CcUC02G038730 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G038730
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DNA polymerase epsilon subunit C
Location	CicolChr02: 34120650 .. 34127139 (-)
RNA-Seq Expression	CcUC02G038730
Synteny	CcUC02G038730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTGAAAGATACAATACAATTTGCCCAAAAGGGCCATTTTATGAGCCGCCCGCCTTTGGTGCAGCCAGGCTTTTCCAATTACGGCCACTCGAAATGAGAGGTTCGAAGTGTTCAATCAACATACGCTTCTGATTCTCTCTCAATCGCTCCCATTCCCTGCTTTTCTTGCTTCGCCGGAGCCGGAGTTAGCGGTTCCTAGGGCTACTGAACACTCCAATTCACTACCATGGCGATCGTCGGCGTTCTAGCTTTGCAGGGATCTTTTAACGAGCACATCGCAGGCATATTCTTCTTCGCTATCTCTACCTCGTTTTGTAGTAGGCGTTTCTGTGGATGATTATCTTTTGTTGTTTTTATTTTGGCGCGCAGCTTTGAGAAGGCTTGGAGTGAAGGGCGTAGAGATAAGGAAGCCTGAGCAGCTTCTTAATGTAGCTTCTCTGATTATTCCTGGCGGGGAAAGCACCACCATGGCTAAACTAGCGGAGCTCCATAATTTGGTTTGTTCCTCTTTCCTCTAGATGTTGCTTCGATAATTTCATAAAAACTAACACAGGAACAGGCGCAAAAGTTGAAACGTCTTGCATTAAATCGTTTAATTAGCACAAATGTAATCTTTAAAACTTGTTGTGAAACTGCTCGATTCTATTGAACCCGCCAAAGCTGCTTAGACATCTCAACTTTAGGAAATAATCATGTAGCTTAGAATTAGATCGAGTGTAGTATTTATCTTGTCGTATTTTTGTATATTTTATAGTTTCCTGCTTTGCGAGAGTTCGTTAGAATGGGGAAGCCTGTCTGGGGCACCTGTGCAGGGCTCATCTTTTTGGCAAACAAGGCTATTGGTAGATTTCCTTCCTTTTTTTTTCCCCTCAACATCTCAACTTTCGGATGTTTTCTTTCCCAAACCCCGCCTCCAACACATCAATACAATGCTTGAAACGTGTTCTAAACTTGATATGGATACGTATATTTACAGGACAGAAAACTGGTGGACAGGGACTTGTTGGAGGCCTGGATTGTACTGTTCATAGGAACTTCTTTGGCAGTCAGGTAACTCTCGTTGGTTTCTCATGTTGGGTTGTGACTGTGATTATCAAGATGCATGAGAATAACTGGAGAACTAAAGAAACTTGTCAATTGGCGCCAAACGTGTTTAGGAATCAAATTTGCAAATTTTCATAAGGCTATGTCTGCTCGTGTGGTGGTAGCAGACATGAAATTTTCCCTTTCAGTCATCCTACGAATTGAATAAGCTTCTGAAGTTCTTTTGAACCATAGCATGTTGGAAAAATATAGCCACAAAGAATCTGGGGAGCTAAGATCCTCGTTAATGGCAATTGCGGTCCTCTAGGATTTTTGAACTATGCTATTTTAGAATCCATTATGCCTGTTGGCTCAAATAATGGCTTTTTCCCGATGAGAATTTCTATACTTGTTTAGGGGTAATTGCACTGGATTGCACTTTTAGGAATAATAATAAAGTGTATAGCAACATTTTAAAAAATTACAAATATAGCAAAATCTATAAATGATAGACTGATAGATTTCTGTCTGTAATATGGTTTATCACTGATAGACCCCACTATTAATATGATCTATCACTGAAAGATTTTGAAACCAAAATCTAAATTTTGCTATATTTGCAAATACTTTAAACTTGATTGTTGTATTTGCAACTGTCCCTTAATTTAATATCCTCCATATAGTCAGCAGCATCATGAGATCTGCTTAAATGAAGTTTTAGTTGGAACATGGAGTTCAGAATGCAGAATCCTGATGGTTTTGTGTGTACACAAGCTGATTATCAAAAGAAATTCTGCTTAGATGTTGATTCCAAATGCTCTGTTTTTCCCCAAACTACATATGACCAGTATTACTAAGAAGTATAGCAAGCCTGCGTAACTTAAGATCGAAGTTTGCTTTATATTCACTGTCCATTTCTCAAGTTCAAATTTTTTCTAATTGAGAAGATCATGATTGTCTAGCTTCAAAGCTTTGAGGCAGAGCTCTCGATACCAGAGCTAGTATCTACCGAAGGTGGTCCGGAAACATTTCGTGGAGTCTTCATCCGAGCTCCTGCAATTCTTGATGTGGGACCAGAAGTCCAAGTACTGGCTCACTGCCTTGTCTCTTCAAACTCCAACTTGCATTCAAATTCCCCTGGTGAAGGCAAAGAGGTTTGTTGTTATTTTCTTCTGCTCTCAGAGATCTCATATCATCTATGCACTGCCAGTGCTCTATTTTGAACACCTAAATTATTGTAATCTGTATGTATGAACCAGAAGCTTCAAACTGTATGTATGTCGGTTGTGCGATCATTCATTAAATTATAGTTTAGCTGGCATACTGGAGTTTGCTCTTGTCTTGCGTTTGCTTTCCTCCCCCCCTTCACATTGTGGTTTGAATATCTCAGGAAAAAGGTTCAGAAAGTAAAGTGATTGTAGCAGTGAGGCAAGGGAACTTGCTCGCAACTGCCTTCCATCCTGAATTAACATCAGATAATAGATGGTATGTTGTAGTTTTAACTTGAAATATTACACAGCATATTGTGGTGATCATCTCAAGCGAGTTACAACGATGGTTTATGCAGGCACAGTTACTTCCTGAAGATGGCCGGCGATGTTGAAGAATCCTCTAGTAGCATAGCAAGCATAGGAGTTGACAATTCGAGATTCGAAAGATCGAAGACCGACCTTCCGATTTTTCTTTAGTTTAAACCAAATGAACCCCTCCTCAACCCAAACTACATTTTCAAAGTTTCATTCTAGGTTTAATCTATCTATTCTGCAGTTTGCACCATGTTTTTTCTTCCTTATGTTAAGTTACAATATTCTTCTGCTGTATTAATTTCATTTTGCTCGCACTCTGTGTAGGAGATGCTGTACATGGAGTTTAATTTGAAAAGAACCATCTCCTTTTGCCCTGGATTAATCATTGTTGGAAAACAAACTGCAGTGTAAAGAATTCAAAGTTGTTAGGCTACCAAGAATTTAATATTTCCTATTATTTTGAATACTTACGGATTTGACTGTGTTTTTTCCTTTAAATGTAACTATTAACTAACATGCTGATCTGAACAAATTGCCACCGATTAAGTTGTTTTCTGAATTTGAAAACTAGGGACATGATAAATTAGAAAGGAAATGGGGGTTTTAAATACAAATTATTCTAGAAGAGAAACTATTTACTATTTACCTGCCCAATAAAAGTCACGTTTCCTATATATTTACTTACTTTTCAGAATATATTTTAGGTCAAATTATAAAAAATGTTCTTGAATTTTGTCATTTATTTAAAAAATGTCTATAAATCTTAATTTCTAAAACGTCGTGTATTACTCGAATTCATAACCATGGTAAAACTTAGAATAACATGAATAGCTAGAGAAAACAAAACTTACTTTATAATTAGGAAAATGATACATTTTAATAATTCAATTAAAAAAATATTGGAATCTCTCTTCCCGGTTGATTAAAAGAAAAAAAAAAGACGAAATTATAATTGCAATTAAAAAAAAATAACCTTACTTAATATACTTTTTTTTTTTTCGGAAAATCCGAGATTCTCAGGCAGTGTATGGGCCACCGAATAGGCCCAATGAAGGGCCCAAAATGGCAAAGACACCGTAAAATCCGTGGAGAAAAAGGACCCAAATTTCCCCCAAGTTCAGAAACAACCGAACCTTAACAATGGCTTCATCCAAAAAGTCAAGTATTGCTACTGAAGCCAAGAGCAAAGAAGCGGGAACCTCCAAGCCAGCCCCCAAAACCAAGACCCACAACAATGCCAGAAAATCCGACAACGATGATTCAAAGAAGAAGAAGAAGAAGAAGAAGAAGATTACCACCAACAATGGCTCCGTCAAGGACAACGAGGCCTTAGCTATTTCTGCTCCAGGAGGCTCAGCCTCTGAGGAGGACGATGCCGATGAACACAGAGCCGAAACCACAAGTAAAAAACCTAACGCCTCGAAATCGAAGAAAGTTAAACGGAACCATGCCAAGAAAGAAGAGAATGGTTATGCTGCCGAAGAAGAAGAAGCCGAGGAGAAGATTTGTAAATTCCCCATGCATCGGATCAAGAAAATCATGAGGGACGAAAATTCTGATTTGCGTATCAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGTAAGCCCTTAAACACCACCACAAACGCACGAACCCTAAATTGCTCAATTTTAGCTCCATTTAAGGATTAGTTTTTTCTCGTAGGGTATTATTTGGTTCTAAAGTGGGGTTTTTCTGTGTCCACAAACTTCTTAATTGTTGCAGGAGATGTTTCTCGTACAATTTTGTAAAGATGCATATGCGTGCTGTGCTGAGGATCGTAAGAAGTCTCTTGCTTACAAGCATCTATGTAATGTTCCTATTCTCTATTTTGATGCTGCTGTCTATTTTCATTGGTTGTTATAGCGCACCCATATATCATTTTCCATGTTTATTTGCATCTCTGGCATGGACTCTTTGCCCTTCTTGTCTAGCCTTCTAAAATGGAAGTTAGAATTGTGAATTTTATTTCAAACGCAATTATATTTTAAACAATGTTAAAACTTGGACCTGAAATCAGTTGATAGGATTCCAGTTCCACTATCATATGGCCATCATGACAGGGATTTACCTTTTTATGTGTTGAACCGTTTCAACATATGCTCCTTGCGATACCAGATTTAAGAATGATCGATTTTCCTCTTTCTGTATACATGCTGCAAAATGAATAACAGCATGATGGTCATCTACTTAGCAGTGACAAGGAAGATATGATGATCTTGATCGTGGTCATAGTTTAACTTTAACATGGATTGTGACCTTAGATTTAGGTTGCTCCAATTACTGGCTAAACGGACATGAATTATACTAATGCGTTGTGGAGGATTACTGATTTGTGTTATCTGCACATTGCTTTATGCTATCAAAGAGAATTTCTACCGCGGCTGAAAGCTTTAGGTAAATCCCATCACTAAACCATGTCTGGCTGGATGATTTACTCACCCAAATTATTTGCATGTATGAGGAGGAAGAATAAAGAACCAGTGGAAGGAAAGTTTGTAAAATCCGATACTTGAAATGGGTCTAAGTTGGTTGGGGAGGGGGACTGAAACTGTTATCAGGATTCCTTCTTTTGGACAACTTTAAGTTAGCTGGTCAAGGGGACAGAAAGTGAGAGATTTGGAGAAGTACGTATTTAGGAGTCGACAATGGGGAAGCAGTGTGAATCTAGTATGAAATTTCAATTTGGATTAGGAGAGAAGGAAAACTCACGGAACTCTTCCTTGGTTTTGTTCTGTTATCCACTAATAGAAAGCAAATTCAAATATCTCTGATCTGGCTAGGCGATTTTATCAAGATGATGCCGAAACTTTAATAAGCCTTCCGTTTTGCTTATTGTTTCATTTTATCTCATATTGCTAATAATTTCACTTGTGAGAACTCTGAGGATGCTTCTTTTATTTATTGACCACATTTTGATGGTGGGAAATAAGGGGGCTGGGGGTTCAGAAAAGAAAAGACCTTTTCTTCTATCTCAACCAGAGTAACCTATCTGGTTAAGAAAATTTGAATGTCAGAACTGATAGTTTCAAAGCCCGCTCTCTTCTATTAAAATTGGGAGAGGAAAAAGAAGTTCGAAATTACTGGGAAGCATGTACGTGTTGAGATGTTTATTATTTATCGTCCATTTGTTGTGTTTCTTGGTTGAGCATCATTGAATTTCTATATATGTACAGTTTCAACATGTTCAACTCAAATGTATTTTCTGAAACTGCCAAAGTGAGCTTAGGTGCGGTAATTGACATATACCTTTTCTTTTGAGGTTGGAGGTTCGATTACCTATCTCCATAATTGTTGTACGGAAGAAATATATGCATCATAATATCATGATAGACCAATGATTATTCTGCTTTATAATTGAAACCTTAGAATTTGCTTCCTTTCAACTACCAAAGCATTGTTTTAGATGTAAGATTTTATTCGAAGTAGTAGTGAGATTCTCCTTTGTTGTTGCAGCATCAGTAGTCGGCAAAAGGAAGAGATACGACTTTCTTTCAGGTACATACACATTGCCTATTACATTATGCTCTCTACTACTGCCATTGCCATTATTAGAAAGATGATTTGTCGTCTCTAAACTGATAGACGCCTTCTAAAACGTCAAATTTTTATTTTTATCATCCCCAGATTTTGTTCCAGAGAAATTAAAATTCGAAGATGCGTTAAAGCAAAGAAGCATGGCAGAATCAGGGAAAGATTAGGTTTCTTTGTCTTTTAATTTGAACACTTCATATTGTTCTTTGGATGTGTAATACTTAGGCATCTTTCTTCTCATGTCAATGGGAATCCAAGGAAGTTAGATACAAACAACATACACTTTTTTCCTCCGTACAGTTCTGTAAGTTTATTAACGACATCTCAAATCTAACATCCATTCTAACATCATTTTATTTTTTAAAAAATGTGTTCTTATAT

mRNA sequence

TTTTTGAAAGATACAATACAATTTGCCCAAAAGGGCCATTTTATGAGCCGCCCGCCTTTGGTGCAGCCAGGCTTTTCCAATTACGGCCACTCGAAATGAGAGGTTCGAAGTGTTCAATCAACATACGCTTCTGATTCTCTCTCAATCGCTCCCATTCCCTGCTTTTCTTGCTTCGCCGGAGCCGGAGTTAGCGGTTCCTAGGGCTACTGAACACTCCAATTCACTACCATGGCGATCGTCGGCGTTCTAGCTTTGCAGGGATCTTTTAACGAGCACATCGCAGGCATATTCTTCTTCGCTATCTCTACCTCGTTTTGTAGTAGGCGTTTCTGTGGATGATTATCTTTTGTTGTTTTTATTTTGGCGCGCAGCTTTGAGAAGGCTTGGAGTGAAGGGCGTAGAGATAAGGAAGCCTGAGCAGCTTCTTAATGTAGCTTCTCTGATTATTCCTGGCGGGGAAAGCACCACCATGGCTAAACTAGCGGAGCTCCATAATTTGTTTCCTGCTTTGCGAGAGTTCGTTAGAATGGGGAAGCCTGTCTGGGGCACCTGTGCAGGGCTCATCTTTTTGGCAAACAAGGCTATTGGACAGAAAACTGGTGGACAGGGACTTGTTGGAGGCCTGGATTGTACTGTTCATAGGAACTTCTTTGGCAGTCAGCTTCAAAGCTTTGAGGCAGAGCTCTCGATACCAGAGCTAGTATCTACCGAAGGTGGTCCGGAAACATTTCGTGGAGTCTTCATCCGAGCTCCTGCAATTCTTGATGTGGGACCAGAAGTCCAAGTACTGGCTCACTGCCTTGTCTCTTCAAACTCCAACTTGCATTCAAATTCCCCTGGTGAAGGCAAAGAGGAAAAAGGTTCAGAAAGTAAAGTGATTGTAGCAGTGAGGCAAGGGAACTTGCTCGCAACTGCCTTCCATCCTGAATTAACATCAGATAATAGATGGCACAGTTACTTCCTGAAGATGGCCGGCGATGTTGAAGAATCCTCTAGTAGCATAGCAAGCATAGGAGTTGACAATTCGAGATTCGAAAGATCGAAGACCGACCTTCCGATTTTTCTTTAGTTTAAACCAAATGAACCCCTCCTCAACCCAAACTACATTTTCAAAGTTTCATTCTAGGTTTAATCTATCTATTCTGCAGTTTGCACCATGTTTTTTCTTCCTTATGTTAAGTTACAATATTCTTCTGCTGTATTAATTTCATTTTGCTCGCACTCTGTGTAGGAGATGCTGTACATGGAGTTTAATTTGAAAAGAACCATCTCCTTTTGCCCTGGATTAATCATTGTTGGAAAACAAACTGCAGTGTAAAGAATTCAAAGTTGTTAGGCTACCAAGAATTTAATATTTCCTATTATTTTGAATACTTACGGATTTGACTGTGTTTTTTCCTTTAAATGTAACTATTAACTAACATGCTGATCTGAACAAATTGCCACCGATTAAGTTGTTTTCTGAATTTGAAAACTAGGGACATGATAAATTAGAAAGGAAATGGGGGTTTTAAATACAAATTATTCTAGAAGAGAAACTATTTACTATTTACCTGCCCAATAAAAGTCACGTTTCCTATATATTTACTTACTTTTCAGAATATATTTTAGGTCAAATTATAAAAAATGTTCTTGAATTTTGTCATTTATTTAAAAAATGTCTATAAATCTTAATTTCTAAAACGTCGTGTATTACTCGAATTCATAACCATGGTAAAACTTAGAATAACATGAATAGCTAGAGAAAACAAAACTTACTTTATAATTAGGAAAATGATACATTTTAATAATTCAATTAAAAAAATATTGGAATCTCTCTTCCCGGTTGATTAAAAGAAAAAAAAAAGACGAAATTATAATTGCAATTAAAAAAAAATAACCTTACTTAATATACTTTTTTTTTTTTCGGAAAATCCGAGATTCTCAGGCAGTGTATGGGCCACCGAATAGGCCCAATGAAGGGCCCAAAATGGCAAAGACACCGTAAAATCCGTGGAGAAAAAGGACCCAAATTTCCCCCAAGTTCAGAAACAACCGAACCTTAACAATGGCTTCATCCAAAAAGTCAAGTATTGCTACTGAAGCCAAGAGCAAAGAAGCGGGAACCTCCAAGCCAGCCCCCAAAACCAAGACCCACAACAATGCCAGAAAATCCGACAACGATGATTCAAAGAAGAAGAAGAAGAAGAAGAAGAAGATTACCACCAACAATGGCTCCGTCAAGGACAACGAGGCCTTAGCTATTTCTGCTCCAGGAGGCTCAGCCTCTGAGGAGGACGATGCCGATGAACACAGAGCCGAAACCACAAGTAAAAAACCTAACGCCTCGAAATCGAAGAAAGTTAAACGGAACCATGCCAAGAAAGAAGAGAATGGTTATGCTGCCGAAGAAGAAGAAGCCGAGGAGAAGATTTGTAAATTCCCCATGCATCGGATCAAGAAAATCATGAGGGACGAAAATTCTGATTTGCGTATCAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGAGATGTTTCTCGTACAATTTTGTAAAGATGCATATGCGTGCTGTGCTGAGGATCGTAAGAAGTCTCTTGCTTACAAGCATCTATCATCAGTAGTCGGCAAAAGGAAGAGATACGACTTTCTTTCAGATTTTGTTCCAGAGAAATTAAAATTCGAAGATGCGTTAAAGCAAAGAAGCATGGCAGAATCAGGGAAAGATTAGGTTTCTTTGTCTTTTAATTTGAACACTTCATATTGTTCTTTGGATGTGTAATACTTAGGCATCTTTCTTCTCATGTCAATGGGAATCCAAGGAAGTTAGATACAAACAACATACACTTTTTTCCTCCGTACAGTTCTGTAAGTTTATTAACGACATCTCAAATCTAACATCCATTCTAACATCATTTTATTTTTTAAAAAATGTGTTCTTATAT

Coding sequence (CDS)

ATGGCTTCATCCAAAAAGTCAAGTATTGCTACTGAAGCCAAGAGCAAAGAAGCGGGAACCTCCAAGCCAGCCCCCAAAACCAAGACCCACAACAATGCCAGAAAATCCGACAACGATGATTCAAAGAAGAAGAAGAAGAAGAAGAAGAAGATTACCACCAACAATGGCTCCGTCAAGGACAACGAGGCCTTAGCTATTTCTGCTCCAGGAGGCTCAGCCTCTGAGGAGGACGATGCCGATGAACACAGAGCCGAAACCACAAGTAAAAAACCTAACGCCTCGAAATCGAAGAAAGTTAAACGGAACCATGCCAAGAAAGAAGAGAATGGTTATGCTGCCGAAGAAGAAGAAGCCGAGGAGAAGATTTGTAAATTCCCCATGCATCGGATCAAGAAAATCATGAGGGACGAAAATTCTGATTTGCGTATCAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGAGATGTTTCTCGTACAATTTTGTAAAGATGCATATGCGTGCTGTGCTGAGGATCGTAAGAAGTCTCTTGCTTACAAGCATCTATCATCAGTAGTCGGCAAAAGGAAGAGATACGACTTTCTTTCAGATTTTGTTCCAGAGAAATTAAAATTCGAAGATGCGTTAAAGCAAAGAAGCATGGCAGAATCAGGGAAAGATTAG

Protein sequence

MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKKKKKKKITTNNGSVKDNEALAISAPGGSASEEDDADEHRAETTSKKPNASKSKKVKRNHAKKEENGYAAEEEEAEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAEDRKKSLAYKHLSSVVGKRKRYDFLSDFVPEKLKFEDALKQRSMAESGKD

Homology

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BLAST of CcUC02G038730 vs. NCBI nr
Match: XP_038902902.1 (DNA polymerase epsilon subunit C [Benincasa hispida])

HSP 1 Score: 343.2 bits (879), Expect = 1.7e-90
Identity = 200/223 (89.69%), Postives = 205/223 (91.93%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKKKKKKKITTNNGSVKD 60
           MASSKKSS  TEAKSKEAGTSKP PKTKTHNNARKSD DDS KKKKKKKKI+T NGSVKD
Sbjct: 44  MASSKKSS--TEAKSKEAGTSKPTPKTKTHNNARKSDKDDSNKKKKKKKKISTINGSVKD 103

Query: 61  NEALAISAPG-GSASEEDDADEHRAETTSKKPNASKSKKVKRNHAKKEENGYAA-EEEEA 120
           NEALA S PG  SASEE DADE RAETTS KPN SKSKKV+RNH KKEENGYAA EEEEA
Sbjct: 104 NEALATSPPGSASASEEVDADEDRAETTSGKPNTSKSKKVQRNHVKKEENGYAAEEEEEA 163

Query: 121 EEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAEDRKKSL 180
           EEKI KFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCA+DRKKSL
Sbjct: 164 EEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSL 223

Query: 181 AYKHLSSVVGKRKRYDFLSDFVPEKLKFEDALKQRSMAESGKD 222
           AYKHLSSVV KRKRYDFLSDFVPEKLKFEDALK+R+MAESGKD
Sbjct: 224 AYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERNMAESGKD 264

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BLAST of CcUC02G038730 vs. NCBI nr
Match: XP_008463933.1 (PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo])

HSP 1 Score: 333.2 bits (853), Expect = 1.7e-87
Identity = 194/224 (86.61%), Postives = 204/224 (91.07%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKKKKKK-KITTNNGSVK 60
           MASSKKSS  TEAK KEAGTSKPAPK KTHNNAR SD + SKKKKKKKK  I+TNNGSVK
Sbjct: 1   MASSKKSS--TEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVK 60

Query: 61  DNEALAISAPGGSASEEDD-ADEHRAETTSKKPNASKSKKVKRNHAKKEENGYA-AEEEE 120
           DNE LA+S PGGSASE+DD ADE +AETTS+K   SKSKKVKRNHAK+E+NGYA  EEEE
Sbjct: 61  DNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120

Query: 121 AEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAEDRKKS 180
           AEEKI KFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCA+DRKKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLSSVVGKRKRYDFLSDFVPEKLKFEDALKQRSMAESGKD 222
           LAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALK+RSMAESGKD
Sbjct: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

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BLAST of CcUC02G038730 vs. NCBI nr
Match: XP_004149539.2 (chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 328.9 bits (842), Expect = 3.3e-86
Identity = 193/225 (85.78%), Postives = 203/225 (90.22%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKKKKKK---KITTNNGS 60
           MASSKKSS  TEAKSKE GTSKP+PK KTHNNAR SD D SKKKKKKKK    I+TNNGS
Sbjct: 1   MASSKKSS--TEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGS 60

Query: 61  VKDNEALAISAPGGSASEE-DDADEHRAETTSKKPNASKSKKVKRNHAKKEENGYAAEEE 120
           VKDN ALA+SAPG SASE+ D ADE +AETTS+K N SKSKKVKRNHAK+E+N YAA EE
Sbjct: 61  VKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYAA-EE 120

Query: 121 EAEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAEDRKK 180
           EAEEKI KFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCA+DRKK
Sbjct: 121 EAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKK 180

Query: 181 SLAYKHLSSVVGKRKRYDFLSDFVPEKLKFEDALKQRSMAESGKD 222
           SLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALK+RSMAESGKD
Sbjct: 181 SLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

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BLAST of CcUC02G038730 vs. NCBI nr
Match: XP_022986059.1 (DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 295.4 bits (755), Expect = 4.0e-76
Identity = 180/237 (75.95%), Postives = 193/237 (81.43%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKK--KKKKKITTN---- 60
           MASSKKSS  +EAKSKEAGTSKPAPK KTHNN   ++N+  K  K   KKKK+++N    
Sbjct: 1   MASSKKSS--SEAKSKEAGTSKPAPKNKTHNNNNNNNNNARKVDKVYSKKKKVSSNNNKH 60

Query: 61  --NGSVKDNEALAISAPGGSASEEDDADEHRAETTSKKPNASKSKKVKRNHAKKEENGYA 120
             NGSVK+NE L ISAPG       DA+E R ETTSK PN SKSKKVKRNH KKEENGYA
Sbjct: 61  TSNGSVKENEVLPISAPG-------DAEEDRVETTSKSPNTSKSKKVKRNHGKKEENGYA 120

Query: 121 AE--------EEEAEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCK 180
            E        EEEAEEKI KFPM+RIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCK
Sbjct: 121 EEEEEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCK 180

Query: 181 DAYACCAEDRKKSLAYKHLSSVVGKRKRYDFLSDFVPEKLKFEDALKQRSMAESGKD 222
           DAYACCA+DRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALK+RSMAESGKD
Sbjct: 181 DAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 228

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BLAST of CcUC02G038730 vs. NCBI nr
Match: KAG7010622.1 (Chromatin accessibility complex protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 293.9 bits (751), Expect = 1.2e-75
Identity = 179/233 (76.82%), Postives = 189/233 (81.12%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTH-NNARKSDNDDSKKKKKKKKKITTNNGSVK 60
           MASSKKSS  +EAKS+EAGTSKPAPK KTH NNAR  D   SKKKK       T+NGSVK
Sbjct: 1   MASSKKSS--SEAKSREAGTSKPAPKNKTHNNNARTIDKVYSKKKKVSNNNKHTSNGSVK 60

Query: 61  DNEALAISAPGGSASEEDDADEHRAETTSKKPNASKSKKVKRNHAKKEENGYAAE----- 120
           +NE L ISAPG       DA+E RAETTSK PN SKSKKVKRNH KKE+NGY  E     
Sbjct: 61  ENEVLPISAPG-------DAEEDRAETTSKSPNTSKSKKVKRNHGKKEQNGYVEEEEEEE 120

Query: 121 ------EEEAEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYA 180
                 EEEAEEKI KFPM+RIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKDAYA
Sbjct: 121 EEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYA 180

Query: 181 CCAEDRKKSLAYKHLSSVVGKRKRYDFLSDFVPEKLKFEDALKQRSMAESGKD 222
           CCA+DRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALK+RSMAESGKD
Sbjct: 181 CCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 224

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BLAST of CcUC02G038730 vs. ExPASy Swiss-Prot
Match: Q9V452 (Chromatin accessibility complex 16kD protein OS=Drosophila melanogaster OX=7227 GN=Chrac-16 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.5e-06
Identity = 34/100 (34.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 126 PMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAEDRK-KSLAYKHLS 185
           P+ R++ IM+       I  E LFL+ K +E+F+      AY      R  ++L Y+HLS
Sbjct: 21  PLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLS 80

Query: 186 SVVGKRKRYDFLSDFVPEKLK---FEDALKQRSMAESGKD 222
            VV K K  +FL   VP+K++   F++ L+    A S  D
Sbjct: 81  QVVNKNKNLEFLLQIVPQKIRVHQFQEMLRLNRSAGSDDD 120

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BLAST of CcUC02G038730 vs. ExPASy Swiss-Prot
Match: Q9NRG0 (Chromatin accessibility complex protein 1 OS=Homo sapiens OX=9606 GN=CHRAC1 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.9e-06
Identity = 32/107 (29.91%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 114 EEEEAEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAED 173
           +++  E+++   P+ RI+ IM+       INQEAL L  KA+E+F+      +Y   +  
Sbjct: 8   KDKGGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGK 67

Query: 174 RKKSLAYKHLSSVVGKRKRYDFLSDFVPEKL---KFEDALKQRSMAE 218
            KK L Y  L++   + + + FL+D +P+K+   K+   LK+    E
Sbjct: 68  EKKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREE 114

[Close]

BLAST of CcUC02G038730 vs. ExPASy Swiss-Prot
Match: Q9JKP8 (Chromatin accessibility complex protein 1 OS=Mus musculus OX=10090 GN=Chrac1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.7e-06
Identity = 33/111 (29.73%), Postives = 58/111 (52.25%), Query Frame = 0


Query: 114 EEEEAEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAED 173
           +E+  ++++   P+ RI+ IM+       INQEAL L  KA+E+F+      +Y   +  
Sbjct: 8   KEKCGDQRLVSLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYRHGSGK 67

Query: 174 RKKSLAYKHLSSVVGKRKRYDFLSDFVPEKL---KFEDALKQRSMAESGKD 222
            KK+L Y  L+S     +   FL+D +P+K+   K+   LK++   E   +
Sbjct: 68  AKKALTYSDLASTAEDSETLQFLADILPKKILASKYLKMLKEKREEEEDNE 118

[Close]

BLAST of CcUC02G038730 vs. ExPASy Swiss-Prot
Match: P79007 (Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=hap5 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.5e-04
Identity = 27/89 (30.34%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 114 EEEEAEEKICKFPMHRIKKIMR--DENSDLRINQEALFLVNKASEMFLVQFCKDAYACCA 173
           E ++   K    P+ RIKK+M+  D+  +  I+ EA FL  K SE+F+ +    A+    
Sbjct: 98  EHDDQAVKTLHLPLARIKKVMKTDDDVKNKMISAEAPFLFAKGSEIFIAELTMRAWLHAK 157

Query: 174 EDRKKSLAYKHLSSVVGKRKRYDFLSDFV 201
           ++++++L    +++ V K + YDFL D +
Sbjct: 158 KNQRRTLQRSDIANAVSKSEMYDFLIDII 186

[Close]

BLAST of CcUC02G038730 vs. ExPASy TrEMBL
Match: A0A1S3CKU7 (DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 8.4e-88
Identity = 194/224 (86.61%), Postives = 204/224 (91.07%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKKKKKK-KITTNNGSVK 60
           MASSKKSS  TEAK KEAGTSKPAPK KTHNNAR SD + SKKKKKKKK  I+TNNGSVK
Sbjct: 1   MASSKKSS--TEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVK 60

Query: 61  DNEALAISAPGGSASEEDD-ADEHRAETTSKKPNASKSKKVKRNHAKKEENGYA-AEEEE 120
           DNE LA+S PGGSASE+DD ADE +AETTS+K   SKSKKVKRNHAK+E+NGYA  EEEE
Sbjct: 61  DNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120

Query: 121 AEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAEDRKKS 180
           AEEKI KFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCA+DRKKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLSSVVGKRKRYDFLSDFVPEKLKFEDALKQRSMAESGKD 222
           LAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALK+RSMAESGKD
Sbjct: 181 LAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of CcUC02G038730 vs. ExPASy TrEMBL
Match: A0A0A0KCQ2 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G294440 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.6e-86
Identity = 193/225 (85.78%), Postives = 203/225 (90.22%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKKKKKK---KITTNNGS 60
           MASSKKSS  TEAKSKE GTSKP+PK KTHNNAR SD D SKKKKKKKK    I+TNNGS
Sbjct: 1   MASSKKSS--TEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGS 60

Query: 61  VKDNEALAISAPGGSASEE-DDADEHRAETTSKKPNASKSKKVKRNHAKKEENGYAAEEE 120
           VKDN ALA+SAPG SASE+ D ADE +AETTS+K N SKSKKVKRNHAK+E+N YAA EE
Sbjct: 61  VKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYAA-EE 120

Query: 121 EAEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAEDRKK 180
           EAEEKI KFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCA+DRKK
Sbjct: 121 EAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKK 180

Query: 181 SLAYKHLSSVVGKRKRYDFLSDFVPEKLKFEDALKQRSMAESGKD 222
           SLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALK+RSMAESGKD
Sbjct: 181 SLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of CcUC02G038730 vs. ExPASy TrEMBL
Match: A0A6J1JF10 (DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483919 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.9e-76
Identity = 180/237 (75.95%), Postives = 193/237 (81.43%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTHNNARKSDNDDSKKKK--KKKKKITTN---- 60
           MASSKKSS  +EAKSKEAGTSKPAPK KTHNN   ++N+  K  K   KKKK+++N    
Sbjct: 1   MASSKKSS--SEAKSKEAGTSKPAPKNKTHNNNNNNNNNARKVDKVYSKKKKVSSNNNKH 60

Query: 61  --NGSVKDNEALAISAPGGSASEEDDADEHRAETTSKKPNASKSKKVKRNHAKKEENGYA 120
             NGSVK+NE L ISAPG       DA+E R ETTSK PN SKSKKVKRNH KKEENGYA
Sbjct: 61  TSNGSVKENEVLPISAPG-------DAEEDRVETTSKSPNTSKSKKVKRNHGKKEENGYA 120

Query: 121 AE--------EEEAEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCK 180
            E        EEEAEEKI KFPM+RIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCK
Sbjct: 121 EEEEEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCK 180

Query: 181 DAYACCAEDRKKSLAYKHLSSVVGKRKRYDFLSDFVPEKLKFEDALKQRSMAESGKD 222
           DAYACCA+DRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALK+RSMAESGKD
Sbjct: 181 DAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 228

[Close]

BLAST of CcUC02G038730 vs. ExPASy TrEMBL
Match: A0A6J1FVY8 (DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448974 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.3e-75
Identity = 178/226 (78.76%), Postives = 187/226 (82.74%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPAPKTKTH-NNARKSDNDDSKKKKKKKKKITTNNGSVK 60
           MASSKKSS  +EAKSKEAGTSKPAP  KTH NNAR  D   SKKKK       T+NGSVK
Sbjct: 1   MASSKKSS--SEAKSKEAGTSKPAPNNKTHNNNARTIDKVYSKKKKVSNSNKHTSNGSVK 60

Query: 61  DNEALAISAPGGSASEEDDADEHRAETTSKKPNASKSKKVKRNHAKKEENGYAAE----E 120
           +NE L ISAPG       DA+E RAETTSK PN SKSKKVKRN  KKE+NGY  E    E
Sbjct: 61  ENEVLPISAPG-------DAEEDRAETTSKSPNTSKSKKVKRNRGKKEQNGYVEEEEEAE 120

Query: 121 EEAEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAEDRK 180
           EEAEEKI KFPM+RIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKDAYACCA+DRK
Sbjct: 121 EEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRK 180

Query: 181 KSLAYKHLSSVVGKRKRYDFLSDFVPEKLKFEDALKQRSMAESGKD 222
           KSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALK+RSMAESGKD
Sbjct: 181 KSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 217

[Close]

BLAST of CcUC02G038730 vs. ExPASy TrEMBL
Match: A0A6J1CGZ0 (DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.8e-74
Identity = 180/232 (77.59%), Postives = 189/232 (81.47%), Query Frame = 0


Query: 1   MASSKKSSIATEAKSKEAGTSKPA------PKTKTHNNARKSDNDDSKKKKKKKK---KI 60
           MASSKKSS  TEAKSKEAGTSK A       KTKT +NA KSD D SKK   KKK   K 
Sbjct: 1   MASSKKSS--TEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKK 60

Query: 61  TTNNGSVKDNEALAISAPGGSASEEDDADEHRAETTSKKPNASKSKKVKRNHAKKEENGY 120
             NNGS ++N+   ISAP  SAS EDDADE R ETTS+K N+SKSKKVKRNH KKEENGY
Sbjct: 61  HANNGSAEENDVFEISAP-DSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGY 120

Query: 121 AAEEEE---AEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYA 180
             EEEE    EEKI KFPMHRIKKI RDENSDLRINQEALFLVNKA+EMFLVQFCKDAYA
Sbjct: 121 EEEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYA 180

Query: 181 CCAEDRKKSLAYKHLSSVVGKRKRYDFLSDFVPEKLKFEDALKQRSMAESGK 221
           CCA+DRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALK+RSMAESGK
Sbjct: 181 CCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229

[Close]

BLAST of CcUC02G038730 vs. TAIR 10
Match: AT1G07980.1 (nuclear factor Y, subunit C10 )

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-18
Identity = 77/209 (36.84%), Postives = 117/209 (55.98%), Query Frame = 0


Query: 20  TSKPAPKTKTHNNARKSDNDDSKKKKKKKKKITTNNGSV--KDNEALAISAPGGSASEE- 79
           + KP  K    +      +  SK+    + K T+N  ++  K  E   IS    S S E 
Sbjct: 4   SKKPKEKKARSDVVVNKASGRSKRSSGSRTKKTSNKVNIVKKKPEIYEISESSSSDSVEE 63

Query: 80  ----DDADEHRAETTSKKPNASKSKKVKRNHAKKEENGYAAEEEEAEEKICKFPMHRIKK 139
               D+A +     + +    S     K +  ++E++G       AE+   KFPM+RI++
Sbjct: 64  AIRGDEAKKSNGVVSKRGNGKSVGIPTKTSKNREEDDG------GAEDAKIKFPMNRIRR 123

Query: 140 IMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAEDRKKSLAYKHLSSVVGKRKR 199
           IMR +NS  +I Q+A+FLVNKA+EMF+ +F ++AY    +D+KK + YKHLSSVV   +R
Sbjct: 124 IMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSVKDKKKFIHYKHLSSVVSNDQR 183

Query: 200 YDFLSDFVPEKLKFEDALK--QRSMAESG 220
           Y+FL+D VPEKLK E AL+  +R M ++G
Sbjct: 184 YEFLADSVPEKLKAEAALEEWERGMTDAG 206

[Close]

BLAST of CcUC02G038730 vs. TAIR 10
Match: AT1G56170.1 (nuclear factor Y, subunit C2 )

HSP 1 Score: 45.8 bits (107), Expect = 5.1e-05
Identity = 28/94 (29.79%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 115 EEEAEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAEDR 174
           E   + K    P+ RIKKIM+ +     I+ EA  +  KA EMF+++    A+    E++
Sbjct: 67  EHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENK 126

Query: 175 KKSLAYKHLSSVVGKRKRYDFLSDFVP-EKLKFE 208
           +++L    +++ + +   +DFL D +P ++LK E
Sbjct: 127 RRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE 160

[Close]

BLAST of CcUC02G038730 vs. TAIR 10
Match: AT1G56170.2 (nuclear factor Y, subunit C2 )

HSP 1 Score: 45.8 bits (107), Expect = 5.1e-05
Identity = 28/94 (29.79%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 115 EEEAEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAEDR 174
           E   + K    P+ RIKKIM+ +     I+ EA  +  KA EMF+++    A+    E++
Sbjct: 67  EHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENK 126

Query: 175 KKSLAYKHLSSVVGKRKRYDFLSDFVP-EKLKFE 208
           +++L    +++ + +   +DFL D +P ++LK E
Sbjct: 127 RRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE 160

[Close]

BLAST of CcUC02G038730 vs. TAIR 10
Match: AT5G63470.1 (nuclear factor Y, subunit C4 )

HSP 1 Score: 45.4 bits (106), Expect = 6.7e-05
Identity = 28/95 (29.47%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 115 EEEAEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAEDR 174
           E+  + K  + P+ RIKKIM+ +     I+ EA  L  KA E+F+++    ++    E++
Sbjct: 69  EQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENK 128

Query: 175 KKSLAYKHLSSVVGKRKRYDFLSDFVP-EKLKFED 209
           +++L    +++ + +   +DFL D VP E++K E+
Sbjct: 129 RRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEE 163

[Close]

BLAST of CcUC02G038730 vs. TAIR 10
Match: AT5G63470.2 (nuclear factor Y, subunit C4 )

HSP 1 Score: 45.4 bits (106), Expect = 6.7e-05
Identity = 28/95 (29.47%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 115 EEEAEEKICKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAEDR 174
           E+  + K  + P+ RIKKIM+ +     I+ EA  L  KA E+F+++    ++    E++
Sbjct: 69  EQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENK 128

Query: 175 KKSLAYKHLSSVVGKRKRYDFLSDFVP-EKLKFED 209
           +++L    +++ + +   +DFL D VP E++K E+
Sbjct: 129 RRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEE 163

The following BLAST results are available for this feature:

BLAST of CcUC02G038730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902902.1	1.7e-90	89.69	DNA polymerase epsilon subunit C [Benincasa hispida]	[more]
XP_008463933.1	1.7e-87	86.61	PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo]	[more]
XP_004149539.2	3.3e-86	85.78	chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus]	[more]
XP_022986059.1	4.0e-76	75.95	DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima]	[more]
KAG7010622.1	1.2e-75	76.82	Chromatin accessibility complex protein 1, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of CcUC02G038730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9V452	4.5e-06	34.00	Chromatin accessibility complex 16kD protein OS=Drosophila melanogaster OX=7227 ...	[more]
Q9NRG0	5.9e-06	29.91	Chromatin accessibility complex protein 1 OS=Homo sapiens OX=9606 GN=CHRAC1 PE=1...	[more]
Q9JKP8	7.7e-06	29.73	Chromatin accessibility complex protein 1 OS=Mus musculus OX=10090 GN=Chrac1 PE=...	[more]
P79007	1.5e-04	30.34	Transcriptional activator hap5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of CcUC02G038730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKU7	8.4e-88	86.61	DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV...	[more]
A0A0A0KCQ2	1.6e-86	85.78	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G2944...	[more]
A0A6J1JF10	1.9e-76	75.95	DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1FVY8	1.3e-75	78.76	DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1CGZ0	1.8e-74	77.59	DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 ...	[more]

BLAST of CcUC02G038730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07980.1	1.4e-18	36.84	nuclear factor Y, subunit C10	[more]
AT1G56170.1	5.1e-05	29.79	nuclear factor Y, subunit C2	[more]
AT1G56170.2	5.1e-05	29.79	nuclear factor Y, subunit C2	[more]
AT5G63470.1	6.7e-05	29.47	nuclear factor Y, subunit C4	[more]
AT5G63470.2	6.7e-05	29.47	nuclear factor Y, subunit C4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 101..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..92
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 22..218
None	No IPR available	PANTHER	PTHR10252:SF93	HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED	coord: 22..218
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 124..187 e-value: 3.5E-16 score: 59.2
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 81..202 e-value: 1.0E-24 score: 89.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 124..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G038730.1	CcUC02G038730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity