CcUC02G039680 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G039680
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	60S acidic ribosomal protein family
Location	CicolChr02: 34988910 .. 34990048 (-)
RNA-Seq Expression	CcUC02G039680
Synteny	CcUC02G039680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGCCATTTTTTGCTTTCATTCTTTGACTGACGGCTCCGATCTCTCTCACTCTTCGTTGCAGCTTCTGTTTTGAACTTTCTCAAGTATTCTCTCTTCTCCCAATCTTGTGTTTTCCATTGATTCTTCTATGTAATTTCTTCTCATTTCTGGTGTTTCACATTTGATGTTGTGGAAGCAGAGATGAAGGTCGTCGCTGCATATTTGTTGGCCGTTCTCGGTGGCAACACCAACCCCGGACTCGATGACGTGAAGTCTATTCTTAATTCAGGTTCTTATTTCACGAACTATTTGTCTTTTACTTATAGATTTATTTGCTATTCTGGTGGTTTTATTGCTTTCGTAGATAGAGTGAATGTTATAAGGTCTGGGAAATGAGAACGATTGGGCTTTGTTCGATCTGAATGTTTAGGTTAGCCTAGCATTTTCTTTATGACTTAGCTAGGAAGGAGCTGGAAAATAAGTGAAATGTTGAAATGCCTGACCTAAAATGATGGGCGCTGTTAGGGAATTTGCGTTAAGATTTCTGGTGGGGTTTTTATGAACAGTTGGGGCTGAGGTGGATGACGAAAGGATTGGCTTGCTACTATCCGAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTGCCATCTGGTGGCGGTGCAGTTGCCGTTGCCACCCCGGCCGGTGGTGCTGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGTAAGTGTTTACCCTGTCATTTCTTAGGATTTGCTCATTTGGATTTGCTTTGCTGTGTGTAATATGTGAATGACTTGCTCTAGGAATAATGTGCCTAAATTTTATGTTCTGTCTTTCTGCAGGATATGGGTTTCAGCCTCTTTGACTGAGCAACTCATTTGGTGTCGTTATCAGTTAGTGTTTTAGTTGATTTTCGATCAAGTTTCCGAGCTTTGGTAGCTTGGTAGGGGTTTTTTCTTTTGACTTATTTAGAACTCAAAAATTTTGATAGAAGAAAGTTCAATTTTCAATTTCAATATTTCAGTAATTACTGTCATCTGACTTGGTTTGTGATCTATAATTCCCCCTGTTTCTTACTCA

mRNA sequence

CCGCCATTTTTTGCTTTCATTCTTTGACTGACGGCTCCGATCTCTCTCACTCTTCGTTGCAGCTTCTGTTTTGAACTTTCTCAAAGATGAAGGTCGTCGCTGCATATTTGTTGGCCGTTCTCGGTGGCAACACCAACCCCGGACTCGATGACGTGAAGTCTATTCTTAATTCAGTTGGGGCTGAGGTGGATGACGAAAGGATTGGCTTGCTACTATCCGAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTGCCATCTGGTGGCGGTGCAGTTGCCGTTGCCACCCCGGCCGGTGGTGCTGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGATATGGGTTTCAGCCTCTTTGACTGAGCAACTCATTTGGTGTCGTTATCAGTTAGTGTTTTAGTTGATTTTCGATCAAGTTTCCGAGCTTTGGTAGCTTGGTAGGGGTTTTTTCTTTTGACTTATTTAGAACTCAAAAATTTTGATAGAAGAAAGTTCAATTTTCAATTTCAATATTTCAGTAATTACTGTCATCTGACTTGGTTTGTGATCTATAATTCCCCCTGTTTCTTACTCA

Coding sequence (CDS)

ATGAAGGTCGTCGCTGCATATTTGTTGGCCGTTCTCGGTGGCAACACCAACCCCGGACTCGATGACGTGAAGTCTATTCTTAATTCAGTTGGGGCTGAGGTGGATGACGAAAGGATTGGCTTGCTACTATCCGAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTGCCATCTGGTGGCGGTGCAGTTGCCGTTGCCACCCCGGCCGGTGGTGCTGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGATATGGGTTTCAGCCTCTTTGACTGA

Protein sequence

MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGREKLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

Homology

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BLAST of CcUC02G039680 vs. NCBI nr
Match: XP_038901119.1 (60S acidic ribosomal protein P2B-like [Benincasa hispida])

HSP 1 Score: 193.0 bits (489), Expect = 1.5e-45
Identity = 107/115 (93.04%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGN +PGLDDVKSILNSVGAEVDD+RIGLLLS+VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNPSPGLDDVKSILNSVGAEVDDDRIGLLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGA+AV+ PAGGAAGGGAA AAAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAIAVSAPAGGAAGGGAALAAAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of CcUC02G039680 vs. NCBI nr
Match: KAG6570492.1 (60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.3 bits (482), Expect = 9.4e-45
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD++RI  LLS+VKGKDITELIASGRE
Sbjct: 70  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 129

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAV +A PAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 130 KLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 184

[Close]

BLAST of CcUC02G039680 vs. NCBI nr
Match: KAG7010354.1 (60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.3 bits (482), Expect = 9.4e-45
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD++RI  LLS+VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAV +A PAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of CcUC02G039680 vs. NCBI nr
Match: XP_022986046.1 (60S acidic ribosomal protein P2B-like [Cucurbita maxima])

HSP 1 Score: 188.7 bits (478), Expect = 2.7e-44
Identity = 104/115 (90.43%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD++RI  LLS+VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAV +A PAGGAAGGGAAPAA EQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAPAAVEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of CcUC02G039680 vs. NCBI nr
Match: XP_022944125.1 (60S acidic ribosomal protein P2B-like [Cucurbita moschata])

HSP 1 Score: 188.7 bits (478), Expect = 2.7e-44
Identity = 104/115 (90.43%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD++RI  LLS+VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAV +A PAGG AGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of CcUC02G039680 vs. ExPASy Swiss-Prot
Match: O24415 (60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.2e-35
Identity = 85/115 (73.91%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKV+AAYLLAVLGGNT+P  DDVKSIL SVGAE D+E++  LL+E+K KDITE+IA+GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           +L+SVPSGGGA+ +  PA   AGGGAAP A E KKEEKVEEKEESD+DMGFSLFD
Sbjct: 61  RLSSVPSGGGAIDMGAPA-AVAGGGAAP-AEEAKKEEKVEEKEESDEDMGFSLFD 113

[Close]

BLAST of CcUC02G039680 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 142.1 bits (357), Expect = 3.9e-33
Identity = 85/115 (73.91%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MK VAAYLLAVL GN +P  DD+ +IL SVG EVD+E++ LLLS++ GKDITELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           K ASVP GGG VAVA  A   A GGAAP AAE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KFASVPCGGGGVAVA--AAAPAAGGAAP-AAEAKKEEKVEEKEESDDDMGFSLFD 112

[Close]

BLAST of CcUC02G039680 vs. ExPASy Swiss-Prot
Match: P51407 (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2)

HSP 1 Score: 139.0 bits (349), Expect = 3.3e-32
Identity = 83/116 (71.55%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKVVAA+LLAVL G  +P   D+K IL SVGAE +D +I LLL EVKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPS GGG VAVA+   G  GGG AP AAE KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAP-AAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CcUC02G039680 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 7.3e-32
Identity = 83/116 (71.55%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  +P   D+K+IL SVGAE +D +I LLL EVKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPS GGG VAVA+   G  GGG A +AAE KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGA-SAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CcUC02G039680 vs. ExPASy Swiss-Prot
Match: P41099 (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-31
Identity = 82/115 (71.30%), Postives = 96/115 (83.48%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKV+AA+LLA+LGGNT+P  +D+KSIL SVGA+ DD++I LLLS+VKGKDITELIASGRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           +LASVPSGGG VAVA  AGG  G   A AA E KKEEK E  EESD+++GFSLFD
Sbjct: 61  RLASVPSGGG-VAVAAAAGGGGGDAPAAAAEEPKKEEKSE--EESDEELGFSLFD 112

[Close]

BLAST of CcUC02G039680 vs. ExPASy TrEMBL
Match: A0A6J1J9Z4 (60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC111483902 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 104/115 (90.43%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD++RI  LLS+VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAV +A PAGGAAGGGAAPAA EQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAPAAVEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of CcUC02G039680 vs. ExPASy TrEMBL
Match: A0A6J1FYH3 (60S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111448674 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.3e-44
Identity = 104/115 (90.43%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNT+PGLDDVK ILNSVGAEVD++RI  LLS+VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAV +A PAGG AGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of CcUC02G039680 vs. ExPASy TrEMBL
Match: A0A5A7SR49 (60S acidic ribosomal protein P2B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00400 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.9e-44
Identity = 102/115 (88.70%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNT+PG+DDVK+ILNSVG E+D+ERI LLLSEVKGKD+TELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGA+AV+  AGGAAGGGAAPA AEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of CcUC02G039680 vs. ExPASy TrEMBL
Match: A0A1S3C8T5 (60S acidic ribosomal protein P2B-like OS=Cucumis melo OX=3656 GN=LOC103497955 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.9e-44
Identity = 102/115 (88.70%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNT+PG+DDVK+ILNSVG E+D+ERI LLLSEVKGKD+TELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGA+AV+  AGGAAGGGAAPA AEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of CcUC02G039680 vs. ExPASy TrEMBL
Match: A0A6J1DJB9 (60S acidic ribosomal protein P2B-like OS=Momordica charantia OX=3673 GN=LOC111020580 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 102/115 (88.70%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVLGGNT+PG DDVK+ILNSVG EVD++RI  LLS+VKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAVAVA PAGGAAGGGAAPAAAE+KKEEKVEEKE+SDDD+GFSLFD
Sbjct: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVEEKEDSDDDLGFSLFD 115

[Close]

BLAST of CcUC02G039680 vs. TAIR 10
Match: AT2G27720.1 (60S acidic ribosomal protein family )

HSP 1 Score: 139.0 bits (349), Expect = 2.3e-33
Identity = 83/116 (71.55%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKVVAA+LLAVL G  +P   D+K IL SVGAE +D +I LLL EVKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPS GGG VAVA+   G  GGG AP AAE KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAP-AAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CcUC02G039680 vs. TAIR 10
Match: AT2G27710.1 (60S acidic ribosomal protein family )

HSP 1 Score: 137.9 bits (346), Expect = 5.2e-33
Identity = 83/116 (71.55%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  +P   D+K+IL SVGAE +D +I LLL EVKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPS GGG VAVA+   G  GGG A +AAE KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGA-SAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CcUC02G039680 vs. TAIR 10
Match: AT2G27710.2 (60S acidic ribosomal protein family )

HSP 1 Score: 137.9 bits (346), Expect = 5.2e-33
Identity = 83/116 (71.55%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  +P   D+K+IL SVGAE +D +I LLL EVKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPS GGG VAVA+   G  GGG A +AAE KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGA-SAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CcUC02G039680 vs. TAIR 10
Match: AT2G27710.3 (60S acidic ribosomal protein family )

HSP 1 Score: 137.9 bits (346), Expect = 5.2e-33
Identity = 83/116 (71.55%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKVVAAYLLAVL G  +P   D+K+IL SVGAE +D +I LLL EVKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPS GGG VAVA+   G  GGG A +AAE KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGA-SAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CcUC02G039680 vs. TAIR 10
Match: AT3G44590.2 (60S acidic ribosomal protein family )

HSP 1 Score: 136.3 bits (342), Expect = 1.5e-32
Identity = 80/115 (69.57%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTNPGLDDVKSILNSVGAEVDDERIGLLLSEVKGKDITELIASGRE 60
           MKV AA+LLAVLGGN NP  D++K I+ +VGA+VD E I LLL EV GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG    A P+ G  GG AAPA   +KKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAPSSG-GGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

The following BLAST results are available for this feature:

BLAST of CcUC02G039680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901119.1	1.5e-45	93.04	60S acidic ribosomal protein P2B-like [Benincasa hispida]	[more]
KAG6570492.1	9.4e-45	91.30	60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7010354.1	9.4e-45	91.30	60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022986046.1	2.7e-44	90.43	60S acidic ribosomal protein P2B-like [Cucurbita maxima]	[more]
XP_022944125.1	2.7e-44	90.43	60S acidic ribosomal protein P2B-like [Cucurbita moschata]	[more]

BLAST of CcUC02G039680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24415	3.2e-35	73.91	60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1	[more]
P46252	3.9e-33	73.91	60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3	[more]
P51407	3.3e-32	71.55	60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 ...	[more]
Q9SLF7	7.3e-32	71.55	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ...	[more]
P41099	1.6e-31	71.30	60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1	[more]

BLAST of CcUC02G039680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J9Z4	1.3e-44	90.43	60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC11148390...	[more]
A0A6J1FYH3	1.3e-44	90.43	60S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A5A7SR49	3.9e-44	88.70	60S acidic ribosomal protein P2B-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3C8T5	3.9e-44	88.70	60S acidic ribosomal protein P2B-like OS=Cucumis melo OX=3656 GN=LOC103497955 PE...	[more]
A0A6J1DJB9	1.1e-43	88.70	60S acidic ribosomal protein P2B-like OS=Momordica charantia OX=3673 GN=LOC11102...	[more]

BLAST of CcUC02G039680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27720.1	2.3e-33	71.55	60S acidic ribosomal protein family	[more]
AT2G27710.1	5.2e-33	71.55	60S acidic ribosomal protein family	[more]
AT2G27710.2	5.2e-33	71.55	60S acidic ribosomal protein family	[more]
AT2G27710.3	5.2e-33	71.55	60S acidic ribosomal protein family	[more]
AT3G44590.2	1.5e-32	69.57	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 18..114 e-value: 1.2E-25 score: 89.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..115
None	No IPR available	PANTHER	PTHR21141:SF83	60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE	coord: 2..115
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..59 e-value: 4.9E-26 score: 92.6
IPR044076	Ribosomal protein P2	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 2..115
IPR044076	Ribosomal protein P2	CDD	cd05833	Ribosomal_P2	coord: 1..115 e-value: 3.79314E-35 score: 114.668
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 2..115 score: 16.862858

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G039680.1	CcUC02G039680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002182	cytoplasmic translational elongation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome