CcUC02G040010 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G040010
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Poly(A)-specific ribonuclease
Location	CicolChr02: 35299308 .. 35299610 (+)
RNA-Seq Expression	CcUC02G040010
Synteny	CcUC02G040010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACTGAATTCCCCGGCGTCCTCATCCGCCTCTCCGATCACTACCTTCTCCTCAAGTCCAACGTCGACGCCGACGTCGACCTCCCCACACTTGCCACCCACCAGACCTTCATTTGGGAGTTCAATTTTAGGGATTTCGACGTCGCTCCTGACCTTCACGCTCCCGATTCCATCGATCTCTTGAAACGACAGTGCATTGATTTCGAACGCAACAGAGTTCAGGGGGTTCACTCCTCCTGGTTCGCCGAGTTGATGATGTCATCCGGTCTTCTTTGTGATGACTCGGTCACTTGCCGATGA

mRNA sequence

ATGGACACTGAATTCCCCGGCGTCCTCATCCGCCTCTCCGATCACTACCTTCTCCTCAAGTCCAACGTCGACGCCGACGTCGACCTCCCCACACTTGCCACCCACCAGACCTTCATTTGGGAGTTCAATTTTAGGGATTTCGACGTCGCTCCTGACCTTCACGCTCCCGATTCCATCGATCTCTTGAAACGACAGTGCATTGATTTCGAACGCAACAGAGTTCAGGGGGTTCACTCCTCCTGGTTCGCCGAGTTGATGATGTCATCCGGTCTTCTTTGTGATGACTCGGTCACTTGCCGATGA

Coding sequence (CDS)

ATGGACACTGAATTCCCCGGCGTCCTCATCCGCCTCTCCGATCACTACCTTCTCCTCAAGTCCAACGTCGACGCCGACGTCGACCTCCCCACACTTGCCACCCACCAGACCTTCATTTGGGAGTTCAATTTTAGGGATTTCGACGTCGCTCCTGACCTTCACGCTCCCGATTCCATCGATCTCTTGAAACGACAGTGCATTGATTTCGAACGCAACAGAGTTCAGGGGGTTCACTCCTCCTGGTTCGCCGAGTTGATGATGTCATCCGGTCTTCTTTGTGATGACTCGGTCACTTGCCGATGA

Protein sequence

MDTEFPGVLIRLSDHYLLLKSNVDADVDLPTLATHQTFIWEFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSVTCR

Homology

[Close]

BLAST of CcUC02G040010 vs. NCBI nr
Match: XP_038901771.1 (probable CCR4-associated factor 1 homolog 11 [Benincasa hispida])

HSP 1 Score: 149.4 bits (376), Expect = 1.6e-32
Identity = 80/120 (66.67%), Postives = 86/120 (71.67%), Query Frame = 0


Query: 1   MDTEFPGVLI---------RLSDHYLLLKSNV-------------DADVDLPTLATHQTF 60
           MDTEFPGV+I         R SDHYLLLKSNV             DAD +LPTL T   F
Sbjct: 32  MDTEFPGVVIRPALHRPRLRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDNCF 91

Query: 61  IWEFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSVT 99
           IWEFNFRDFDV  DLHAPDSI+LLKRQ IDFERNR+ GV SS FAEL+MSSGLLC+DSVT
Sbjct: 92  IWEFNFRDFDVVRDLHAPDSIELLKRQGIDFERNRIHGVPSSRFAELLMSSGLLCNDSVT 151

[Close]

BLAST of CcUC02G040010 vs. NCBI nr
Match: XP_022957732.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6605970.1 putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.4 bits (363), Expect = 5.2e-31
Identity = 76/118 (64.41%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 1   MDTEFPGVLI-------RLSDHYLLLKSNV-------------DADVDLPTLATHQTFIW 60
           MDTEFPGV++       R SDHYLLLKSNV             DAD +LPTL T + FIW
Sbjct: 39  MDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIW 98

Query: 61  EFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSVT 99
           EFNFRDFDV  DLHAPDSIDLLKRQ IDFERNR  GV S+ F+EL+MSSGLLC+ SV+
Sbjct: 99  EFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVS 156

[Close]

BLAST of CcUC02G040010 vs. NCBI nr
Match: KAG7035921.1 (putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 5.2e-31
Identity = 76/118 (64.41%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 1   MDTEFPGVLI-------RLSDHYLLLKSNV-------------DADVDLPTLATHQTFIW 60
           MDTEFPGV++       R SDHYLLLKSNV             DAD +LPTL T + FIW
Sbjct: 90  MDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIW 149

Query: 61  EFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSVT 99
           EFNFRDFDV  DLHAPDSIDLLKRQ IDFERNR  GV S+ F+EL+MSSGLLC+ SV+
Sbjct: 150 EFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVS 207

[Close]

BLAST of CcUC02G040010 vs. NCBI nr
Match: XP_023534188.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo] >XP_023534282.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 5.2e-31
Identity = 76/118 (64.41%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 1   MDTEFPGVLI-------RLSDHYLLLKSNV-------------DADVDLPTLATHQTFIW 60
           MDTEFPGV++       R SDHYLLLKSNV             DAD +LPTL T + FIW
Sbjct: 87  MDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIW 146

Query: 61  EFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSVT 99
           EFNFRDFDV  DLHAPDSIDLLKRQ IDFERNR  GV S+ F+EL+MSSGLLC+ SV+
Sbjct: 147 EFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVS 204

[Close]

BLAST of CcUC02G040010 vs. NCBI nr
Match: XP_022995114.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima])

HSP 1 Score: 144.4 bits (363), Expect = 5.2e-31
Identity = 76/118 (64.41%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 1   MDTEFPGVLI-------RLSDHYLLLKSNV-------------DADVDLPTLATHQTFIW 60
           MDTEFPGV++       R SDHYLLLKSNV             DAD +LPTL T + FIW
Sbjct: 89  MDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIW 148

Query: 61  EFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSVT 99
           EFNFRDFDV  DLHAPDSIDLLKRQ IDFERNR  GV S+ F+EL+MSSGLLC+ SV+
Sbjct: 149 EFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVS 206

[Close]

BLAST of CcUC02G040010 vs. ExPASy Swiss-Prot
Match: Q9LXM2 (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-26
Identity = 68/120 (56.67%), Postives = 79/120 (65.83%), Query Frame = 0


Query: 1   MDTEFPGVLIRL-------SDHYLLLKSNVDA-----------DV--DLPTLA--THQTF 60
           MDTEFPGV+ +         D Y LLK+NVDA           DV  +LP L    H+ F
Sbjct: 46  MDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGF 105

Query: 61  IWEFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSVT 99
           IWEFNFRDFDVA D HAPDSI+LL+RQ IDFERN   GV S  FAELMMSSGL+C++ V+
Sbjct: 106 IWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVS 165

[Close]

BLAST of CcUC02G040010 vs. ExPASy Swiss-Prot
Match: Q9FMS6 (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.4e-25
Identity = 68/123 (55.28%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 1   MDTEFPG--------VLIRLSDHYL--LLKSNV-------------DADVDLPTLA--TH 60
           MDTEFPG        VL R + +YL  LLKSNV             DAD +LP L    +
Sbjct: 41  MDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKN 100

Query: 61  QTFIWEFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDD 99
           + +IWEFNFRDFDV  D HAPDSI+LL+R  IDFERNR +GV S  FAELMMSSGL+C++
Sbjct: 101 RRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNE 160

[Close]

BLAST of CcUC02G040010 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.8e-18
Identity = 48/118 (40.68%), Postives = 70/118 (59.32%), Query Frame = 0


Query: 1   MDTEFPGVLIR--------LSDHYLLLKSNV-------------DADVDLPTLATHQTFI 60
           MDTEFPG+++R           HY  LK+NV             +   +LPT  T +  I
Sbjct: 39  MDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCI 98

Query: 61  WEFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSV 98
           W+FNFR+FD+  D+ A DSI+LLK+  ID  +N + G+ S  FAEL+MSSG++ +++V
Sbjct: 99  WQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENV 156

[Close]

BLAST of CcUC02G040010 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-17
Identity = 49/119 (41.18%), Postives = 70/119 (58.82%), Query Frame = 0


Query: 1   MDTEFPGVLIR--------LSDHYLLLKSNV-------------DADVDLPTLATHQTF- 60
           MDTEFPG++ R           HY  LK+NV             D   +LPT  T   + 
Sbjct: 39  MDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYC 98

Query: 61  IWEFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSV 98
           IW+FNFR+FD+  D++A DSI+LL++  IDF +N   G+ S  FAEL+MSSG++ +++V
Sbjct: 99  IWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENV 157

[Close]

BLAST of CcUC02G040010 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-16
Identity = 45/119 (37.82%), Postives = 72/119 (60.50%), Query Frame = 0


Query: 1   MDTEFPGVLIR--------LSDHYLLLKSNV-------------DADVDLPTLATHQTFI 60
           MDTEFPGV+++           +Y  LK NV             D + +LPT  T +  I
Sbjct: 39  MDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCI 98

Query: 61  WEFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSVT 99
           W+FNFR+F++  D++A +SI+LL++  IDF++N  +G+    F ELMMSSG++ +D+++
Sbjct: 99  WQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAIS 157

[Close]

BLAST of CcUC02G040010 vs. ExPASy TrEMBL
Match: A0A6J1K4S7 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111490755 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.5e-31
Identity = 76/118 (64.41%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 1   MDTEFPGVLI-------RLSDHYLLLKSNV-------------DADVDLPTLATHQTFIW 60
           MDTEFPGV++       R SDHYLLLKSNV             DAD +LPTL T + FIW
Sbjct: 89  MDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIW 148

Query: 61  EFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSVT 99
           EFNFRDFDV  DLHAPDSIDLLKRQ IDFERNR  GV S+ F+EL+MSSGLLC+ SV+
Sbjct: 149 EFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVS 206

[Close]

BLAST of CcUC02G040010 vs. ExPASy TrEMBL
Match: A0A6J1GZY2 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111459188 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.5e-31
Identity = 76/118 (64.41%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 1   MDTEFPGVLI-------RLSDHYLLLKSNV-------------DADVDLPTLATHQTFIW 60
           MDTEFPGV++       R SDHYLLLKSNV             DAD +LPTL T + FIW
Sbjct: 39  MDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIW 98

Query: 61  EFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSVT 99
           EFNFRDFDV  DLHAPDSIDLLKRQ IDFERNR  GV S+ F+EL+MSSGLLC+ SV+
Sbjct: 99  EFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVS 156

[Close]

BLAST of CcUC02G040010 vs. ExPASy TrEMBL
Match: A0A0A0KI60 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_6G425790 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.8e-29
Identity = 75/120 (62.50%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 1   MDTEFPGVLI---------RLSDHYLLLKSNV-------------DADVDLPTLATHQTF 60
           +DTEFPGVLI         R SDHYLLLKSNV             DA  +LPTL T  +F
Sbjct: 32  IDTEFPGVLIRPTLHRHPLRPSDHYLLLKSNVDALNLIQLGLTLSDAHGNLPTLGTKNSF 91

Query: 61  IWEFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSVT 99
           IWEFNFRDFDVA D HAPDSI+LLK+Q IDF RNR  GV SS FA+L+MSSGLLC+DS+T
Sbjct: 92  IWEFNFRDFDVARDPHAPDSIELLKQQGIDFHRNRTHGVCSSRFADLVMSSGLLCNDSLT 151

[Close]

BLAST of CcUC02G040010 vs. ExPASy TrEMBL
Match: C4P742 (Poly(A)-specific ribonuclease OS=Dimocarpus longan OX=128017 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.0e-28
Identity = 72/121 (59.50%), Postives = 81/121 (66.94%), Query Frame = 0


Query: 1   MDTEFPGVLIRL----------SDHYLLLKSNVDA-------------DVDLPTLATHQT 60
           MDTEFPG++ R           SDHY LLKSNVDA               +LP L T   
Sbjct: 40  MDTEFPGIIYRSSKPYHSQRQPSDHYELLKSNVDALNLIQVGLTLSDSSGNLPDLGTDNQ 99

Query: 61  FIWEFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSV 99
           FIW+FNFRDFDVA D HAPDSIDLL+RQ IDFERNR +GV S  FAELMMSSGL+C+DSV
Sbjct: 100 FIWQFNFRDFDVASDAHAPDSIDLLRRQGIDFERNRKEGVDSVRFAELMMSSGLVCNDSV 159

[Close]

BLAST of CcUC02G040010 vs. ExPASy TrEMBL
Match: A0A5C7IWS3 (Poly(A)-specific ribonuclease OS=Acer yangbiense OX=1000413 GN=EZV62_002127 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.4e-28
Identity = 72/125 (57.60%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 1   MDTEFPGVLI--------------RLSDHYLLLKSNVDA-------------DVDLPTLA 60
           MDTEFPG++               R SDHY LLKSNVDA               +LP L 
Sbjct: 37  MDTEFPGIIYRPTVYPTKPFHLQRRPSDHYKLLKSNVDALNLIQVGLTLSDSSGNLPDLG 96

Query: 61  THQTFIWEFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLC 99
           T   FIW+FNFRDFDVA D HAPDSIDLL+RQ IDFERNR +GV S  FAELMMSSGL+C
Sbjct: 97  TENQFIWQFNFRDFDVASDAHAPDSIDLLRRQGIDFERNREEGVDSVRFAELMMSSGLVC 156

[Close]

BLAST of CcUC02G040010 vs. TAIR 10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-27
Identity = 68/120 (56.67%), Postives = 79/120 (65.83%), Query Frame = 0


Query: 1   MDTEFPGVLIRL-------SDHYLLLKSNVDA-----------DV--DLPTLA--THQTF 60
           MDTEFPGV+ +         D Y LLK+NVDA           DV  +LP L    H+ F
Sbjct: 46  MDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGF 105

Query: 61  IWEFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSVT 99
           IWEFNFRDFDVA D HAPDSI+LL+RQ IDFERN   GV S  FAELMMSSGL+C++ V+
Sbjct: 106 IWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVS 165

[Close]

BLAST of CcUC02G040010 vs. TAIR 10
Match: AT5G22250.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 115.5 bits (288), Expect = 2.4e-26
Identity = 68/123 (55.28%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 1   MDTEFPG--------VLIRLSDHYL--LLKSNV-------------DADVDLPTLA--TH 60
           MDTEFPG        VL R + +YL  LLKSNV             DAD +LP L    +
Sbjct: 41  MDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKN 100

Query: 61  QTFIWEFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDD 99
           + +IWEFNFRDFDV  D HAPDSI+LL+R  IDFERNR +GV S  FAELMMSSGL+C++
Sbjct: 101 RRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNE 160

[Close]

BLAST of CcUC02G040010 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 4.8e-19
Identity = 48/118 (40.68%), Postives = 70/118 (59.32%), Query Frame = 0


Query: 1   MDTEFPGVLIR--------LSDHYLLLKSNV-------------DADVDLPTLATHQTFI 60
           MDTEFPG+++R           HY  LK+NV             +   +LPT  T +  I
Sbjct: 39  MDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCI 98

Query: 61  WEFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSV 98
           W+FNFR+FD+  D+ A DSI+LLK+  ID  +N + G+ S  FAEL+MSSG++ +++V
Sbjct: 99  WQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENV 156

[Close]

BLAST of CcUC02G040010 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 4.8e-19
Identity = 48/118 (40.68%), Postives = 70/118 (59.32%), Query Frame = 0


Query: 1   MDTEFPGVLIR--------LSDHYLLLKSNV-------------DADVDLPTLATHQTFI 60
           MDTEFPG+++R           HY  LK+NV             +   +LPT  T +  I
Sbjct: 39  MDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCI 98

Query: 61  WEFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSV 98
           W+FNFR+FD+  D+ A DSI+LLK+  ID  +N + G+ S  FAEL+MSSG++ +++V
Sbjct: 99  WQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENV 156

[Close]

BLAST of CcUC02G040010 vs. TAIR 10
Match: AT1G80780.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 4.8e-19
Identity = 48/118 (40.68%), Postives = 70/118 (59.32%), Query Frame = 0


Query: 1   MDTEFPGVLIR--------LSDHYLLLKSNV-------------DADVDLPTLATHQTFI 60
           MDTEFPG+++R           HY  LK+NV             +   +LPT  T +  I
Sbjct: 39  MDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCI 98

Query: 61  WEFNFRDFDVAPDLHAPDSIDLLKRQCIDFERNRVQGVHSSWFAELMMSSGLLCDDSV 98
           W+FNFR+FD+  D+ A DSI+LLK+  ID  +N + G+ S  FAEL+MSSG++ +++V
Sbjct: 99  WQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENV 156

The following BLAST results are available for this feature:

BLAST of CcUC02G040010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901771.1	1.6e-32	66.67	probable CCR4-associated factor 1 homolog 11 [Benincasa hispida]	[more]
XP_022957732.1	5.2e-31	64.41	probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6605970.1 ...	[more]
KAG7035921.1	5.2e-31	64.41	putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp...	[more]
XP_023534188.1	5.2e-31	64.41	probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
XP_022995114.1	5.2e-31	64.41	probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima]	[more]

BLAST of CcUC02G040010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXM2	2.3e-26	56.67	Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9FMS6	3.4e-25	55.28	Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SAI2	6.8e-18	40.68	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SKZ2	2.0e-17	41.18	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LEU4	2.9e-16	37.82	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of CcUC02G040010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K4S7	2.5e-31	64.41	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111490755 PE=3 S...	[more]
A0A6J1GZY2	2.5e-31	64.41	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111459188 PE=3...	[more]
A0A0A0KI60	1.8e-29	62.50	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_6G425790 PE=3 SV...	[more]
C4P742	2.0e-28	59.50	Poly(A)-specific ribonuclease OS=Dimocarpus longan OX=128017 PE=2 SV=1	[more]
A0A5C7IWS3	4.4e-28	57.60	Poly(A)-specific ribonuclease OS=Acer yangbiense OX=1000413 GN=EZV62_002127 PE=3...	[more]

BLAST of CcUC02G040010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44260.1	1.7e-27	56.67	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G22250.1	2.4e-26	55.28	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	4.8e-19	40.68	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	4.8e-19	40.68	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.3	4.8e-19	40.68	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..99 e-value: 1.1E-18 score: 69.1
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 1..98
None	No IPR available	PANTHER	PTHR10797:SF10	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED	coord: 1..98
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G040010.1	CcUC02G040010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0000932	P-body
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity