CcUC03G046120 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC03G046120
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptionthylakoid lumenal 17.9 kDa protein, chloroplastic
LocationCicolChr03: 4109668 .. 4112095 (-)
RNA-Seq ExpressionCcUC03G046120
SyntenyCcUC03G046120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGAAGAAGAAGAACCAGTACCACTCCCCAGCCTCTCTTCCTTCCATGGCCGCTCTTCAAAATTCAAACCACAAACCCATTTTCCTTTCTCATCTTCTTTCATTTGCCCTTTCTGTAACCCTAAGCTCACCATTTCCTTCTCTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACTACTCCATTTTCTCAATCCAAGAACTTACCAACTGGACTAGAAAACGGGTATGCTCTGAATCTTGTAATTTCAACTGTTTCTGTTCAATTTTGTTACTAGTTCATGGTTTCTGTGTGCCCCAAATTTGCATTGGTTTTCTGAATTGATTCATTGACATTGTAGCTAACTGCCTCTTTGGGGGTTTCCCTCAATGTTGTTCACCTTAATGTTGCAGGAAAATTATGCCCTGCCCATCAACCAATCCGTCTTGTGTTTCCACAAATCCTAAATCATCTTCTTTTGCATTCCCTTTAAACATTCCTGAGAATTTCAGTGGGAATCCAATTCAGGTTTTAGTTCTCTGAAAGCCGAGCATGATTTGCTTGTATATTCTTCTACAAAATTGGTTTCTCTTGGTGGTGTTGCTTTTTCATGTTCCTGCTCTACGTTTATTTGCAGAAGCTGCAGGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAGGATACCCCTTATGGTAATTGAATTGAACTTATCAATTGAAGATTTAGACTTTGCATTTCTGATTTATATACATATTTTAATTAGACTGCTGAGGTGAGATGAGAATGGATTCTATTTACCATAGTGACTGTCGGCTTATTCTTTTGAATTCAATAGTGCTTTAACATAGATAAAGTAGTAAATCCTTGGTTGAGTTATAACTTCTAAGTTTGATTTTTGAATTCTCAAAAATAGGTAATAGTTCCTTAAAGTTTCATTGTTATATCTATAGGTTCTTTTAACTTTATAAAGGATCTATGTGGCCCAAAATTACATGGCTGCACATGGCTTGGTTATGACTCTATAAAATATTTAACCTACAAATTTTGGGGAAAATTGATACTCCTGTGGTTTGAATTTTTATATATTGATCAACCCTAAAGTAGTAGAATGACATCTTCATGCTCTAGTCATAGCCAACTAAATCTTTTTATATCTCTTAATATTTCAAATATCGTTAATCGAATTAACTTTGTATGTTTTTAGTGAAGTGACCATGTAAGAATTCGTCGTCCGATTTCATCTTCTTGTTCCTGTATTTTGCTTTGATGTTGAATTTACATCATTTATCTATCAAGATGCATATATTTTTTAGGGAAAATATTAAGTTATACCCATAAACTATAGAAGCTATTAGTTTAAATCTTGAACTAATACTTGTACTAATTTAAACCCTCAACTTTTGTAAATGTATCAATTTACACCTTCCATTATGTGTCGTTTGAAAAAAACCTTGTGTTGTAACTGTATCAACTACACTCCCAAACTTTTATAAATATATCAATTTAGACTCGTAGACAAAATTTCTTTTGAAAATAGTCCATGCATTTACTCTAATTGTCCATTATATAAAACAACGTTTGAAGAAATCTACACACGTTTGAAAAATAATGTACAAATGATTTTCAAATTAGGTAATCGTCAATCAGGGTCTTAAATTTATTGGTTTATGAAAATTTAAAAGTTGAGTTGACTTACATTAAAATTTCACTCAATATTGGTCAAATGAAACTTAGAGGAGGGTGTATATCGATACATTTATGAAAGTTCAAGGTTAAAATTGATACAATTATTAGTTTAGGGTTTTAATTGATACAACCTTCAAACTTTAGGGGTATAAATTGATATTTACCCTATATTTTATATTGAAAAAAAGTGTGTCCCAAATGTGTTTGTGGTCTAATATTTAAGAAATTGATGGGTCACCATGTTCGTGTTTGTGCTTCTTAGTTCGTGGATTTATGCGATTCAAAATCAAAAGTTTGAGGAATTATTTTGTTAAACACTTGTTAAGTTCCAGAACCAATGAAATAGAACTTAGAAAGTGTAGAGACCTATATCGATACTTTTTAGGCGTTAAAATCTTGAGCCTTTTACGTAAAAGAGAGTATGGTTATGGCTTATTGAACAAGATGCATTTATGATTATGACAGGTCAATATTTAGAAGCTGAGGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAAAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAGGTGACTTATGTGTATCCCTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGGATTGGTATTCTCCAACCTTCGAATCCATGGATGACTAG

mRNA sequence

ATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGAAGAAGAAGAACCAGTACCACTCCCCAGCCTCTCTTCCTTCCATGGCCGCTCTTCAAAATTCAAACCACAAACCCATTTTCCTTTCTCATCTTCTTTCATTTGCCCTTTCTGTAACCCTAAGCTCACCATTTCCTTCTCTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACTACTCCATTTTCTCAATCCAAGAACTTACCAACTGGACTAGAAAACGGGAAAATTATGCCCTGCCCATCAACCAATCCGTCTTGTGTTTCCACAAATCCTAAATCATCTTCTTTTGCATTCCCTTTAAACATTCCTGAGAATTTCAGTGGGAATCCAATTCAGAAGCTGCAGGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAGGATACCCCTTATGGTCAATATTTAGAAGCTGAGGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAAAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAGGTGACTTATGTGTATCCCTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGGATTGGTATTCTCCAACCTTCGAATCCATGGATGACTAG

Coding sequence (CDS)

ATGAGTTCGCTCCAATTTCGCCCTCCACTGGTTTCGCCATGGAAGAAGAAGAAGAAGAAGAACCAGTACCACTCCCCAGCCTCTCTTCCTTCCATGGCCGCTCTTCAAAATTCAAACCACAAACCCATTTTCCTTTCTCATCTTCTTTCATTTGCCCTTTCTGTAACCCTAAGCTCACCATTTCCTTCTCTCGCAATCCCTTCTCTTAACTCCCTCTCCTCTCCACTTTCTCCCACTACTCCATTTTCTCAATCCAAGAACTTACCAACTGGACTAGAAAACGGGAAAATTATGCCCTGCCCATCAACCAATCCGTCTTGTGTTTCCACAAATCCTAAATCATCTTCTTTTGCATTCCCTTTAAACATTCCTGAGAATTTCAGTGGGAATCCAATTCAGAAGCTGCAGGAAGCAATCCTTGAAACACAGAGGAATCCAAAAATTCAGGTGGTGGAGGATACCCCTTATGGTCAATATTTAGAAGCTGAGGTAGATGGGAACTTTGGGCGAGATGTGATTGAGTTTTTGGTGAAAGGAGATGTGGCTGCATATAGAATCATGGCTACAAAGGTGACTTATGTGTATCCCTTCACAACTGCTTTAGGGGACTCCAAAGGACAGGAAGAACGAATGAGGAAGATCATAGACCAGTTGGATTGGTATTCTCCAACCTTCGAATCCATGGATGACTAG

Protein sequence

MSSLQFRPPLVSPWKKKKKKNQYHSPASLPSMAALQNSNHKPIFLSHLLSFALSVTLSSPFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFESMDD
Homology
BLAST of CcUC03G046120 vs. NCBI nr
Match: XP_038893869.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 448.0 bits (1151), Expect = 5.0e-122
Identity = 224/230 (97.39%), Postives = 228/230 (99.13%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKKKKNQYHSPASLPSMAALQNSNHKPIFLSHLLSFALSVTLSSP 60
           MSSLQFRPPLVSPWKKKKKKNQYHSP S PSMAALQNSNHKPIFLSH+LSFALS+TLSSP
Sbjct: 1   MSSLQFRPPLVSPWKKKKKKNQYHSPNSFPSMAALQNSNHKPIFLSHILSFALSITLSSP 60

Query: 61  FPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAFP 120
           FPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAFP
Sbjct: 61  FPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFAFP 120

Query: 121 LNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVKGD 180
           LNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVKGD
Sbjct: 121 LNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVKGD 180

Query: 181 VAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFESMDD 231
           VAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL+WYSPTF+SMDD
Sbjct: 181 VAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLNWYSPTFDSMDD 230

BLAST of CcUC03G046120 vs. NCBI nr
Match: XP_004154123.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 hypothetical protein Csa_013578 [Cucumis sativus])

HSP 1 Score: 431.4 bits (1108), Expect = 4.9e-117
Identity = 216/232 (93.10%), Postives = 224/232 (96.55%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKK--KKKNQYHSPASLPSMAALQNSNHKPIFLSHLLSFALSVTLS 60
           MSSLQFRPPLVSPWKKK    KNQYHSP S+PSM+ LQN+NHKPIFLSHLLSFALS+TLS
Sbjct: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60

Query: 61  SPFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFA 120
           SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSFA
Sbjct: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120

Query: 121 FPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVK 180
           FPLNIP+NFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV+
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180

Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFESMDD 231
           GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL WYSPTF+SMDD
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232

BLAST of CcUC03G046120 vs. NCBI nr
Match: XP_008439847.1 (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA0055338.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa] >TYJ99264.1 thylakoid lumenal 17.9 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 427.9 bits (1099), Expect = 5.4e-116
Identity = 216/233 (92.70%), Postives = 224/233 (96.14%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKK---KKKNQYHSPASLPSMAALQNSNHKPIFLSHLLSFALSVTL 60
           MSSLQFRP LVSPWKKK     KNQYHSP S+PSM+ALQN NHKPIFLSHLLSFALS+TL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  SSPFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
           +SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIP+NFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFESMDD 231
           KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL WYSPTF+SMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

BLAST of CcUC03G046120 vs. NCBI nr
Match: XP_022137359.1 (thylakoid lumenal 17.9 kDa protein, chloroplastic-like isoform X3 [Momordica charantia])

HSP 1 Score: 392.5 bits (1007), Expect = 2.5e-105
Identity = 204/233 (87.55%), Postives = 212/233 (90.99%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKKKKNQYHSP----ASLPSMAALQNSNHKPIFLSHLLSFALSVT 60
           MSSL+F PPLVSPWKKKKKKN  HSP     SLPSMAALQNS+ KPI LSHLLSFALSVT
Sbjct: 1   MSSLRFPPPLVSPWKKKKKKNN-HSPGSNQTSLPSMAALQNSDQKPILLSHLLSFALSVT 60

Query: 61  LSSPFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSS 120
           LSSPFPSLAIPSLNSLSSPLSPTTPFSQSKNL  GLENGKI PCPSTNP+CVSTNPKSSS
Sbjct: 61  LSSPFPSLAIPSLNSLSSPLSPTTPFSQSKNLQIGLENGKIRPCPSTNPACVSTNPKSSS 120

Query: 121 FAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFL 180
           FAFPL+IPENF+ NPIQKLQE IL+TQRN KIQVVEDTPYGQYLEAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPENFTENPIQKLQEVILKTQRNAKIQVVEDTPYGQYLEAEVDGNFGRDVIEFL 180

Query: 181 VKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFESMD 230
           VKGDV AYR MATKVTYVYPFTTA GDSKGQEERM+KIID L WYSPTF+SMD
Sbjct: 181 VKGDVVAYRTMATKVTYVYPFTTAFGDSKGQEERMKKIIDNLGWYSPTFDSMD 232

BLAST of CcUC03G046120 vs. NCBI nr
Match: KAG7012320.1 (Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 390.6 bits (1002), Expect = 9.5e-105
Identity = 198/234 (84.62%), Postives = 213/234 (91.03%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKKKKNQYHSP----ASLPSMAALQNSNHKPIFLSHLLSFALSVT 60
           MSSL FRP LVSPWKKKK  NQ+ S      S PSMAAL N NHKPIF+SHLLSFALS+T
Sbjct: 1   MSSLHFRPALVSPWKKKKNNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LSSPFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSS 120
           L+SPFPSLAIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPSTNPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120

Query: 121 FAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFL 180
           FAFPL+IPE+++GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPESYTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFESMDD 231
           V+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++LDWYSPTFESM D
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

BLAST of CcUC03G046120 vs. ExPASy Swiss-Prot
Match: Q9SW33 (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g24930 PE=1 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.2e-65
Identity = 133/195 (68.21%), Postives = 161/195 (82.56%), Query Frame = 0

Query: 37  NSNHKPI-FLSHLLSFALSVTLSSPFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENG 96
           +S   PI  L  L+SFAL+++L+S  P+LAIPSL+S S PL  TTPF+QSK + TGL NG
Sbjct: 34  SSTSPPISLLPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNG 93

Query: 97  KIMPCPSTNPSCVSTNPKSSSFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTP 156
           KI PCPSTNP CVSTNP SSSF+FPL IPE  + +PI+KL+EAI+ TQ+NPK  V+EDTP
Sbjct: 94  KIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTP 153

Query: 157 YGQYLEAEVD-GNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKI 216
           YG+Y+EAEV+ G F RDV+EFLVK DV AYR MATKVT+VYPFTTA GDSKGQEER++K+
Sbjct: 154 YGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKL 213

Query: 217 IDQLDWYSPTFESMD 230
           IDQL WY+PTFESM+
Sbjct: 214 IDQLGWYAPTFESME 225

BLAST of CcUC03G046120 vs. ExPASy TrEMBL
Match: A0A0A0LRK9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.4e-117
Identity = 216/232 (93.10%), Postives = 224/232 (96.55%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKK--KKKNQYHSPASLPSMAALQNSNHKPIFLSHLLSFALSVTLS 60
           MSSLQFRPPLVSPWKKK    KNQYHSP S+PSM+ LQN+NHKPIFLSHLLSFALS+TLS
Sbjct: 1   MSSLQFRPPLVSPWKKKDNNNKNQYHSPVSVPSMSTLQNANHKPIFLSHLLSFALSITLS 60

Query: 61  SPFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSFA 120
           SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPS NPSCVSTNPKSSSFA
Sbjct: 61  SPFPSIAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSANPSCVSTNPKSSSFA 120

Query: 121 FPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVK 180
           FPLNIP+NFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV+
Sbjct: 121 FPLNIPDNFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLVR 180

Query: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFESMDD 231
           GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL WYSPTF+SMDD
Sbjct: 181 GDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 232

BLAST of CcUC03G046120 vs. ExPASy TrEMBL
Match: A0A5A7UK02 (Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004760 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 2.6e-116
Identity = 216/233 (92.70%), Postives = 224/233 (96.14%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKK---KKKNQYHSPASLPSMAALQNSNHKPIFLSHLLSFALSVTL 60
           MSSLQFRP LVSPWKKK     KNQYHSP S+PSM+ALQN NHKPIFLSHLLSFALS+TL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  SSPFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
           +SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIP+NFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFESMDD 231
           KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL WYSPTF+SMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

BLAST of CcUC03G046120 vs. ExPASy TrEMBL
Match: A0A1S3AZP3 (thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484512 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 2.6e-116
Identity = 216/233 (92.70%), Postives = 224/233 (96.14%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKK---KKKNQYHSPASLPSMAALQNSNHKPIFLSHLLSFALSVTL 60
           MSSLQFRP LVSPWKKK     KNQYHSP S+PSM+ALQN NHKPIFLSHLLSFALS+TL
Sbjct: 1   MSSLQFRPLLVSPWKKKDNNNNKNQYHSPVSVPSMSALQNVNHKPIFLSHLLSFALSITL 60

Query: 61  SSPFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120
           +SPFPS+AIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF
Sbjct: 61  TSPFPSVAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSSF 120

Query: 121 AFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFLV 180
           AFPLNIP+NFSGNPIQKLQEAILETQRNPKIQ+VEDTPYGQYLEAEVDGNFGRDVIEFLV
Sbjct: 121 AFPLNIPDNFSGNPIQKLQEAILETQRNPKIQMVEDTPYGQYLEAEVDGNFGRDVIEFLV 180

Query: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFESMDD 231
           KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQL WYSPTF+SMDD
Sbjct: 181 KGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLHWYSPTFDSMDD 233

BLAST of CcUC03G046120 vs. ExPASy TrEMBL
Match: A0A6J1C708 (thylakoid lumenal 17.9 kDa protein, chloroplastic-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111008832 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.2e-105
Identity = 204/233 (87.55%), Postives = 212/233 (90.99%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKKKKNQYHSP----ASLPSMAALQNSNHKPIFLSHLLSFALSVT 60
           MSSL+F PPLVSPWKKKKKKN  HSP     SLPSMAALQNS+ KPI LSHLLSFALSVT
Sbjct: 1   MSSLRFPPPLVSPWKKKKKKNN-HSPGSNQTSLPSMAALQNSDQKPILLSHLLSFALSVT 60

Query: 61  LSSPFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSS 120
           LSSPFPSLAIPSLNSLSSPLSPTTPFSQSKNL  GLENGKI PCPSTNP+CVSTNPKSSS
Sbjct: 61  LSSPFPSLAIPSLNSLSSPLSPTTPFSQSKNLQIGLENGKIRPCPSTNPACVSTNPKSSS 120

Query: 121 FAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFL 180
           FAFPL+IPENF+ NPIQKLQE IL+TQRN KIQVVEDTPYGQYLEAEVDGNFGRDVIEFL
Sbjct: 121 FAFPLSIPENFTENPIQKLQEVILKTQRNAKIQVVEDTPYGQYLEAEVDGNFGRDVIEFL 180

Query: 181 VKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFESMD 230
           VKGDV AYR MATKVTYVYPFTTA GDSKGQEERM+KIID L WYSPTF+SMD
Sbjct: 181 VKGDVVAYRTMATKVTYVYPFTTAFGDSKGQEERMKKIIDNLGWYSPTFDSMD 232

BLAST of CcUC03G046120 vs. ExPASy TrEMBL
Match: A0A6J1GT70 (thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457250 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 4.6e-105
Identity = 199/234 (85.04%), Postives = 213/234 (91.03%), Query Frame = 0

Query: 1   MSSLQFRPPLVSPWKKKKKKNQYHSP----ASLPSMAALQNSNHKPIFLSHLLSFALSVT 60
           MSSL FRP LVSPWKKKKK NQ+ S      S PSMAAL N NHKPIF+SHLLSFALS+T
Sbjct: 1   MSSLHFRPALVSPWKKKKKNNQFLSAVLNRTSPPSMAALPNPNHKPIFISHLLSFALSIT 60

Query: 61  LSSPFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENGKIMPCPSTNPSCVSTNPKSSS 120
           L+SPFPSLAIPS NSLSSPLSPTTPFSQSK+LP GLENGKI PCPSTNPSCVSTNPKSSS
Sbjct: 61  LTSPFPSLAIPSFNSLSSPLSPTTPFSQSKDLPIGLENGKIRPCPSTNPSCVSTNPKSSS 120

Query: 121 FAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTPYGQYLEAEVDGNFGRDVIEFL 180
           FAF L+IPE+F+GNPIQKLQE ILETQRN KIQ+VEDTPYGQY+EAEVDGNFGRDVIEFL
Sbjct: 121 FAFSLSIPESFTGNPIQKLQEVILETQRNAKIQMVEDTPYGQYMEAEVDGNFGRDVIEFL 180

Query: 181 VKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKIIDQLDWYSPTFESMDD 231
           V+GDVAAYRIMA KVTYVYPFTTALGDSKGQEERM+KII++LDWYSPTFESM D
Sbjct: 181 VRGDVAAYRIMAAKVTYVYPFTTALGDSKGQEERMKKIIEELDWYSPTFESMVD 234

BLAST of CcUC03G046120 vs. TAIR 10
Match: AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast )

HSP 1 Score: 251.1 bits (640), Expect = 8.4e-67
Identity = 133/195 (68.21%), Postives = 161/195 (82.56%), Query Frame = 0

Query: 37  NSNHKPI-FLSHLLSFALSVTLSSPFPSLAIPSLNSLSSPLSPTTPFSQSKNLPTGLENG 96
           +S   PI  L  L+SFAL+++L+S  P+LAIPSL+S S PL  TTPF+QSK + TGL NG
Sbjct: 34  SSTSPPISLLPKLISFALAISLTSFSPALAIPSLSS-SQPL--TTPFTQSKFVQTGLLNG 93

Query: 97  KIMPCPSTNPSCVSTNPKSSSFAFPLNIPENFSGNPIQKLQEAILETQRNPKIQVVEDTP 156
           KI PCPSTNP CVSTNP SSSF+FPL IPE  + +PI+KL+EAI+ TQ+NPK  V+EDTP
Sbjct: 94  KIRPCPSTNPGCVSTNPTSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTP 153

Query: 157 YGQYLEAEVD-GNFGRDVIEFLVKGDVAAYRIMATKVTYVYPFTTALGDSKGQEERMRKI 216
           YG+Y+EAEV+ G F RDV+EFLVK DV AYR MATKVT+VYPFTTA GDSKGQEER++K+
Sbjct: 154 YGRYVEAEVEGGGFSRDVMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKL 213

Query: 217 IDQLDWYSPTFESMD 230
           IDQL WY+PTFESM+
Sbjct: 214 IDQLGWYAPTFESME 225

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038893869.15.0e-12297.39thylakoid lumenal 17.9 kDa protein, chloroplastic [Benincasa hispida][more]
XP_004154123.14.9e-11793.10thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis sativus] >KGN64418.1 ... [more]
XP_008439847.15.4e-11692.70PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Cucumis melo] >KAA... [more]
XP_022137359.12.5e-10587.55thylakoid lumenal 17.9 kDa protein, chloroplastic-like isoform X3 [Momordica cha... [more]
KAG7012320.19.5e-10584.62Thylakoid lumenal 17.9 kDa protein, chloroplastic, partial [Cucurbita argyrosper... [more]
Match NameE-valueIdentityDescription
Q9SW331.2e-6568.21Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370... [more]
Match NameE-valueIdentityDescription
A0A0A0LRK92.4e-11793.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050570 PE=4 SV=1[more]
A0A5A7UK022.6e-11692.70Thylakoid lumenal 17.9 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3AZP32.6e-11692.70thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A6J1C7081.2e-10587.55thylakoid lumenal 17.9 kDa protein, chloroplastic-like isoform X3 OS=Momordica c... [more]
A0A6J1GT704.6e-10585.04thylakoid lumenal 17.9 kDa protein, chloroplastic isoform X2 OS=Cucurbita moscha... [more]
Match NameE-valueIdentityDescription
AT4G24930.18.4e-6768.21thylakoid lumenal 17.9 kDa protein, chloroplast [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
IPR037734Thylakoid lumenal 17.9kDa proteinPANTHERPTHR36783THYLAKOID LUMENAL 17.9 KDA PROTEIN, CHLOROPLASTICcoord: 15..229

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC03G046120.1CcUC03G046120.1mRNA