEMQGL+LEQVIGR++  E+E+++EHHRSWRPSLQSIPEDY
Sbjct: 61  VKIKMTKRELEVLVKKLEMQGLTLEQVIGRMMKGEEEYEIEHHRSWRPSLQSIPEDY 117

BLAST of CcUC03G047060 vs. ExPASy TrEMBL
Match: A0A0A0LRL1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063490 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.6e-45
Identity = 95/118 (80.51%), Postives = 103/118 (87.29%), Query Frame = 0

Query: 1   MGNCCRSQSSTMIFSGDDWGSFSSKHSRGCGGN--ATTSGGDPEKHRLLGGKEAASCAQP 60
           MGNCCRSQSSTM+F+GDDWGSFSSKH RGCG N  A TSGGDPEKHRLLG KEA SC+QP
Sbjct: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGCGRNVSAATSGGDPEKHRLLGEKEAGSCSQP 60

Query: 61  QVKIKMTKRELE----DLEMQGLSLEQVIGRLVNDEDEFDVEHHRSWRPSLQSIPEDY 113
            VKIKMTKRELE     LEMQGLSLEQVIGR++  E+EF++EHHRSWRPSLQSIPEDY
Sbjct: 61  LVKIKMTKRELEVLVKKLEMQGLSLEQVIGRMMKGEEEFEIEHHRSWRPSLQSIPEDY 118

BLAST of CcUC03G047060 vs. ExPASy TrEMBL
Match: A0A6J1EYG4 (uncharacterized protein LOC111440057 OS=Cucurbita moschata OX=3662 GN=LOC111440057 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.9e-44
Identity = 93/114 (81.58%), Postives = 102/114 (89.47%), Query Frame = 0

Query: 1   MGNCCRSQSSTMIFSGDDWGSFSSKHSRGCGGNATTSGGDPEKHRLLGGKEAASCAQPQV 60
           MGNCCRSQSSTMIF+GDDWGSFSSKH RG GGNA+TS GDPEK+RLLG K+ +SC QPQV
Sbjct: 1   MGNCCRSQSSTMIFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQV 60

Query: 61  KIKMTKRELED----LEMQGLSLEQVIGRLVNDEDEFDVEHHRSWRPSLQSIPE 111
           KIKMTKRELED    LE++GLSLEQVIGR++NDEDEF  EHHRSWRPSLQSIPE
Sbjct: 61  KIKMTKRELEDLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

BLAST of CcUC03G047060 vs. ExPASy TrEMBL
Match: A0A6J1KIA5 (uncharacterized protein LOC111495485 OS=Cucurbita maxima OX=3661 GN=LOC111495485 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.4e-43
Identity = 91/114 (79.82%), Postives = 101/114 (88.60%), Query Frame = 0

Query: 1   MGNCCRSQSSTMIFSGDDWGSFSSKHSRGCGGNATTSGGDPEKHRLLGGKEAASCAQPQV 60
           MGNCCRSQSSTM+F+GDDWGSFSSKH RG GGNA+ S GDPEK+RLLG K+ +SC QPQV
Sbjct: 1   MGNCCRSQSSTMVFAGDDWGSFSSKHGRGRGGNASASRGDPEKYRLLGEKQTSSCPQPQV 60

Query: 61  KIKMTKRELED----LEMQGLSLEQVIGRLVNDEDEFDVEHHRSWRPSLQSIPE 111
           KIKMTKRELED    LE++GLSLEQVIGR++NDEDEF  EHHRSWRPSLQSIPE
Sbjct: 61  KIKMTKRELEDLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE 114

BLAST of CcUC03G047060 vs. ExPASy TrEMBL
Match: A0A1S3BEX3 (uncharacterized protein LOC103489132 OS=Cucumis melo OX=3656 GN=LOC103489132 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 85/106 (80.19%), Postives = 95/106 (89.62%), Query Frame = 0

Query: 12  MIFSGDDWGSFSSKHSRGCGGNATTSGGDPEKHRLLGG-KEAASCAQPQVKIKMTKRELE 71
           M+F+GDDWGSFSSKH RGCGGNATTSGGDPEKHRLLG  KEAASC+QP VKIKMTKRELE
Sbjct: 1   MVFAGDDWGSFSSKHGRGCGGNATTSGGDPEKHRLLGDQKEAASCSQPLVKIKMTKRELE 60

Query: 72  ----DLEMQGLSLEQVIGRLVNDEDEFDVEHHRSWRPSLQSIPEDY 113
                LEMQGL+LEQVIGR++  E+E+++EHHRSWRPSLQSIPEDY
Sbjct: 61  VLVKKLEMQGLTLEQVIGRMMKGEEEYEIEHHRSWRPSLQSIPEDY 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038895954.19.8e-4785.47uncharacterized protein LOC120084128 [Benincasa hispida][more]
KAA0056859.14.9e-4682.05DUF4228 domain-containing protein [Cucumis melo var. makuwa] >TYJ99362.1 DUF4228... [more]
XP_022933211.15.9e-4481.58uncharacterized protein LOC111440057 [Cucurbita moschata][more]
KAG6584086.17.8e-4481.58hypothetical protein SDJN03_20018, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023001321.15.0e-4379.82uncharacterized protein LOC111495485 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UTK32.4e-4682.05DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A0A0LRL17.6e-4580.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063490 PE=4 SV=1[more]
A0A6J1EYG42.9e-4481.58uncharacterized protein LOC111440057 OS=Cucurbita moschata OX=3662 GN=LOC1114400... [more]
A0A6J1KIA52.4e-4379.82uncharacterized protein LOC111495485 OS=Cucurbita maxima OX=3661 GN=LOC111495485... [more]
A0A1S3BEX31.6e-3980.19uncharacterized protein LOC103489132 OS=Cucumis melo OX=3656 GN=LOC103489132 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 62..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..52
NoneNo IPR availablePANTHERPTHR33647:SF10DOMAIN PROTEIN, PUTATIVE-RELATEDcoord: 1..110
NoneNo IPR availablePANTHERPTHR33647OS01G0793900 PROTEINcoord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC03G047060.1CcUC03G047060.1mRNA