CcUC02G039630 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G039630
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	cytochrome-c oxidases;electron carriers
Location	CicolChr02: 34951276 .. 34952177 (-)
RNA-Seq Expression	CcUC02G039630
Synteny	CcUC02G039630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGTTGCATTTCAAGGCAGTTATAATTCCTTCACTTCTAGAGCTGTCATGATTGCTAGCTTGTTATCAATTTGCCATGTTTATGAGCCTTTATCATTGTACTCAATTGTCTTTGCTTTGGATTTTCTTAAGAGGTTTACTATTTTACAAAAGTTATGGTGCACATCTCAAAAGCATATATTTTTTTTATATATATTGGATGATTTGGGAGCTGAAAGATGTGGGATAGTAAATTCTACAGAATTGGAGTTTGCTAATTTTTTTTTTTTTTTTATTATTATTATTATTATTTTGCTTGAATTATAATGTAGAATGACAGAAGTAGAACAACCTTTTAGACCCCGCGAGAAACTTATTGAGAAGCAAAAATATTTCCAGAGCATCCACAAGCACACTTATCTTAAAGGGCCAATGGACAAAGTCACCTCCGTTGCCATTCCAATTGCTCTTGCAGCTTCATCACTGTATCTTATCGTAAGTTTACCTCTCTCCAGTGCGTTGAAGATTTTCTTGCCCATTTCAGTTAATGTTGAATGATTCGCCTGACTGTGTCGATCTCGTTCATGTCTTTTGTACAGGGACGAGGAATTTATAACATGTCGCACGGGATTGGAAAGAAAGAATGAGGTCACTGTCTTTGCATCTAAATTTCAATGCTTCTAGATCCGTGTGAATTTTGTTCTTGAAGCAATTTTTGTTTAATAAATGCTTAGTTCCAGATTCGGCTACTAGTAGAATACTGGATATAATGCTCAGCTTTCTACTGTGTTTCTCCATATTTGACTGTTTGTCTCGGTTTTCTTTTCTTGAAATTGTGACCCGGAAGATGTATTGGGATCTAGAAATGAAATGGCTGTACCTATTAGAATTGTTGAGAGACATCCAATATTGTCAGCACT

mRNA sequence

ATGCATGTTGCATTTCAAGGCAGTTATAATTCCTTCACTTCTAGAGCTGTCATGATTGCTAGCTTGTTATCAATTTGCCATGTTTATGAGCCTTTATCATTGTACTCAATTGTCTTTGCTTTGGATTTTCTTAAGAGAATGACAGAAGTAGAACAACCTTTTAGACCCCGCGAGAAACTTATTGAGAAGCAAAAATATTTCCAGAGCATCCACAAGCACACTTATCTTAAAGGGCCAATGGACAAAGTCACCTCCGTTGCCATTCCAATTGCTCTTGCAGCTTCATCACTGTATCTTATCGGACGAGGAATTTATAACATGTCGCACGGGATTGGAAAGAAAGAATGAGGTCACTGTCTTTGCATCTAAATTTCAATGCTTCTAGATCCGTGTGAATTTTGTTCTTGAAGCAATTTTTGTTTAATAAATGCTTAGTTCCAGATTCGGCTACTAGTAGAATACTGGATATAATGCTCAGCTTTCTACTGTGTTTCTCCATATTTGACTGTTTGTCTCGGTTTTCTTTTCTTGAAATTGTGACCCGGAAGATGTATTGGGATCTAGAAATGAAATGGCTGTACCTATTAGAATTGTTGAGAGACATCCAATATTGTCAGCACT

Coding sequence (CDS)

ATGCATGTTGCATTTCAAGGCAGTTATAATTCCTTCACTTCTAGAGCTGTCATGATTGCTAGCTTGTTATCAATTTGCCATGTTTATGAGCCTTTATCATTGTACTCAATTGTCTTTGCTTTGGATTTTCTTAAGAGAATGACAGAAGTAGAACAACCTTTTAGACCCCGCGAGAAACTTATTGAGAAGCAAAAATATTTCCAGAGCATCCACAAGCACACTTATCTTAAAGGGCCAATGGACAAAGTCACCTCCGTTGCCATTCCAATTGCTCTTGCAGCTTCATCACTGTATCTTATCGGACGAGGAATTTATAACATGTCGCACGGGATTGGAAAGAAAGAATGA

Protein sequence

MHVAFQGSYNSFTSRAVMIASLLSICHVYEPLSLYSIVFALDFLKRMTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMSHGIGKKE

Homology

[Close]

BLAST of CcUC02G039630 vs. NCBI nr
Match: XP_038900874.1 (uncharacterized protein LOC120087933 [Benincasa hispida])

HSP 1 Score: 140.6 bits (353), Expect = 8.6e-30
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 47  MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 106
           MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 1   MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 60

Query: 107 MSHGIGKKE 116
           MSHGIGKKE
Sbjct: 61  MSHGIGKKE 69

[Close]

BLAST of CcUC02G039630 vs. NCBI nr
Match: XP_008458612.1 (PREDICTED: uncharacterized protein LOC103497961 [Cucumis melo] >XP_008458613.1 PREDICTED: uncharacterized protein LOC103497961 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 4.2e-29
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 47  MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 106
           M EVEQPFRPREKL+EKQKYFQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 1   MAEVEQPFRPREKLVEKQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 60

Query: 107 MSHGIGKKE 116
           MSHGIGKKE
Sbjct: 61  MSHGIGKKE 69

[Close]

BLAST of CcUC02G039630 vs. NCBI nr
Match: XP_004145797.1 (uncharacterized protein LOC101208002 [Cucumis sativus] >XP_004145798.1 uncharacterized protein LOC101208002 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 3.6e-28
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 47  MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 106
           M EVEQPFRPREKL+EKQK FQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 1   MAEVEQPFRPREKLVEKQKIFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 60

Query: 107 MSHGIGKKE 116
           MSHGIGKKE
Sbjct: 61  MSHGIGKKE 69

[Close]

BLAST of CcUC02G039630 vs. NCBI nr
Match: XP_023532621.1 (uncharacterized protein LOC111794729 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.0 bits (336), Expect = 8.0e-28
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 47  MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 106
           M   EQPFRPREKLIEKQKYFQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 1   MDMTEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 60

Query: 107 MSHGIGKKE 116
           MSHGIGKKE
Sbjct: 61  MSHGIGKKE 69

[Close]

BLAST of CcUC02G039630 vs. NCBI nr
Match: XP_038900908.1 (uncharacterized protein LOC120087955 [Benincasa hispida])

HSP 1 Score: 134.0 bits (336), Expect = 8.0e-28
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 47  MTEV-EQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIY 106
           MTEV EQPFRPREKLIE+QKYFQSIHKHTYLKGP+DKVTSVAIPIALAASSLYLIGRGIY
Sbjct: 1   MTEVTEQPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIY 60

Query: 107 NMSHGIGKKE 116
           NMSHGIGKKE
Sbjct: 61  NMSHGIGKKE 70

[Close]

BLAST of CcUC02G039630 vs. ExPASy TrEMBL
Match: A0A1S3C9H3 (uncharacterized protein LOC103497961 OS=Cucumis melo OX=3656 GN=LOC103497961 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.1e-29
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 47  MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 106
           M EVEQPFRPREKL+EKQKYFQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 1   MAEVEQPFRPREKLVEKQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 60

Query: 107 MSHGIGKKE 116
           MSHGIGKKE
Sbjct: 61  MSHGIGKKE 69

[Close]

BLAST of CcUC02G039630 vs. ExPASy TrEMBL
Match: A0A0A0KDL3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G151660 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.7e-28
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 47  MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 106
           M EVEQPFRPREKL+EKQK FQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 1   MAEVEQPFRPREKLVEKQKIFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 60

Query: 107 MSHGIGKKE 116
           MSHGIGKKE
Sbjct: 61  MSHGIGKKE 69

[Close]

BLAST of CcUC02G039630 vs. ExPASy TrEMBL
Match: A0A5A7SQB1 (Histidine-containing phosphotransfer protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00340 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.1e-28
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 47  MTE-VEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIY 106
           MTE +EQPFRPREKLIE+QKYFQSIHKHTYLKGP+DKVTSVAIPIALAASSLYLIGRGIY
Sbjct: 1   MTEAIEQPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIY 60

Query: 107 NMSHGIGKKE 116
           NMSHGIGKKE
Sbjct: 61  NMSHGIGKKE 70

[Close]

BLAST of CcUC02G039630 vs. ExPASy TrEMBL
Match: A0A2H5Q582 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_197260 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.1e-28
Identity = 63/72 (87.50%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 44  LKRMTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRG 103
           ++RM+E E PFRPREKL+EKQK+FQSIHKHTYLKGPMDK+TSVAIPIALAAS+LYLIGRG
Sbjct: 1   MERMSETEVPFRPREKLLEKQKHFQSIHKHTYLKGPMDKITSVAIPIALAASALYLIGRG 60

Query: 104 IYNMSHGIGKKE 116
           IYNMSHGIGKKE
Sbjct: 61  IYNMSHGIGKKE 72

[Close]

BLAST of CcUC02G039630 vs. ExPASy TrEMBL
Match: A0A6J1K8A8 (uncharacterized protein LOC111491558 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491558 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.6e-28
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 47  MTEVEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYN 106
           M   EQPFRPREKLIE+QKYFQSIHKHTYLKGPMDK+TSVAIPIALAASSLYLIGRGIYN
Sbjct: 1   MDMTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYN 60

Query: 107 MSHGIGKKE 116
           MSHGIGKKE
Sbjct: 61  MSHGIGKKE 69

[Close]

BLAST of CcUC02G039630 vs. TAIR 10
Match: AT4G21105.1 (cytochrome-c oxidases;electron carriers )

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-26
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 51  EQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMSHG 110
           E PFRPREKL+EKQ+ FQSI +HTYLKGPMDK+TSVAIPIALAASSLY+IG GIYNMS+G
Sbjct: 4   ETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSVAIPIALAASSLYMIGTGIYNMSNG 63

Query: 111 IGKKE 116
           IGKKE
Sbjct: 64  IGKKE 68

[Close]

BLAST of CcUC02G039630 vs. TAIR 10
Match: AT4G21105.2 (cytochrome-c oxidases;electron carriers )

HSP 1 Score: 68.2 bits (165), Expect = 5.0e-12
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 51 EQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIP 90
          E PFRPREKL+EKQ+ FQSI +HTYLKGPMDK+TS+ IP
Sbjct: 4  ETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSLFIP 42

The following BLAST results are available for this feature:

BLAST of CcUC02G039630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900874.1	8.6e-30	98.55	uncharacterized protein LOC120087933 [Benincasa hispida]	[more]
XP_008458612.1	4.2e-29	95.65	PREDICTED: uncharacterized protein LOC103497961 [Cucumis melo] >XP_008458613.1 P...	[more]
XP_004145797.1	3.6e-28	94.20	uncharacterized protein LOC101208002 [Cucumis sativus] >XP_004145798.1 uncharact...	[more]
XP_023532621.1	8.0e-28	94.20	uncharacterized protein LOC111794729 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_038900908.1	8.0e-28	95.71	uncharacterized protein LOC120087955 [Benincasa hispida]	[more]

BLAST of CcUC02G039630 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G039630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C9H3	2.1e-29	95.65	uncharacterized protein LOC103497961 OS=Cucumis melo OX=3656 GN=LOC103497961 PE=...	[more]
A0A0A0KDL3	1.7e-28	94.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G151660 PE=4 SV=1	[more]
A0A5A7SQB1	5.1e-28	94.29	Histidine-containing phosphotransfer protein 1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A2H5Q582	5.1e-28	87.50	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_197260 PE=4 SV=1	[more]
A0A6J1K8A8	8.6e-28	92.75	uncharacterized protein LOC111491558 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CcUC02G039630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21105.1	2.1e-26	84.62	cytochrome-c oxidases;electron carriers	[more]
AT4G21105.2	5.0e-12	76.92	cytochrome-c oxidases;electron carriers	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039297	Cytochrome c oxidase subunit VII	PFAM	PF02238	COX7a	coord: 58..110 e-value: 6.0E-16 score: 58.6
IPR039296	Predicted cytochrome c oxidase subunit VII	PANTHER	PTHR35308	CYTOCHROME C OXIDASE SUBUNIT 7	coord: 36..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G039630.1	CcUC02G039630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane