CcUC02G038530 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G038530
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr02: 33947451 .. 33952844 (+)
RNA-Seq Expression	CcUC02G038530
Synteny	CcUC02G038530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTGGTGAAAACATAAGAACTACAAGCCTACAACCTCATTTCTATTTCTGCGGTTTCTTCCAAAGCACCCCTATCTTTCTTAGTACATTCACATTTTTCTTTTTCAGTAAATCCTCATCTGAATCTTCTGAATACAGCGGACCGATCTTACCGGTAATGGCATTGTAGTTGCTGTCCATTGATCCCGTTCTGCCTACGAATTCCCCGTTGCTTCCAGCTGAAATCATGGCTGCAGCTGCCTCTGCCGCCTTCCTCCATTGCTCCGACTGCACCTTCAGCGTTCTCAGTTCCATCTCCATTTCGGCATTGGCTGCTTGGGCTGCTTCTAGTTCGGCCGCCCCAACGGATTTCCTGCTGGTACTTCGATCTGGTTCTTCCGCTATGATTCCGAGTTTAACTTGGGTGTCTCTCTCTATTGGTGTGGATGTAACTAGTTCGGTTGTCGTTTCGTCCTTCGCTTTGGTCTTCATTGTGTCCCTTCTACTGATTTCAGATATCAGCATTTCATTCTCCTCCGATACACTCTGGAATTCTGTCTCTTTGTCTAAGAGATTGGCCTTTAAATCTGCAATGCAGTTCTTCAAGTCCTCCAGCTCTTTCTCTAGTTCGTATACTCGGTGGCTCGATAGGCTCTTCTCGAGCTTACAGCTTAACTCCAAGTTCTCTTCCGTGATGCTCCTTAATTCGGTTTCTCTGTTGAGTAATTTCAACTTGAACTCGTCAATTTCAACTCTCGATTTCTCTAATTCCTTCTTGAGTTCAACCTCTCTCAGATTTGCATCAGACTTCACATGTTTAGCCTCTGTGGAAGATATTGGTTCAAGGGTACTCTGACCTTGTTCCCCCTCGTATTCTGCTTCGGCAGCCACTGGAGCTGATTTCTGTTGCTCGACCTCGGACTGCAGAGAGCGAAAATCTGCTTCAAACTGTTCTGATTCCCTTGTCTCGCCTTCTGGTGCTTCCAGCTCTCGATTCTTGCCAACTGCAAACGTCTCAAAAGCTTTCCAGCTAGCGTTTGCAAGGGCAGGTTCCAGTTTACGAACAAGAGTTTCCAGTATGTTTACATGTTCCCGAGATTCGTCCAACTCCAAAGTAACTGTATTCCAATCTTCAAAAGCTTTTGTAGAATCAAATCCAAGCAACTCCACCATTTCTTTTGCGTATTCTACTTGTGCCGCAGTTTCACTTATAAGTGCTTGGACCTGAGTTTCAGATACTTCACAAACTTGCAGTTGTTTTTTCATGCTTCCGATAAGGGAGAGAATTTCTGACAATAACTTTTTCAATTTACTGTGCTTCTCATTCACAGAACCTGCATGCTTCGTCTGAAAAGCTTTGGATTCATCGACTACCTGAAGTTTGAGTTTAAGCTGCTGTGTTATGTTCACCATTGCTAAGGCAACAGAGTCGACAGATTCCGACTTCTCAGTGACCTCAGATGCAGAATGCAGAGATTGATCATCTTCTTGTGCTTGCTTCTGGAGCTCTTTAGGATGACCTTGCTCGGAAGAAGATAACCTATGTTCCTTGGCATTTGATGGCACACTGGACACCTCGGCATCTACTTGGGCTCGGTCCTTTCGCAACTTGGACGAATGTAGTTGCTCCTTTGCCTTTTTAAGATCCTTCTGAAGAATAGAAATCTGAGATTCCAATTCAGATATCTTGTTTTGGCACTTCTTCTGAACAAGAGAGAAAAAACGGATCAGACATTACTAGCTTCAACTTCAGAGTTCAGTTAACCACTAAATAAAATCTTGAACTCCTCTCCTTTTTTTTTTTTTTTCTTTATAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCTTTTTTTTTTTTTTTCTTTATAATAGATCACAATATCCTATAGGAAATTAGCTTTTTTAAATAATAATAGTAATAATAATGAGCACAACTACAAGAACATGATTGACAAATCACAACTAAATTTTTGCTAATAAAATAACCAAGTTGATAGGATTCGTCTTTAATTATTCACTACAGGGAACAGATTGTACATTACGGTGTGGAAACTGGAACAGATTGTACATTACAGTATTGGAAGTTGTGATTTCATAGTACAACCACTAAAGAAAACTTCAAGCCTTTTATTTTCAGTTCACATTTTTATAATGTACCACAAATCCTGTGGAAAAGGAATGTTTTTATAAGAATCATAAAACACGATCGACTAAGCAAGAATGATTATTTGCTAATGTAATAACAAAGTTGATCGTATTGACCTTTACTTAATCACAACAGAGCACATAATTCAGTGAAGATCGTACTATATGAACTGACATTTCTGATTAGAAGGCAAACTCGAGCACATACAAGTTCACTTGAGAAATCTCACATGCTCCGGGTTTCTACATTCACAAATCTTAATGAATGGGAGGACATTACAAAAAGGACAGTTGAACCAATATGAATATTTTTGGAGAATAATATGTGTGAATTGTGCTCCCATGTTCTTCCTAAAAACTACATGTGGGTGGTTTGTAGAAAGTCCAAACGTTAAACTTTCAAAATAGGCTTCTTAGCTATAATCCCATCTAGGAGAAAAAAGATAGTCAACTGGTAGTAGATACATACACAAGTAAAATATATAGTATACAAAATGGGTACCGTGATGCTTTATCTCCAGCCCTTCATTGTATTCGTTATTTTCTAATACAAAGCCAGATCGTCATCGTCGTCTTCTTCTTCCTTTTTTAATGATGAAAAACCAGAAAGAGAATACAAAGCCAATTTCTTGCTACATAGAAATTTACTTAAAGAAAATCTACTTCCAAGTTCCAACTTGATTGAACAAAGCTTAATTCAAACAGAAGAGAGCTTAGGAAGCCTTTGTATTGGCTGTCAAATTAGAATTGGATTAGCTCAATCCAAAATATATTTCCTTAATACATTTTGCTCCTACAAATTTATCCCTACTCATACAAGAACGACATCAAGGTGAAATATCAATGAAAAATTAAAGAATCAAGTGCATAAAATCAACCAAATCAATTAACTTTATAAAATAGTGTACCTCTGACAGTGGAGTCCTGGGCGACCTGCCAATAATTTTAGGGCTTCTCTCTTTAGATATCCTTCCTGTTTGATTGGAAGAAGATGAAGAGTCGCACTTCAATGCTGTGGGCTTAACTTGACGAGCAGCTTTTAAAGAGACTTTTTTGGGTGCCTCCAATGAACTTCTGGAATCAAAATATATCAAAACGGGTTCAGGGAGTTAAAAGCTTTAGCAGAACTTTTGCCTATTACATGCTGTTAAGACACCCTAAAAGGCACATATATGAATACAACACAGGGATACGACACAACATAGGCACAAGGCAAGGACACATTCATCCAAATATATATCATTTATATACCAAAAGAAAATTCAAAGTAAATGGGTTGATTGATTTATATGCTTAAAAAACTTAATTTGATGTATTTCACACTCAAAAGTTATTATTATTGTCATATATTTGTTTTTTTACTTTTTAGTCTACACAACAAGTATTCTGTGCATGTCTAATACATTTGTTACACTAACAAGTGTCCGATACGTATTTAACAAATACCGGAGTGCCCAAGTGTCGAATACAGACACGCTAGCCAAACTAAAGTTCACGTGCTTCTTAGAAGATAACCAAATTGTAACAGTCAACAAAGATGAGACTATAAGAAGGCAAGGAACGTTAGGAATACTAGCAGCAGAAATTAGCCAATACATTGTTACGAAATGGTGGTTGAAAAATAATGTGGGTTAGAAGATGTTATGGATAACATATAGTGAGACTATTAGAGAATTAAGATTCTTGAATGTTTCTTTCATTGGTGCGGCACGACATTTCAGCCCCATTTTCTTGAATTTCAATCTCAAATTCAGATTTTTTTTTTTTTTTTATTTCCTTAGTGTCTGAGTCAGCTTAGAAGTATCTCAACTAATCTCACGGGACAACCCGCCACTCTACAACATTTGGGTGTCAAGGAAACTCGTAGGATATTAAATCTGAGGTAAGTGGCCACCATGAATTGGACCCATAACCTCTTAGCCATTTATTGAGATTATGTCTCCTTTTTTACCACTAGGCCAACCCATGATGGTTAATATCAAATTCAGGTTCTCTTTGCATATCCAAATAGTTCTCCCCAAGAGCTGCAAAAAGAGGTGTACCGTGGCTGTCACAAGTTACAATTGAGATATTTGGAATCAAATTGACTAAGAAGAAAGCCTCTTTTCAATACAAATTGAACTTCTAGTGCTGGTAGTAAAAAATGATCTAATTGGTTTGAGGACCCATTTGGTAAAAGTCAACAATGATAAGTTGTCAACAAATGAAGTGGAGATCCAACTGACAGCTTGGTGGAAGTCATAGGCACTCATTCAAAAAGAAGAAGACAAACCATTTCCAGCAAATCAATGGCAAATCTCACATCACTCATTGAATGTGAATTTGGTATACAGACATATTCTTGCAAAGACCAGTCATGGGAACCTACTTCCACGACACAAGAAAGGAGATGGTTTTCCCAATGTATGACATATTGACATGTTTGGAAGTGATTTTGAATTGAAAAAAGTAAAAATAAAAATAAATCACTTTTGTTTAGTTTAAAAATAACTCCAAAACATATCTCTAACCATTCAAAATTAATTTAATGTTTGATTTTCCACTTCTAAGCACGATTGTCATACAATCAAAAAAATGATTCTAGATGATTGAAAAACAAGTTTTGAAGTGATTTTAACCAAAATCACTCTCAAACAAAACATTAACTCTCAAATGCCAATAAAAATAAGTAACAAAACCATGTTTCAACACATAGATACGTCTTAACTTGCTGTTCGTTGGTGGAAGGTCTTCGGTTTAACTAATTGTTGGTACAACATTTAGTGTCTTTCAAACATTCTCGAGAAACTCAAACAATAAGAATGAAATGCTTGAAATCATCAAAATAAGTTAATGAAGTAAGTTCAGAGAGACTGAAGAACAACTGAACCATTAACTGCAACACTTTAGTTCATTCCTACATCCTACCAATAGATCAAATGTACATTCAACTTCAAACAGTAACGCCCATAAACAGAAAATGATCAAGAAACATGAAAGAAAGCTTTTAGAAAGAAAAGGCAGTAAACCAGAAGAGCACTTAAAATTACCTGGATTTTGAAGTCTGCATCACTTCCTTTCTCTAAAAACAAAGTGTCAACACAATGGATTTGATTAAACTTACTTGACAGTTCCCTCACCCACAAAAGACAAGCAAGGCTGCAACAGATAGGGTTCATAGAGGAAGCAAAAGGATCAAAGCTAGTTCATGGTGA

mRNA sequence

ATGGCCGTGTTGCTGTCCATTGATCCCGTTCTGCCTACGAATTCCCCGTTGCTTCCAGCTGAAATCATGGCTGCAGCTGCCTCTGCCGCCTTCCTCCATTGCTCCGACTGCACCTTCAGCGTTCTCAGTTCCATCTCCATTTCGGCATTGGCTGCTTGGGCTGCTTCTAGTTCGGCCGCCCCAACGGATTTCCTGCTGGTACTTCGATCTGGTTCTTCCGCTATGATTCCGAGTTTAACTTGGGTGTCTCTCTCTATTGGTGTGGATGTAACTAGTTCGGTTGTCGTTTCGTCCTTCGCTTTGGTCTTCATTGTGTCCCTTCTACTGATTTCAGATATCAGCATTTCATTCTCCTCCGATACACTCTGGAATTCTGTCTCTTTGTCTAAGAGATTGGCCTTTAAATCTGCAATGCAGTTCTTCAAGTCCTCCAGCTCTTTCTCTAGTTCGTATACTCGGTGGCTCGATAGGCTCTTCTCGAGCTTACAGCTTAACTCCAAGTTCTCTTCCGTGATGCTCCTTAATTCGGTTTCTCTGTTGAGTAATTTCAACTTGAACTCGTCAATTTCAACTCTCGATTTCTCTAATTCCTTCTTGAGTTCAACCTCTCTCAGATTTGCATCAGACTTCACATGTTTAGCCTCTGTGGAAGATATTGCCACTGGAGCTGATTTCTGTTGCTCGACCTCGGACTGCAGAGAGCGAAAATCTGCTTCAAACTGTTCTGATTCCCTTGTCTCGCCTTCTGGTGCTTCCAGCTCTCGATTCTTGCCAACTGCAAACGTCTCAAAAGCTTTCCAGCTAGCGTTTGCAAGGGCAGGTTCCAGTTTACGAACAAGAGTTTCCAGTATGTTTACATGTTCCCGAGATTCGTCCAACTCCAAAAACCTGCATGCTTCGTCTGAAAAGCTTTGGATTCATCGACTACCTGAAGATGACCTTGCTCGGAAGAAGATAACCTATGTTCCTTGGCATTTGATGGCACACTGGACACCTCGGCATCTACTTGGGCTCGGTCCTTTCGCAACTTGGACGAATGGAACAGATTGTACATTACGGTGTGGAAACTGGAACAGATTGTACATTACATTCCCTCACCCACAAAAGACAAGCAAGGCTGCAACAGATAGGGTTCATAGAGGAAGCAAAAGGATCAAAGCTAGTTCATGGTGA

Coding sequence (CDS)

ATGGCCGTGTTGCTGTCCATTGATCCCGTTCTGCCTACGAATTCCCCGTTGCTTCCAGCTGAAATCATGGCTGCAGCTGCCTCTGCCGCCTTCCTCCATTGCTCCGACTGCACCTTCAGCGTTCTCAGTTCCATCTCCATTTCGGCATTGGCTGCTTGGGCTGCTTCTAGTTCGGCCGCCCCAACGGATTTCCTGCTGGTACTTCGATCTGGTTCTTCCGCTATGATTCCGAGTTTAACTTGGGTGTCTCTCTCTATTGGTGTGGATGTAACTAGTTCGGTTGTCGTTTCGTCCTTCGCTTTGGTCTTCATTGTGTCCCTTCTACTGATTTCAGATATCAGCATTTCATTCTCCTCCGATACACTCTGGAATTCTGTCTCTTTGTCTAAGAGATTGGCCTTTAAATCTGCAATGCAGTTCTTCAAGTCCTCCAGCTCTTTCTCTAGTTCGTATACTCGGTGGCTCGATAGGCTCTTCTCGAGCTTACAGCTTAACTCCAAGTTCTCTTCCGTGATGCTCCTTAATTCGGTTTCTCTGTTGAGTAATTTCAACTTGAACTCGTCAATTTCAACTCTCGATTTCTCTAATTCCTTCTTGAGTTCAACCTCTCTCAGATTTGCATCAGACTTCACATGTTTAGCCTCTGTGGAAGATATTGCCACTGGAGCTGATTTCTGTTGCTCGACCTCGGACTGCAGAGAGCGAAAATCTGCTTCAAACTGTTCTGATTCCCTTGTCTCGCCTTCTGGTGCTTCCAGCTCTCGATTCTTGCCAACTGCAAACGTCTCAAAAGCTTTCCAGCTAGCGTTTGCAAGGGCAGGTTCCAGTTTACGAACAAGAGTTTCCAGTATGTTTACATGTTCCCGAGATTCGTCCAACTCCAAAAACCTGCATGCTTCGTCTGAAAAGCTTTGGATTCATCGACTACCTGAAGATGACCTTGCTCGGAAGAAGATAACCTATGTTCCTTGGCATTTGATGGCACACTGGACACCTCGGCATCTACTTGGGCTCGGTCCTTTCGCAACTTGGACGAATGGAACAGATTGTACATTACGGTGTGGAAACTGGAACAGATTGTACATTACATTCCCTCACCCACAAAAGACAAGCAAGGCTGCAACAGATAGGGTTCATAGAGGAAGCAAAAGGATCAAAGCTAGTTCATGGTGA

Protein sequence

MAVLLSIDPVLPTNSPLLPAEIMAAAASAAFLHCSDCTFSVLSSISISALAAWAASSSAAPTDFLLVLRSGSSAMIPSLTWVSLSIGVDVTSSVVVSSFALVFIVSLLLISDISISFSSDTLWNSVSLSKRLAFKSAMQFFKSSSSFSSSYTRWLDRLFSSLQLNSKFSSVMLLNSVSLLSNFNLNSSISTLDFSNSFLSSTSLRFASDFTCLASVEDIATGADFCCSTSDCRERKSASNCSDSLVSPSGASSSRFLPTANVSKAFQLAFARAGSSLRTRVSSMFTCSRDSSNSKNLHASSEKLWIHRLPEDDLARKKITYVPWHLMAHWTPRHLLGLGPFATWTNGTDCTLRCGNWNRLYITFPHPQKTSKAATDRVHRGSKRIKASSW

Homology

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BLAST of CcUC02G038530 vs. ExPASy TrEMBL
Match: J3M3J6 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-04
Identity = 62/139 (44.60%), Postives = 72/139 (51.80%), Query Frame = 0


Query: 12  PTNSPLLPAEIMAAAASAAFLHCSDCTFSVLSSISISALAAWAASSSAAPTDFLLVLRSG 71
           P  +P  P    AAAASAA  H SDCT    SS SISA AA AASS +       +L S 
Sbjct: 3   PVTAPPPPPR-AAAAASAALRHWSDCTRRRRSSASISAPAACAASSCSDALAARRLLLSA 62

Query: 72  SSAMIPSLTWVSLSIGVDVTSSVVVSSFALVFIVSLLLISDISISFSSDTLWNSVSLSKR 131
           SS   PS    S S  +  +SS   +S+      S    SD+S SFSS TL ++VSLS R
Sbjct: 63  SSVTYPSRIRTSCSAALASSSSATAASYRRCTSASFFPASDLSASFSSITLCSAVSLSIR 122

Query: 132 LAFKSAMQFFKSSSSFSSS 151
           LAF S M      S  SSS
Sbjct: 123 LAFSSVMSVIDFISFASSS 140

The following BLAST results are available for this feature:

BLAST of CcUC02G038530 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G038530 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G038530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
J3M3J6	2.0e-04	44.60	Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1	[more]

BLAST of CcUC02G038530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G038530.1	CcUC02G038530.1	mRNA