CcUC02G040450 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G040450
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	AvrRpt-cleavage domain-containing protein
Location	CicolChr02: 35739113 .. 35740342 (-)
RNA-Seq Expression	CcUC02G040450
Synteny	CcUC02G040450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAACAATAGGCGGAGATCTGTTCCAGAATTTGGGGGTTGGGATCACAATGCGCCCGGAGCAAGCAATTATTCTGTTGTGTTTTCTCAAGCTCGTGCCAATAGGAAACAGCAAAAAACTGACTTAACTGAGTTCAAAAGAACCAGCCTAGGGAATGAAAGGGAGTTAATGGCAAGCGCGGATAAGCATCATCGTCAACAAAAACATCACCACCATCGCCATCATCACCGCCATGAACACCAACACCATCGCCCCCGTCACCACCAATATCATCATCAACCACCTGCAGATGACTCTGTTGTCCCAGTAAGCATTTTTGTTTTTTTTCTATTTGTACAAATAAGTGGAAAAATGAGGATTTGAACCTCCAACTTCAAAAAGAATGAGTATTTGCCAATTATTGATGAGCTATGCTTACTTTGGCTTGCCTCGGTTGTTCTTTTCCCACTTTAATCTCACAGTCAAATCTTGAACTACCTAATTTTTTTTTCTTCCAGGAGACAACCCACTTGACTCTACAATGTTTTGGTGAAAAAAAAATTGAAAAATATTAAATCCTAGGTTGGGACTCAGGTTGAACTTATTCTCCCTAAGTTCTTTATCAAAACCATGTTCATCTTCAACGGGTTAATCCAAACTCTGAACTTAATGAAGTAAACCAAGACTGAACAAGAATTAAAATGTAATATTTGAAAACAGAAACTGAAGAAAATTTGTATAGAACGTAGTACCTGTTGGATACTGAGGCTGAGGAACAGATGCTGTATCTAACCCTTGATGGAGGGTTATTTTTTTTGCTATCCATGATGGTGGCAACTTCATTTATAGCCTTCTGTGAAGTTACCCTTCCAGTAATTAGAGCTTTTCCCCAAGTTTAACCACAGCTATAACTTCAAAGTAATACACAACTATCTCAAAATTAAGACTACAATTCTTAATACGGTAGTGTCTTGTTCCAGCATACAAGGAACATAAGGATATTTGTAATAGAAATTATAATAGCAGGCTATGATGGATTTGATATTGACCAAAAAATTAATAGTACATAAATAGATAATGAAAATCTCATAGTACAGTATAAGAAACGTGAGTGATTCCATCATAATTTTTTAAAGAAATTAAATTGCTATAATATTACATATTTAATCCTTGCTCTTTTATTTTTCTCTTATCCAGCAGAAGCAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGA

mRNA sequence

ATGCAGAACAATAGGCGGAGATCTGTTCCAGAATTTGGGGGTTGGGATCACAATGCGCCCGGAGCAAGCAATTATTCTGTTGTGTTTTCTCAAGCTCGTGCCAATAGGAAACAGCAAAAAACTGACTTAACTGAGTTCAAAAGAACCAGCCTAGGGAATGAAAGGGAGTTAATGGCAAGCGCGGATAAGCATCATCGTCAACAAAAACATCACCACCATCGCCATCATCACCGCCATGAACACCAACACCATCGCCCCCTTCTTTATCAAAACCATGTTCATCTTCAACGGGTTAATCCAAACTCTGAACTTAATGAAGTAAACCAAGGTAGTGTCTTGTTCCAGCATACAAGGAACATAAGGATATTTTACAGTATAAGAAACCAGAAGCAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGA

Coding sequence (CDS)

ATGCAGAACAATAGGCGGAGATCTGTTCCAGAATTTGGGGGTTGGGATCACAATGCGCCCGGAGCAAGCAATTATTCTGTTGTGTTTTCTCAAGCTCGTGCCAATAGGAAACAGCAAAAAACTGACTTAACTGAGTTCAAAAGAACCAGCCTAGGGAATGAAAGGGAGTTAATGGCAAGCGCGGATAAGCATCATCGTCAACAAAAACATCACCACCATCGCCATCATCACCGCCATGAACACCAACACCATCGCCCCCTTCTTTATCAAAACCATGTTCATCTTCAACGGGTTAATCCAAACTCTGAACTTAATGAAGTAAACCAAGGTAGTGTCTTGTTCCAGCATACAAGGAACATAAGGATATTTTACAGTATAAGAAACCAGAAGCAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGA

Protein sequence

MQNNRRRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMASADKHHRQQKHHHHRHHHRHEHQHHRPLLYQNHVHLQRVNPNSELNEVNQGSVLFQHTRNIRIFYSIRNQKQKKILTYINCCIRP

Homology

[Close]

BLAST of CcUC02G040450 vs. NCBI nr
Match: XP_038901151.1 (lateral signaling target protein 2 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 154.5 bits (389), Expect = 7.2e-34
Identity = 88/143 (61.54%), Postives = 100/143 (69.93%), Query Frame = 0


Query: 2   QNNRRRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMASA 61
           + NR RSVPEFGGWDHNAPGASNYSVVF+QARA+RKQ+KTDLTEFKRTSLGNERELMA+ 
Sbjct: 6   EKNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQRKTDLTEFKRTSLGNERELMAAT 65

Query: 62  DKHHRQQKHHHHRHHHRHEHQHHRPLLYQNHVHLQRVNPNSELNEVNQGSVLFQHTRNIR 121
            K HR QKHHHHRHHH HE QH     +++H H +   P  +                  
Sbjct: 66  GKCHRHQKHHHHRHHHHHEQQHQHQHQHRHHHHHRHQPPADD------------------ 125

Query: 122 IFYSIRNQKQKKILTYINCCIRP 145
              S+  QK+KKILTYINCCIRP
Sbjct: 126 ---SVVPQKKKKILTYINCCIRP 127

[Close]

BLAST of CcUC02G040450 vs. NCBI nr
Match: XP_038901152.1 (lateral signaling target protein 2 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-32
Identity = 88/143 (61.54%), Postives = 100/143 (69.93%), Query Frame = 0


Query: 2   QNNRRRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMASA 61
           + NR RSVPEFGGWDHNAPGASNYSVVF+QARA+RKQ+KTDLTEFKRTSLGNERELMA+ 
Sbjct: 6   EKNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQRKTDLTEFKRTSLGNERELMAAT 65

Query: 62  DKHHRQQKHHHHRHHHRHEHQHHRPLLYQNHVHLQRVNPNSELNEVNQGSVLFQHTRNIR 121
            K HR QKHHHHRHHH HE QH     +++H H +   P  +       SV+        
Sbjct: 66  GKCHRHQKHHHHRHHHHHEQQHQHQHQHRHHHHHRHQPPADD-------SVV-------- 125

Query: 122 IFYSIRNQKQKKILTYINCCIRP 145
                   K+KKILTYINCCIRP
Sbjct: 126 -------PKKKKILTYINCCIRP 126

[Close]

BLAST of CcUC02G040450 vs. NCBI nr
Match: KAG6605945.1 (hypothetical protein SDJN03_03262, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035891.1 hypothetical protein SDJN02_02690, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-31
Identity = 92/144 (63.89%), Postives = 102/144 (70.83%), Query Frame = 0


Query: 2   QNNRRRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMASA 61
           +NNR +SVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKR SLGNERE+MA A
Sbjct: 7   KNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMA 66

Query: 62  DKHHRQQKHHHHRHHHRHEHQHHRPLLYQNHVHLQ-RVNPNSELNEVNQGSVLFQHTRNI 121
           DKH RQQ HHHHRHH  + H H R   Y++H   Q R+ P+             QH    
Sbjct: 67  DKHLRQQNHHHHRHHSHNSH-HSR---YEHHPQYQHRLRPH-------------QHD--- 126

Query: 122 RIFYSIRNQKQKKILTYINCCIRP 145
                +  QK+KKILTYINCCIRP
Sbjct: 127 ----PVVPQKKKKILTYINCCIRP 126

[Close]

BLAST of CcUC02G040450 vs. NCBI nr
Match: KAE8647369.1 (hypothetical protein Csa_004264 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-28
Identity = 69/83 (83.13%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 2  QNNRRRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMASA 61
          +NNR RSVPEFGGWDHNAPGASNYSVVF+QARA+RKQQKTDLTEFK+TSLGNE+ELM + 
Sbjct: 6  ENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKELMEAV 65

Query: 62 DKHHRQQKHHHHRHHHRHEHQHH 85
          DKHHR QKH HHRH HRH H HH
Sbjct: 66 DKHHRHQKHRHHRHRHRHHHHHH 88

[Close]

BLAST of CcUC02G040450 vs. NCBI nr
Match: XP_023512837.1 (dendritic arbor reduction protein 1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.2 bits (313), Expect = 4.7e-25
Identity = 77/141 (54.61%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 4   NRRRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMASADK 63
           NR +SVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKR SLGNE+ELMA ADK
Sbjct: 7   NRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADK 66

Query: 64  HHRQQKHHHHRHHHRHEHQHHRPLLYQNHVHLQRVNPNSELNEVNQGSVLFQHTRNIRIF 123
           H R   HH HRH H H HQHH           QR +P               H   + + 
Sbjct: 67  HDR---HHQHRHRHEHRHQHHH----------QRHHP---------------HHGQLPVD 119

Query: 124 YSIRNQKQKKILTYINCCIRP 145
            ++  QK+KKIL+ ++CCI+P
Sbjct: 127 GAVVGQKKKKILSCMSCCIKP 119

[Close]

BLAST of CcUC02G040450 vs. ExPASy TrEMBL
Match: A0A0A0KK09 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G430670 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 7.7e-34
Identity = 87/143 (60.84%), Postives = 102/143 (71.33%), Query Frame = 0


Query: 2   QNNRRRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMASA 61
           +NNR RSVPEFGGWDHNAPGASNYSVVF+QARA+RKQQKTDLTEFK+TSLGNE+ELM + 
Sbjct: 6   ENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKELMEAV 65

Query: 62  DKHHRQQKHHHHRHHHRHEHQHHRPLLYQNHVHLQRVNPNSELNEVNQGSVLFQHTRNIR 121
           DKHHR QKH HHRH HRH H HH      +H H  + + +   ++   G           
Sbjct: 66  DKHHRHQKHRHHRHRHRHHHHHHHD---HDHDHEHQHHHHQHHHQSPPGD---------- 125

Query: 122 IFYSIRNQKQKKILTYINCCIRP 145
              S+  +K+KKILTYINCCIRP
Sbjct: 126 --DSVGPEKKKKILTYINCCIRP 133

[Close]

BLAST of CcUC02G040450 vs. ExPASy TrEMBL
Match: A0A6J1JEB9 (dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483749 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.9e-24
Identity = 75/141 (53.19%), Postives = 93/141 (65.96%), Query Frame = 0


Query: 4   NRRRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMASADK 63
           NR +SVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKR SLGNE+ELMA ADK
Sbjct: 7   NRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADK 66

Query: 64  HHRQQKHHHHRHHHRHEHQHHRPLLYQNHVHLQRVNPNSELNEVNQGSVLFQHTRNIRIF 123
           H R  + HHHR  HRH+H HHR     +H H  ++  +                      
Sbjct: 67  HDRHHQ-HHHRREHRHQHHHHR-----HHPHHGQLPADG--------------------- 119

Query: 124 YSIRNQKQKKILTYINCCIRP 145
            ++  QK+KKIL+ ++CCI+P
Sbjct: 127 -AVVGQKKKKILSCMSCCIKP 119

[Close]

BLAST of CcUC02G040450 vs. ExPASy TrEMBL
Match: A0A6J1FT95 (dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448272 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.9e-24
Identity = 76/141 (53.90%), Postives = 91/141 (64.54%), Query Frame = 0


Query: 4   NRRRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMASADK 63
           NR +SVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKR SLGNE+ELMA ADK
Sbjct: 7   NRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADK 66

Query: 64  HHRQQKHHHHRHHHRHEHQHHRPLLYQNHVHLQRVNPNSELNEVNQGSVLFQHTRNIRIF 123
           H R   HH HRH H H  QHH           QR +P               H   + + 
Sbjct: 67  HDR---HHQHRHRHEHRQQHHH----------QRHHP---------------HHGQLPVG 119

Query: 124 YSIRNQKQKKILTYINCCIRP 145
            ++  QK+KKIL+ ++CCI+P
Sbjct: 127 GAVVGQKKKKILSCMSCCIKP 119

[Close]

BLAST of CcUC02G040450 vs. ExPASy TrEMBL
Match: A0A6J1JCC4 (dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483749 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 76/141 (53.90%), Postives = 94/141 (66.67%), Query Frame = 0


Query: 4   NRRRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMASADK 63
           NR +SVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKR SLGNE+ELMA ADK
Sbjct: 7   NRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADK 66

Query: 64  HHRQQKHHHHRHHHRHEHQHHRPLLYQNHVHLQRVNPNSELNEVNQGSVLFQHTRNIRIF 123
           H R  + HHHR  HRH+H HHR     +H H  ++  +        G+V+          
Sbjct: 67  HDRHHQ-HHHRREHRHQHHHHR-----HHPHHGQLPAD--------GAVV---------- 118

Query: 124 YSIRNQKQKKILTYINCCIRP 145
                 K+KKIL+ ++CCI+P
Sbjct: 127 -----GKKKKILSCMSCCIKP 118

[Close]

BLAST of CcUC02G040450 vs. ExPASy TrEMBL
Match: A0A6J1FX29 (dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448272 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.6e-23
Identity = 77/141 (54.61%), Postives = 91/141 (64.54%), Query Frame = 0


Query: 4   NRRRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMASADK 63
           NR +SVPEFGGWD+N P ASNYSVVFS+ARAN+KQQKTDLTEFKR SLGNE+ELMA ADK
Sbjct: 7   NRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADK 66

Query: 64  HHRQQKHHHHRHHHRHEHQHHRPLLYQNHVHLQRVNPNSELNEVNQGSVLFQHTRNIRIF 123
           H R   HH HRH H H  QHH           QR +P+     V  G+V+          
Sbjct: 67  HDR---HHQHRHRHEHRQQHHH----------QRHHPHHGQLPVG-GAVV---------- 118

Query: 124 YSIRNQKQKKILTYINCCIRP 145
                 K+KKIL+ ++CCI+P
Sbjct: 127 -----GKKKKILSCMSCCIKP 118

[Close]

BLAST of CcUC02G040450 vs. TAIR 10
Match: AT5G19473.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-13
Identity = 54/137 (39.42%), Postives = 69/137 (50.36%), Query Frame = 0


Query: 9   VPEFGGWDHNAPG-ASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMASADKHHRQ 68
           VP+FGGWD   P  A+NYSVVFS+ARANRKQ K  +   + +SLG+E+ELM S  ++H+Q
Sbjct: 13  VPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGV---RHSSLGSEQELMVSVRRNHQQ 72

Query: 69  QKHHHHRHHHRHEHQHHRPLLYQNHVHLQRVNPNSELNEVNQGSVLFQHTRNIRIFYSIR 128
                   HHRHE Q   P++                                       
Sbjct: 73  L-------HHRHETQDDDPVM--------------------------------------- 98

Query: 129 NQKQKKILTYINCCIRP 145
             K+K+ILTYINCCIRP
Sbjct: 133 --KKKRILTYINCCIRP 98

The following BLAST results are available for this feature:

BLAST of CcUC02G040450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901151.1	7.2e-34	61.54	lateral signaling target protein 2 homolog isoform X1 [Benincasa hispida]	[more]
XP_038901152.1	1.4e-32	61.54	lateral signaling target protein 2 homolog isoform X2 [Benincasa hispida]	[more]
KAG6605945.1	1.1e-31	63.89	hypothetical protein SDJN03_03262, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8647369.1	2.6e-28	83.13	hypothetical protein Csa_004264 [Cucumis sativus]	[more]
XP_023512837.1	4.7e-25	54.61	dendritic arbor reduction protein 1 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CcUC02G040450 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G040450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK09	7.7e-34	60.84	AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G43...	[more]
A0A6J1JEB9	1.9e-24	53.19	dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FT95	1.9e-24	53.90	dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JCC4	1.2e-23	53.90	dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FX29	3.6e-23	54.61	dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of CcUC02G040450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19473.1	2.6e-13	39.42	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 4..37 e-value: 1.2E-8 score: 34.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..83
None	No IPR available	PANTHER	PTHR33882	PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEIN	coord: 2..143
None	No IPR available	PANTHER	PTHR33882:SF11	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 2..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G040450.1	CcUC02G040450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane