CcUC03G046820 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC03G046820
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionAgglutinin domain-containing protein
LocationCicolChr03: 4767009 .. 4767407 (+)
RNA-Seq ExpressionCcUC03G046820
SyntenyCcUC03G046820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCTAGATGTGGAAACAAGCATTATCAAATCGAGTGTTCCTACAATTTTTGAGGATAAGCTTGCAATTGGATCGGAGTTTTTAGGAGAATATGAATGGGGAGAAGCAAAGAACTTGACGAAGAAGGTGGATACTGTGCATAGGGTTCTAGTGCAGCTATTGAGGAAGGTTAGAGTGAATTTGGTGGCCACACAAGCTTCATACGATGTGCCATTCTCTTACACACAGAACGATACTCTCATCAATGGCCAAAACATTACACTGAACATGGAAGATGACATTTACAATGGAGTCAATATTTACAACTTTAAGTTTGATCAAGAATCGTTGCAGTTGTGTGAATGTCGGAAAATGGCAGTTTCATTCAATGTGTATTGTGTTTTATTTTGTCTTTAA

mRNA sequence

ATGAAGCTAGATGTGGAAACAAGCATTATCAAATCGAGTGTTCCTACAATTTTTGAGGATAAGCTTGCAATTGGATCGGAGTTTTTAGGAGAATATGAATGGGGAGAAGCAAAGAACTTGACGAAGAAGGTGGATACTGTGCATAGGGTTCTAGTGCAGCTATTGAGGAAGGTTAGAGTGAATTTGGTGGCCACACAAGCTTCATACGATGTGCCATTCTCTTACACACAGAACGATACTCTCATCAATGGCCAAAACATTACACTGAACATGGAAGATGACATTTACAATGGAGTCAATATTTACAACTTTAAGTTTGATCAAGAATCGTTGCAGTTGTGTGAATGTCGGAAAATGGCAGTTTCATTCAATGTGTATTGTGTTTTATTTTGTCTTTAA

Coding sequence (CDS)

ATGAAGCTAGATGTGGAAACAAGCATTATCAAATCGAGTGTTCCTACAATTTTTGAGGATAAGCTTGCAATTGGATCGGAGTTTTTAGGAGAATATGAATGGGGAGAAGCAAAGAACTTGACGAAGAAGGTGGATACTGTGCATAGGGTTCTAGTGCAGCTATTGAGGAAGGTTAGAGTGAATTTGGTGGCCACACAAGCTTCATACGATGTGCCATTCTCTTACACACAGAACGATACTCTCATCAATGGCCAAAACATTACACTGAACATGGAAGATGACATTTACAATGGAGTCAATATTTACAACTTTAAGTTTGATCAAGAATCGTTGCAGTTGTGTGAATGTCGGAAAATGGCAGTTTCATTCAATGTGTATTGTGTTTTATTTTGTCTTTAA

Protein sequence

MKLDVETSIIKSSVPTIFEDKLAIGSEFLGEYEWGEAKNLTKKVDTVHRVLVQLLRKVRVNLVATQASYDVPFSYTQNDTLINGQNITLNMEDDIYNGVNIYNFKFDQESLQLCECRKMAVSFNVYCVLFCL
Homology
BLAST of CcUC03G046820 vs. NCBI nr
Match: XP_004140685.1 (uncharacterized protein LOC101213433 [Cucumis sativus] >KGN46323.1 hypothetical protein Csa_005199 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 9.8e-38
Identity = 85/109 (77.98%), Postives = 94/109 (86.24%), Query Frame = 0

Query: 2   KLDVETSIIKSSVPTIFEDKLAIGSE-FLGEYEWGEAKNLTKKVDTVHRVLVQLLRKVRV 61
           KLDVETS+IKSSVP IFE+ LAIG E F GEY+WGE  NLTKKVDTVH+VLVQ    VRV
Sbjct: 363 KLDVETSVIKSSVPIIFEETLAIGPELFSGEYDWGEDTNLTKKVDTVHKVLVQPCSNVRV 422

Query: 62  NLVATQASYDVPFSYTQNDTLINGQNITLNMEDDIYNGVNIYNFKFDQE 110
           NLVATQASYDVPFSYTQNDTLI+G+ I+LNMED IY GVN+YNFKF+ E
Sbjct: 423 NLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFETE 471

BLAST of CcUC03G046820 vs. NCBI nr
Match: KAA0039927.1 (uncharacterized protein E6C27_scaffold122G002070 [Cucumis melo var. makuwa] >TYK24574.1 uncharacterized protein E5676_scaffold266G001190 [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 1.5e-33
Identity = 82/118 (69.49%), Postives = 94/118 (79.66%), Query Frame = 0

Query: 1   MKLDVETSIIKSSVPTIFEDKLAIGSE-FLGEYEWGEAKNLTKKVDTVHRVLVQLLRKVR 60
           +KL+VET +I+SS+P IFE+ LAIG E F GEY+WGE KNLTKKV+TVH+VLVQ   KVR
Sbjct: 363 VKLNVETCVIESSIPIIFEETLAIGPESFSGEYDWGEDKNLTKKVETVHKVLVQPCSKVR 422

Query: 61  VNLVATQASYDVPFSYTQNDTLINGQNI-TLNMEDDIYNGVNIYNFKFDQESLQLCEC 117
           VNLVATQASYDVPFSYTQNDTLI+   I T  MED IY GVNIYNFKF++     C C
Sbjct: 423 VNLVATQASYDVPFSYTQNDTLISSNLITTYKMEDGIYKGVNIYNFKFEETD---CGC 477

BLAST of CcUC03G046820 vs. NCBI nr
Match: XP_008460024.1 (PREDICTED: uncharacterized protein LOC103498962 [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 2.5e-33
Identity = 81/118 (68.64%), Postives = 94/118 (79.66%), Query Frame = 0

Query: 1   MKLDVETSIIKSSVPTIFEDKLAIGSE-FLGEYEWGEAKNLTKKVDTVHRVLVQLLRKVR 60
           +KL+VET +I+SS+P IFE+ LAIG E F GEY+WGE KNLTKKV+TVH+VLVQ   KVR
Sbjct: 363 VKLNVETCVIESSIPIIFEETLAIGPESFSGEYDWGEDKNLTKKVETVHKVLVQPCSKVR 422

Query: 61  VNLVATQASYDVPFSYTQNDTLINGQNI-TLNMEDDIYNGVNIYNFKFDQESLQLCEC 117
           VNLVATQASYDVPFSYTQNDTLI+   I T  MED IY GVN+YNFKF++     C C
Sbjct: 423 VNLVATQASYDVPFSYTQNDTLISSNLITTYKMEDGIYKGVNLYNFKFEETD---CGC 477

BLAST of CcUC03G046820 vs. NCBI nr
Match: KAA8521726.1 (hypothetical protein F0562_012399 [Nyssa sinensis])

HSP 1 Score: 115.5 bits (288), Expect = 3.4e-22
Identity = 55/113 (48.67%), Postives = 81/113 (71.68%), Query Frame = 0

Query: 1   MKLDVETSIIKSSVPTIFEDKLAIGSEFLGEYEWGEAKNLTKKVDTVHRVLVQLLRKVRV 60
           +KL + TS I++ VP I E K+ IG+EF GEY+WG+    + +V+TV+ V V  +  V+V
Sbjct: 315 LKLGINTS-IQTGVPLIAEGKVEIGAEFTGEYQWGQTDESSTEVETVYTVTVPPMSMVKV 374

Query: 61  NLVATQASYDVPFSYTQNDTLINGQNITLNMEDDIYNGVNIYNFKFDQESLQL 114
           +L+AT+ S DVPFSY+Q DTLINGQ IT  M+D +Y G+N +NFK++ + + L
Sbjct: 375 SLLATKGSCDVPFSYSQRDTLINGQQITSTMDDGVYTGINCFNFKYETQQVNL 426

BLAST of CcUC03G046820 vs. NCBI nr
Match: XP_022953936.1 (uncharacterized protein LOC111456344 [Cucurbita moschata])

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-21
Identity = 55/110 (50.00%), Postives = 80/110 (72.73%), Query Frame = 0

Query: 1   MKLDVETSIIKSSVPTIFEDKLAIGSEFLGEYEWGEAKNLTKKVDTVHRVLVQLLRKVRV 60
           MKL V+T+ I++ +P IFE K+ I +EF G+Y+WGE K  +K V+T ++V V  +  V V
Sbjct: 354 MKLGVKTT-IETGIPFIFEGKVEISAEFSGQYQWGETKTTSKAVETSYQVTVPPMTTVIV 413

Query: 61  NLVATQASYDVPFSYTQNDTLINGQNITLNMEDDIYNGVNIYNFKFDQES 111
           +L+AT+ + DVP+SYTQ DTLING+  T  M+D +Y GVN YNFK++ +S
Sbjct: 414 SLLATKGTSDVPYSYTQRDTLINGETKTYQMDDGVYKGVNSYNFKYETKS 462

BLAST of CcUC03G046820 vs. ExPASy TrEMBL
Match: A0A0A0KA14 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G084570 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.7e-38
Identity = 85/109 (77.98%), Postives = 94/109 (86.24%), Query Frame = 0

Query: 2   KLDVETSIIKSSVPTIFEDKLAIGSE-FLGEYEWGEAKNLTKKVDTVHRVLVQLLRKVRV 61
           KLDVETS+IKSSVP IFE+ LAIG E F GEY+WGE  NLTKKVDTVH+VLVQ    VRV
Sbjct: 363 KLDVETSVIKSSVPIIFEETLAIGPELFSGEYDWGEDTNLTKKVDTVHKVLVQPCSNVRV 422

Query: 62  NLVATQASYDVPFSYTQNDTLINGQNITLNMEDDIYNGVNIYNFKFDQE 110
           NLVATQASYDVPFSYTQNDTLI+G+ I+LNMED IY GVN+YNFKF+ E
Sbjct: 423 NLVATQASYDVPFSYTQNDTLISGEKISLNMEDGIYKGVNLYNFKFETE 471

BLAST of CcUC03G046820 vs. ExPASy TrEMBL
Match: A0A5D3DLV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001190 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 7.1e-34
Identity = 82/118 (69.49%), Postives = 94/118 (79.66%), Query Frame = 0

Query: 1   MKLDVETSIIKSSVPTIFEDKLAIGSE-FLGEYEWGEAKNLTKKVDTVHRVLVQLLRKVR 60
           +KL+VET +I+SS+P IFE+ LAIG E F GEY+WGE KNLTKKV+TVH+VLVQ   KVR
Sbjct: 363 VKLNVETCVIESSIPIIFEETLAIGPESFSGEYDWGEDKNLTKKVETVHKVLVQPCSKVR 422

Query: 61  VNLVATQASYDVPFSYTQNDTLINGQNI-TLNMEDDIYNGVNIYNFKFDQESLQLCEC 117
           VNLVATQASYDVPFSYTQNDTLI+   I T  MED IY GVNIYNFKF++     C C
Sbjct: 423 VNLVATQASYDVPFSYTQNDTLISSNLITTYKMEDGIYKGVNIYNFKFEETD---CGC 477

BLAST of CcUC03G046820 vs. ExPASy TrEMBL
Match: A0A1S3CB39 (uncharacterized protein LOC103498962 OS=Cucumis melo OX=3656 GN=LOC103498962 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.2e-33
Identity = 81/118 (68.64%), Postives = 94/118 (79.66%), Query Frame = 0

Query: 1   MKLDVETSIIKSSVPTIFEDKLAIGSE-FLGEYEWGEAKNLTKKVDTVHRVLVQLLRKVR 60
           +KL+VET +I+SS+P IFE+ LAIG E F GEY+WGE KNLTKKV+TVH+VLVQ   KVR
Sbjct: 363 VKLNVETCVIESSIPIIFEETLAIGPESFSGEYDWGEDKNLTKKVETVHKVLVQPCSKVR 422

Query: 61  VNLVATQASYDVPFSYTQNDTLINGQNI-TLNMEDDIYNGVNIYNFKFDQESLQLCEC 117
           VNLVATQASYDVPFSYTQNDTLI+   I T  MED IY GVN+YNFKF++     C C
Sbjct: 423 VNLVATQASYDVPFSYTQNDTLISSNLITTYKMEDGIYKGVNLYNFKFEETD---CGC 477

BLAST of CcUC03G046820 vs. ExPASy TrEMBL
Match: A0A5J4ZVE8 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_012399 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 55/113 (48.67%), Postives = 81/113 (71.68%), Query Frame = 0

Query: 1   MKLDVETSIIKSSVPTIFEDKLAIGSEFLGEYEWGEAKNLTKKVDTVHRVLVQLLRKVRV 60
           +KL + TS I++ VP I E K+ IG+EF GEY+WG+    + +V+TV+ V V  +  V+V
Sbjct: 315 LKLGINTS-IQTGVPLIAEGKVEIGAEFTGEYQWGQTDESSTEVETVYTVTVPPMSMVKV 374

Query: 61  NLVATQASYDVPFSYTQNDTLINGQNITLNMEDDIYNGVNIYNFKFDQESLQL 114
           +L+AT+ S DVPFSY+Q DTLINGQ IT  M+D +Y G+N +NFK++ + + L
Sbjct: 375 SLLATKGSCDVPFSYSQRDTLINGQQITSTMDDGVYTGINCFNFKYETQQVNL 426

BLAST of CcUC03G046820 vs. ExPASy TrEMBL
Match: A0A6J1GPH4 (uncharacterized protein LOC111456344 OS=Cucurbita moschata OX=3662 GN=LOC111456344 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.1e-22
Identity = 55/110 (50.00%), Postives = 80/110 (72.73%), Query Frame = 0

Query: 1   MKLDVETSIIKSSVPTIFEDKLAIGSEFLGEYEWGEAKNLTKKVDTVHRVLVQLLRKVRV 60
           MKL V+T+ I++ +P IFE K+ I +EF G+Y+WGE K  +K V+T ++V V  +  V V
Sbjct: 354 MKLGVKTT-IETGIPFIFEGKVEISAEFSGQYQWGETKTTSKAVETSYQVTVPPMTTVIV 413

Query: 61  NLVATQASYDVPFSYTQNDTLINGQNITLNMEDDIYNGVNIYNFKFDQES 111
           +L+AT+ + DVP+SYTQ DTLING+  T  M+D +Y GVN YNFK++ +S
Sbjct: 414 SLLATKGTSDVPYSYTQRDTLINGETKTYQMDDGVYKGVNSYNFKYETKS 462

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004140685.19.8e-3877.98uncharacterized protein LOC101213433 [Cucumis sativus] >KGN46323.1 hypothetical ... [more]
KAA0039927.11.5e-3369.49uncharacterized protein E6C27_scaffold122G002070 [Cucumis melo var. makuwa] >TYK... [more]
XP_008460024.12.5e-3368.64PREDICTED: uncharacterized protein LOC103498962 [Cucumis melo][more]
KAA8521726.13.4e-2248.67hypothetical protein F0562_012399 [Nyssa sinensis][more]
XP_022953936.11.7e-2150.00uncharacterized protein LOC111456344 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KA144.7e-3877.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G084570 PE=4 SV=1[more]
A0A5D3DLV27.1e-3469.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CB391.2e-3368.64uncharacterized protein LOC103498962 OS=Cucumis melo OX=3656 GN=LOC103498962 PE=... [more]
A0A5J4ZVE81.6e-2248.67Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_012399 PE=3 SV=1[more]
A0A6J1GPH48.1e-2250.00uncharacterized protein LOC111456344 OS=Cucurbita moschata OX=3662 GN=LOC1114563... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.170.15.10Proaerolysin, chain A, domain 3coord: 1..111
e-value: 3.3E-18
score: 67.8
NoneNo IPR availablePANTHERPTHR39244NATTERIN-4coord: 2..112
NoneNo IPR availableCDDcd20216PFM_HFR-2-likecoord: 1..109
e-value: 1.60784E-44
score: 140.801
NoneNo IPR availableSUPERFAMILY56973Aerolisin/ETX pore-forming domaincoord: 14..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC03G046820.1CcUC03G046820.1mRNA