CcUC03G044380 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC03G044380
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr03: 2226711 .. 2226929 (+)
RNA-Seq ExpressionCcUC03G044380
SyntenyCcUC03G044380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCGAACAAGGAACAGAGGAAGCAGCTGTCGGATCTGCCTCCGAGACGAGGTTTGATCAAGATCAAGATCTTCCGTAGCATCTTCAGGACTGTGAAATCGATACCGGAAGGATTCGCAAGAGGCCGGAGAGAAGACGAAACCCTAACTTCGACTTCGACCACGCCGGCTCCGGGTACTAGCGGCTACAGCTCGGAAGCTCAGTCCGAGTCATGA

mRNA sequence

ATGAATTCGAACAAGGAACAGAGGAAGCAGCTGTCGGATCTGCCTCCGAGACGAGGTTTGATCAAGATCAAGATCTTCCGTAGCATCTTCAGGACTGTGAAATCGATACCGGAAGGATTCGCAAGAGGCCGGAGAGAAGACGAAACCCTAACTTCGACTTCGACCACGCCGGCTCCGGGTACTAGCGGCTACAGCTCGGAAGCTCAGTCCGAGTCATGA

Coding sequence (CDS)

ATGAATTCGAACAAGGAACAGAGGAAGCAGCTGTCGGATCTGCCTCCGAGACGAGGTTTGATCAAGATCAAGATCTTCCGTAGCATCTTCAGGACTGTGAAATCGATACCGGAAGGATTCGCAAGAGGCCGGAGAGAAGACGAAACCCTAACTTCGACTTCGACCACGCCGGCTCCGGGTACTAGCGGCTACAGCTCGGAAGCTCAGTCCGAGTCATGA

Protein sequence

MNSNKEQRKQLSDLPPRRGLIKIKIFRSIFRTVKSIPEGFARGRREDETLTSTSTTPAPGTSGYSSEAQSES
Homology
BLAST of CcUC03G044380 vs. NCBI nr
Match: TYK08469.1 (hypothetical protein E5676_scaffold74032G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 5.2e-25
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 0

Query: 1  MNSNKEQRKQLSDLPPRRGLIKIKIFRSIFRTVKSIPEGFARGRREDETLTSTSTTPAPG 60
          MNSNKE RK++ + PPRRGLIKIKIFRSIFRTVKSIPEGFAR RREDETLTSTSTTPAPG
Sbjct: 1  MNSNKEPRKRMPEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETLTSTSTTPAPG 60

Query: 61 TSGYSSEAQSES 73
          TSGY+SEAQSES
Sbjct: 61 TSGYNSEAQSES 72

BLAST of CcUC03G044380 vs. NCBI nr
Match: KAE8652730.1 (hypothetical protein Csa_013247 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 60/82 (73.17%), Postives = 65/82 (79.27%), Query Frame = 0

Query: 1  MNSNKEQRKQLSDLPPRRGLIKIKIFRSIFRTVKSIPEGFARGRREDE----------TL 60
          MNS K+ RK+ ++ PPRRGLIKIKIFRSIFRTVKSIPEGFAR RREDE          T 
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTS 60

Query: 61 TSTSTTPAPGTSGYSSEAQSES 73
          TSTSTTPAPGTSGY+SEAQ ES
Sbjct: 61 TSTSTTPAPGTSGYNSEAQPES 82

BLAST of CcUC03G044380 vs. NCBI nr
Match: KAG6607199.1 (hypothetical protein SDJN03_00541, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 8.0e-10
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 0

Query: 4   NKEQRKQLSDLPPRRGLIKIKIFRSIFRTVKSIPEGFARGRREDETLTSTSTTPAPGTSG 63
           +K  +++ S+LPPRRG I I IF+SIFRT K +PEGF   RR++E+LT +  TPA  +SG
Sbjct: 50  SKAPKRRFSELPPRRGQILIGIFKSIFRTGKPMPEGFESDRRKNESLTLSPITPATNSSG 109

Query: 64  YSSEAQSES 73
           Y+SE QSES
Sbjct: 110 YNSEVQSES 118

BLAST of CcUC03G044380 vs. NCBI nr
Match: KAG6583473.1 (hypothetical protein SDJN03_19405, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.4 bits (137), Expect = 6.0e-05
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 0

Query: 1  MNSNKEQRKQLSDLPPRRGLIKIKIFRSIFRTVKSIPEGFARGRREDETLTSTSTTPAPG 60
          MNS  +Q+K+L++LPPRRG + I IFRSIF+TVK       R RR           PAPG
Sbjct: 1  MNSVTDQKKRLTELPPRRGKVMINIFRSIFKTVK-------RSRR-----------PAPG 50

Query: 61 TSGYSSEA 69
          +SGY+SEA
Sbjct: 61 SSGYNSEA 50

BLAST of CcUC03G044380 vs. ExPASy TrEMBL
Match: A0A5D3CDP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold74032G00010 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-25
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 0

Query: 1  MNSNKEQRKQLSDLPPRRGLIKIKIFRSIFRTVKSIPEGFARGRREDETLTSTSTTPAPG 60
          MNSNKE RK++ + PPRRGLIKIKIFRSIFRTVKSIPEGFAR RREDETLTSTSTTPAPG
Sbjct: 1  MNSNKEPRKRMPEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETLTSTSTTPAPG 60

Query: 61 TSGYSSEAQSES 73
          TSGY+SEAQSES
Sbjct: 61 TSGYNSEAQSES 72

BLAST of CcUC03G044380 vs. ExPASy TrEMBL
Match: A0A0A0LV79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 60/76 (78.95%), Postives = 65/76 (85.53%), Query Frame = 0

Query: 1  MNSNKEQRKQLSDLPPRRGLIKIKIFRSIFRTVKSIPEGFARGRREDE----TLTSTSTT 60
          MNS K+ RK+ ++ PPRRGLIKIKIFRSIFRTVKSIPEGFAR RREDE    T TSTSTT
Sbjct: 1  MNSIKDPRKRQAEFPPRRGLIKIKIFRSIFRTVKSIPEGFARSRREDETPTSTSTSTSTT 60

Query: 61 PAPGTSGYSSEAQSES 73
          PAPGTSGY+SEAQ ES
Sbjct: 61 PAPGTSGYNSEAQPES 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK08469.15.2e-2588.89hypothetical protein E5676_scaffold74032G00010 [Cucumis melo var. makuwa][more]
KAE8652730.11.1e-1973.17hypothetical protein Csa_013247 [Cucumis sativus][more]
KAG6607199.18.0e-1056.52hypothetical protein SDJN03_00541, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583473.16.0e-0551.47hypothetical protein SDJN03_19405, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CDP62.5e-2588.89Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LV791.1e-2078.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077190 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC03G044380.1CcUC03G044380.1mRNA