CcUC02G038170 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G038170
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Ribosomal protein L2
Location	CicolChr02: 33585000 .. 33588261 (+)
RNA-Seq Expression	CcUC02G038170
Synteny	CcUC02G038170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTACTTGAGACCACCTCACCCTAAACAGACACTGGTGGAATCAACCCTAAGGCACCCCTTTACTGATTGGCACATTCCAACCCGTAAGTCTAAGGATTCCTCATCATCTTATCTGACGTGCTGGCTATCTTTTCCTTCCTCCCATCCAGGGTGGCTTACTTTATAGCGTCTTTACAATCGTGTGTAATATAATAGTAATACAATGTCTACGGTTCCAATCCTTGTGAGCGTGAAAGTCTGCGAAGTTAAGAGTAGTTCATATTAGTCCACAAAATTTCTTTTATGGAGGTCTCATTCGGTCCAACAATGAGGAGTTGGTGCATTGCAGCAGGTTCGAGCCTTGAGGAAGCACTCTGCGGGGTAGGTCCAGAGGAACGAGGAAGGCGAAAAGAGGGGACTGCGCGCTTTTCCTTTTCTCCCTATCTTCTTAGCGGAAAGATGTACTACTTGCTTACCCAAGCACTTGGGGTCTTTATGGGTTCGGTAAGATGAGTACTTAAAAGTCAGGGCTCGCCTAGTGGGAAGTAGTGAGTCCCGTCTCCCCCCCCCCCTCGAATGAAGAAGTAGTGGGACGCGTATGTGCCTTTATTTAGATTCTTTCTCTTTTTGAATGATTGAGACGAGAGGGGAGAATCTTTCAAAAAAATTTCTCTGGCAAAAACGAAATTCATCAAAGAGATAAAAAAGAAAAAAAAGAAAGGGAAATTTTGGGGCCGAAAAAGCTCATCGATTCTTCCCTTCATTCCTTTTCTCTTGGACATCTCACTTGGAATGCTATGCATTCTTTTCGATCTTGTACTGACGCTGAATACCGACTCAATCTTGATGAAAAAAGTAAAAACGTGCGCAACTACATCAAAAAACTTTGATGGTATACAAGAGATCATCTCAACCTTCTAAAGTATATATATTCACCGATAGGCGCTAGTTTATATGGAATTTCGGGGCTAAATCCCGATACGAGAAAATTAGGCCTACTGGAAATGGCACTGAGACAGGCGCTTCTTCTGCGAGATTTATCCTTATAGAAAAAGAAAGGTCAAACCGTGATTGACGCTTAGCATTCGAGGGTGGGCGAGGCATAAGCCTTTAAGCAGCTGCTCTGATAACTTGTAGAAATACAAGTTATTATAGTCACTATTTGAATTAATTAGAGTAACTTTAGAGTTAAACACATGATTTTGGTAGTTGAATTATGTAAAATGTATCACCATGTGTTGGCATTATTTACAAAAGAAAATACCTGAAAAATTATGAGCTTTTTTGTTCTTAACGCAGGATTAAGAAGAAAAGAAGCACGAATAACCTAAGTACTAGAGACGAAGCTGCTGCGAGAACAAATGGAAACCCATGTGTCGAGGCTATGCGTTGAGAACATGTGTTGAGAAAAAGTAGATACAGACGCCTGAGCAAAAGTTGTCATGTCATTATGCAAAAGGATAACACGTTATCAGATCATGGCAAAACCAATGGGCCGACAATGTGAAAAGTCTACTCAGCGGGGTAGGAAATTTAATGCAAAGGTGTCAGGTCATCATGAGTTTCAACTTTTTAACGCCTATAAATAGCCCAAAGCTTCTCCAATTGAAAAAAAAAGAGAAGGAGAAAAAGAGAGAGAGAAACGAGTGCAAGAGGCGAAAGCTCTGCACAAATCCTCCTTCACCATAACTAGCCTCCAATTTCGAGCTCTTCTGAGAGAAGGATTCTGAGAACTATAAGAGCTTATACTTGGGCTTTTATAGGAAAACTTGCTTAATTATGATCATACTTGAGTAATTCTCGACGCATCTTTGTACAGAAATCATCATATCTATTTTTGTGCAACAAGCTAAGAAATTCAATCTAAATCGAAAATAGAAATCCAACAACATGCTCCTAAAATCCCCTTTAAAACTAGGGGGACTCTTGCTCCTGTCATTGAGACTTGCTTTATCACAGGATTGAATCTGTCTAGACTTGATTTGATGCGGCGCGAGGAGTTAACGACCGGACGTGCTGCAACCTAGGGATCACCAGGCAACTCTTTCGCTCTATAGGGATTTGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGGGGGGGGGGGGGGGGGGGGGCATAGCACAATTCTTCTTGGAGGAGGGTTGGTTTGCCTGGGTGACTGATCCTGCCATAATGTACTCCTACCTATAACGCCGGCAACCAAAGTCGAGCATACATGCTAGCCTGCCGTTTTTTTTTAAGAGTAGGGCAGAATCGAATGATTACGAGCTCGACAATGAGACAAAGGCAAAAGGGGAGAGCACTTAGACAATTCACTTTGAGTACAGGGAAGTCCGCTGGTAGGAATTCCTCAGGGCATATTACGGTTTTTCACCAAGGGGGTGGATCGAAGCGATTGCAGCGAAGAATTTATCTGAAACGAAGCACTTCATCTATGGGCATTGTGGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGAGGGGGTCCGCCAGAGGAAATGCAAGATGATAGAGGAGTTCGCTCCGTCGTGTAAGATCCTCGAACCTACCACGACCACCATCCACGGCCTATTTTCGTTCTCTTCCCCGCCCGAGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACGGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGGATGCCTCCTTGGTCGAAGAGCCCCTTTACTAGTAAGGGTGCAGGAAGCAAAAAAACTTGCGTAAAGGACGTTTTTTTCTCGGCCTTCTCCTCTCAAAAGACTAAGAGAGAGATAGCATCCCTTTCCTTCGGTAGCTCTTTTGGTTTCCCAAGGGTAGCGGTAACTGGGGCAAAGCCCACTTTCTTCGCTTTACAAATGAGAGATAAACTCATAGGAAAAAATACGTTCTCTCTTTGCGAGGTTCGAAAGTGGAGAATGCATAGCATTCTCTGGGCACATAGGATTAAACGTAAAGTTGCGCTTTCTTAGCCAAGTTTTAGGCGGCAAGAGACTTTAGGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACCAGAGATGGATCAAGGTAACTTACCTGCCAAGCCGATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGCCAATCGTCTAACTATGTTTTATATATACTGGAAGCGTCAGAGATACTATACTGACGGTATAATGTCGCCACCAGAGAAGGCTGCTTCATACTAG

mRNA sequence

ATGGGTTCGAGCCTTGAGGAAGCACTCTGCGGGGTAGGTCCAGAGGAACGAGGAAGGCGAAAAGAGGGGACTGCGCGCTTTTCCTTTTCTCCCTATCTTCTTAGCGGAAAGATGTACTACTTGCTTACCCAAGCACTTGGGGTCTTTATGGGTTCGAATCGAATGATTACGAGCTCGACAATGAGACAAAGGCAAAAGGGGAGAGCACTTAGACAATTCACTTTGAGTACAGGGAAGTCCGCTGGTAGGAATTCCTCAGGGCATATTACGGTTTTTCACCAAGGGGGTGGATCGAAGCGATTGCAGCGAAGAATTTATCTGAAACGAAGCACTTCATCTATGGGCATTGTAGCTTGCTTCTCTCCTGGACGGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGGATGCCTCCTTGGTCGAAGAGCCCCTTTACTAGTAAGGGTGCAGGAAGCAAAAAAACTTGCGTAAAGGACGTTTTTTTCTCGGCCTTCTCCTCTCAAAAGACTAAGAGAGAGATAGCATCCCTTTCCTTCGGTAGCTCTTTTGGTTTCCCAAGGGTAGCGGTAACTGGGGCAAAGCCCACTTTCTTCGCTTTACAAATGAGAGATAAACTCATAGGAAAAAATACGTTCTCTCTTTGCGAGGTTCGAAAGTGGAGAATGCATAGCATTCTCTGGGCACATAGGATTAAACGTAAAGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACCAGAGATGGATCAAGGTAACTTACCTGCCAAGCCGATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGCCAATCGTCTAACTATGTTTTATATATACTGGAAGCGTCAGAGATACTATACTGACGGTATAATGTCGCCACCAGAGAAGGCTGCTTCATACTAG

Coding sequence (CDS)

ATGGGTTCGAGCCTTGAGGAAGCACTCTGCGGGGTAGGTCCAGAGGAACGAGGAAGGCGAAAAGAGGGGACTGCGCGCTTTTCCTTTTCTCCCTATCTTCTTAGCGGAAAGATGTACTACTTGCTTACCCAAGCACTTGGGGTCTTTATGGGTTCGAATCGAATGATTACGAGCTCGACAATGAGACAAAGGCAAAAGGGGAGAGCACTTAGACAATTCACTTTGAGTACAGGGAAGTCCGCTGGTAGGAATTCCTCAGGGCATATTACGGTTTTTCACCAAGGGGGTGGATCGAAGCGATTGCAGCGAAGAATTTATCTGAAACGAAGCACTTCATCTATGGGCATTGTAGCTTGCTTCTCTCCTGGACGGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGGATGCCTCCTTGGTCGAAGAGCCCCTTTACTAGTAAGGGTGCAGGAAGCAAAAAAACTTGCGTAAAGGACGTTTTTTTCTCGGCCTTCTCCTCTCAAAAGACTAAGAGAGAGATAGCATCCCTTTCCTTCGGTAGCTCTTTTGGTTTCCCAAGGGTAGCGGTAACTGGGGCAAAGCCCACTTTCTTCGCTTTACAAATGAGAGATAAACTCATAGGAAAAAATACGTTCTCTCTTTGCGAGGTTCGAAAGTGGAGAATGCATAGCATTCTCTGGGCACATAGGATTAAACGTAAAGGGCTTGTTGGAGGTGCTGAGCATAACGAATCGAAACCAGAGATGGATCAAGGTAACTTACCTGCCAAGCCGATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGCCAATCGTCTAACTATGTTTTATATATACTGGAAGCGTCAGAGATACTATACTGACGGTATAATGTCGCCACCAGAGAAGGCTGCTTCATACTAG

Protein sequence

MGSSLEEALCGVGPEERGRRKEGTARFSFSPYLLSGKMYYLLTQALGVFMGSNRMITSSTMRQRQKGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGIVACFSPGRMAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTCVKDVFFSAFSSQKTKREIASLSFGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAHRIKRKGLVGGAEHNESKPEMDQGNLPAKPIGEGPKDGACKANRLTMFYIYWKRQRYYTDGIMSPPEKAASY

Homology

[Close]

BLAST of CcUC02G038170 vs. NCBI nr
Match: YP_003587229.1 (ribosomal protein L2 [Citrullus lanatus] >ACV96645.1 ribosomal protein L2 [Citrullus lanatus])

HSP 1 Score: 353.2 bits (905), Expect = 2.2e-93
Identity = 196/297 (65.99%), Postives = 202/297 (68.01%), Query Frame = 0


Query: 61  MRQRQKGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGI---- 120
           MRQ Q+GRALRQFTLSTGKSAGRNSSG ITVFH+GGGSKRLQRRI LKRSTSSMGI    
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 60

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 61  EYDPNRSSRIALVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR 120

Query: 181 -VACFSPGRMAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTCVKDVFFSAFSSQKTKREIA 240
            VACFSPGRMAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTC KDVFFSAFSSQKTK E A
Sbjct: 121 KVACFSPGRMAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTCAKDVFFSAFSSQKTKGETA 180

Query: 241 SLSFGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAHRIKRK- 279
           SLSFGSSFGFPRVAV GAKP FFA +MRDKL GKNTFSLCEVRKWR HSILWAHRIKRK 
Sbjct: 181 SLSFGSSFGFPRVAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKA 240

[Close]

BLAST of CcUC02G038170 vs. NCBI nr
Match: YP_009913619.1 (ribosomal protein L2 [Luffa acutangula] >QLJ93019.1 ribosomal protein L2 [Luffa acutangula])

HSP 1 Score: 337.0 bits (863), Expect = 1.6e-88
Identity = 191/304 (62.83%), Postives = 200/304 (65.79%), Query Frame = 0


Query: 61  MRQRQKGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGI---- 120
           MRQ Q+GRALRQFTLSTGKSAGRNSSG ITVFH+GGGSKRLQR I  KRSTSSMGI    
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRIIDKKRSTSSMGIVERI 60

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 61  EYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR 120

Query: 181 -VACFSPGRMAAYVVVGLPTRMPPWSKSPF--TSKGAGSKKTCVKDVFFSAFSSQKTKRE 240
            VACFSPG MAAYVVVGLPTRMPPWSKSPF  TSKGAGSKKTC KDVFFSAFSSQKTK E
Sbjct: 121 KVACFSPGLMAAYVVVGLPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGE 180

Query: 241 IASLSFGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAHRIKR 284
            ASLSFGSSFGFPR+AV GAKP FFA +MR+KL GKNTFSLCEVRKWR HSILWAHR+KR
Sbjct: 181 TASLSFGSSFGFPRIAVAGAKPAFFAPRMREKLRGKNTFSLCEVRKWRTHSILWAHRMKR 240

[Close]

BLAST of CcUC02G038170 vs. NCBI nr
Match: YP_003587363.1 (ribosomal protein L2 [Cucurbita pepo] >ACV96687.1 ribosomal protein L2 [Cucurbita pepo])

HSP 1 Score: 334.0 bits (855), Expect = 1.4e-87
Identity = 187/302 (61.92%), Postives = 199/302 (65.89%), Query Frame = 0


Query: 61  MRQRQKGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGI---- 120
           MRQ Q+GRALRQFTLSTGKSAGRNSSG ITVFH+GGGSKRLQRRI LKRSTSSMGI    
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 60

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 61  EYDPNRSSRIALVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSTPGKVDQR 120

Query: 181 -VACFSPGRMAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTCVKDVFFSAFSSQKTKREIA 240
            VACFSPG+MAAYVVVGLPTR+PP SKSPFTSKGAGSKKTC KDVFFSAFSSQKTK E A
Sbjct: 121 KVACFSPGQMAAYVVVGLPTRIPPCSKSPFTSKGAGSKKTCAKDVFFSAFSSQKTKGETA 180

Query: 241 SLSFGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAHRIKRK- 284
           SLSFGSS GFPR+AV GAKP FFA +MR+K+ GKNTFSLCEVRKWR HSILWAHR+KRK 
Sbjct: 181 SLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKA 240

[Close]

BLAST of CcUC02G038170 vs. NCBI nr
Match: YP_010021233.1 (ribosomal protein L2 [Malania oleifera] >QOI73951.1 ribosomal protein L2 [Malania oleifera])

HSP 1 Score: 327.4 bits (838), Expect = 1.3e-85
Identity = 187/305 (61.31%), Postives = 196/305 (64.26%), Query Frame = 0


Query: 61  MRQRQKGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGI---- 120
           MRQ Q+GRALRQFTLSTGKSAGRNSSG ITVFH+GGGSKRLQRRI LKRSTSSMGI    
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 60

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 61  EYDPNRSSRIAPVRWIEGVQLRRQRKCNTIEECAPPRKILEPTTTTIRGPFSFSSLPGKV 120

Query: 181 ----VACFSPGRMAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTCVKDVFFSAFSSQKTKR 240
               VACFSPG MAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTC KDVFFSA SS K K 
Sbjct: 121 DQRKVACFSPGLMAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTCAKDVFFSALSSPKAKG 180

Query: 241 EIASLSFGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAHRIK 284
             ASLSFGSSFGFPR+AV GAKP FFA +MR+KL GKN FSLCEVRKWR HSILWAHRIK
Sbjct: 181 --ASLSFGSSFGFPRIAVAGAKPAFFAPRMREKLRGKNMFSLCEVRKWRTHSILWAHRIK 240

[Close]

BLAST of CcUC02G038170 vs. NCBI nr
Match: YP_009704608.1 (ribosomal protein L2 [Spondias tuberosa] >QEP09131.1 ribosomal protein L2 [Spondias tuberosa])

HSP 1 Score: 327.0 bits (837), Expect = 1.7e-85
Identity = 183/300 (61.00%), Postives = 194/300 (64.67%), Query Frame = 0


Query: 61  MRQRQKGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGI---- 120
           MRQ Q+GRALRQFTLSTGKSAGRNSSG IT+FH+GGGSKRLQRRI LKRSTSS+GI    
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRSTSSIGIVERI 60

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 61  EYDPNRSSRIAPVRWIEGVQLRRQRKCNTIEEFAPPRKILEPTTTTIRGLFSFSSLSRKV 120

Query: 181 ----VACFSPGRMAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTCVKDVFFSAFSSQKTKR 240
               V CFSPG MAAYVVVGLPTRMPPWSKSPFTSKGAG KKTC KDVFFSAFSS K K 
Sbjct: 121 DQRKVVCFSPGPMAAYVVVGLPTRMPPWSKSPFTSKGAGRKKTCAKDVFFSAFSSPKAKG 180

Query: 241 EIASLSFGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAHRIK 279
           E ASLSFGSS GFPR+AV GAKP FFA +MRDK+ GKNTFSLCEVRKWR HSILWAHRIK
Sbjct: 181 ETASLSFGSSCGFPRIAVAGAKPAFFAPRMRDKVRGKNTFSLCEVRKWRTHSILWAHRIK 240

[Close]

BLAST of CcUC02G038170 vs. ExPASy Swiss-Prot
Match: P93311 (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2 PE=1 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 4.9e-72
Identity = 169/310 (54.52%), Postives = 181/310 (58.39%), Query Frame = 0


Query: 66  KGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGI--------- 125
           + RALRQFTLSTGKSAGRNSSG ITVFH+GGGSKRL RRI LKRSTSSMGI         
Sbjct: 5   RARALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPN 64

Query: 126 --------------------------------------------------------VACF 185
                                                                   VACF
Sbjct: 65  RSSQIAPVRWIKGGCQKKMNTIEKFAPPRKILEPTTNTISGLFSFSFLPGKVDKRKVACF 124

Query: 186 SPGRMAAYVVVGLPTRMPPW--SKSPFTSKGAGSKKTCVKDVFFSAFSSQKTKREIASLS 245
           SPG MAAYVVVGLPT MPP   SKS F SKGAGS KT VKDVFFSAFSS K KRE ASL+
Sbjct: 125 SPGLMAAYVVVGLPTGMPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSPKAKRETASLA 184

Query: 246 FGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAHRIKRK---- 284
           F SSFGFPR+AV GAKP FFA +MR K+ GK+TFSLCEV+K R HSILWAHRIK K    
Sbjct: 185 FASSFGFPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLS 244

[Close]

BLAST of CcUC02G038170 vs. ExPASy Swiss-Prot
Match: P0C8K6 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.1e-54
Identity = 141/288 (48.96%), Postives = 163/288 (56.60%), Query Frame = 0


Query: 61  MRQRQKGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGIVAC- 120
           MRQ  KGRALR FTLSTGKSAGRNSSG ITVFH+GGGSKRLQR+I LKRSTSS+GIV   
Sbjct: 1   MRQSIKGRALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERI 60

Query: 121 -FSPGRMAAYVVVGLPTRMPPWSKSPFTS--------KGAGSKKTCVKDVF-FSAFSSQK 180
            + P R +   +V     + P  +  F +        K   S    +  +F FS+ SS  
Sbjct: 61  EYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALPRKILESTTATIFCLFSFSSLSSPL 120

Query: 181 TKREIASLSFGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAH 240
            + E ASLSFGSS GFPR+AV GAKP FFA +MR+K IGK TFSLCE+RKWR H +LWAH
Sbjct: 121 AQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWRTHCVLWAH 180

Query: 241 RIKRKG--------------LVGGAEHNESKPEMDQ------------------------ 284
           RIKRK               LVG AEHNESK + DQ                        
Sbjct: 181 RIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHAS 240

[Close]

BLAST of CcUC02G038170 vs. ExPASy Swiss-Prot
Match: Q2F969 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=RPL2 PE=3 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 2.1e-54
Identity = 141/288 (48.96%), Postives = 163/288 (56.60%), Query Frame = 0


Query: 61  MRQRQKGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGIVAC- 120
           MRQ  KGRALR FTLSTGKSAGRNSSG ITVFH+GGGSKRLQR+I LKRSTSS+GIV   
Sbjct: 1   MRQSIKGRALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERI 60

Query: 121 -FSPGRMAAYVVVGLPTRMPPWSKSPFTS--------KGAGSKKTCVKDVF-FSAFSSQK 180
            + P R +   +V     + P  +  F +        K   S    +  +F FS+ SS  
Sbjct: 61  EYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALPRKILESTTATIFCLFSFSSLSSPL 120

Query: 181 TKREIASLSFGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAH 240
            + E ASLSFGSS GFPR+AV GAKP FFA +MR+K IGK TFSLCE+RKWR H +LWAH
Sbjct: 121 AQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWRTHCVLWAH 180

Query: 241 RIKRKG--------------LVGGAEHNESKPEMDQ------------------------ 284
           RIKRK               LVG AEHNESK + DQ                        
Sbjct: 181 RIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHAS 240

[Close]

BLAST of CcUC02G038170 vs. ExPASy Swiss-Prot
Match: P92812 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPL2 PE=2 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 2.1e-54
Identity = 141/288 (48.96%), Postives = 163/288 (56.60%), Query Frame = 0


Query: 61  MRQRQKGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGIVAC- 120
           MRQ  KGRALR FTLSTGKSAGRNSSG ITVFH+GGGSKRLQR+I LKRSTSS+GIV   
Sbjct: 1   MRQSIKGRALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERI 60

Query: 121 -FSPGRMAAYVVVGLPTRMPPWSKSPFTS--------KGAGSKKTCVKDVF-FSAFSSQK 180
            + P R +   +V     + P  +  F +        K   S    +  +F FS+ SS  
Sbjct: 61  EYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALPRKILESTTATIFCLFSFSSLSSPL 120

Query: 181 TKREIASLSFGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAH 240
            + E ASLSFGSS GFPR+AV GAKP FFA +MR+K IGK TFSLCE+RKWR H +LWAH
Sbjct: 121 AQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWRTHCVLWAH 180

Query: 241 RIKRKG--------------LVGGAEHNESKPEMDQ------------------------ 284
           RIKRK               LVG AEHNESK + DQ                        
Sbjct: 181 RIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHAS 240

[Close]

BLAST of CcUC02G038170 vs. ExPASy Swiss-Prot
Match: P26859 (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL2 PE=3 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 4.1e-18
Identity = 83/244 (34.02%), Postives = 115/244 (47.13%), Query Frame = 0


Query: 66  KGRALRQFTLSTGK-SAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGIVAC--FSP 125
           KG+AL+Q T    + SAGRNSSG ITVFH+GGGSKRLQR+I  KRSTSSMGIV    + P
Sbjct: 7   KGKALKQLTFHLKRNSAGRNSSGRITVFHRGGGSKRLQRKIDFKRSTSSMGIVERIEYDP 66

Query: 126 GRMAAYVVV-GLPTRMPPWSKSPFTSKGAGSKKTCVKDVFFSAFSS----------QKTK 185
            R +   +V  +   + P  +  F+   +  +K         +FSS          +KT+
Sbjct: 67  NRSSWIALVRWIEGVLRPGKRLAFSKANSRREKNMFFFGLLFSFSSLPRQAQRIKYEKTR 126

Query: 186 ----------------------REIASLSFGSSFGFPRVAVTGAKPTFFALQMR------ 245
                                 +E++    GS  G P +AV GAKP FFA +M+      
Sbjct: 127 ALRPCEQILESSWVLGTRDLRAKEVSLGPLGSFLGLPSIAVAGAKPAFFAFRMKGPSSLT 186

Query: 246 -----DKLIGKNTFSLCEVRKWRMHS---------ILWAHRIK-RKGLVGGAE---HNES 250
                  L G+NTFS  E ++W+  S         + W+   K R GL+  A      + 
Sbjct: 187 GRERLSPLRGENTFSQSEGQRWKTQSGAPRRKSLVLSWSQGPKARNGLMISAHDIGKKDR 246

[Close]

BLAST of CcUC02G038170 vs. ExPASy TrEMBL
Match: D5I399 (Ribosomal protein L2 OS=Citrullus lanatus OX=3654 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 1.1e-93
Identity = 196/297 (65.99%), Postives = 202/297 (68.01%), Query Frame = 0


Query: 61  MRQRQKGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGI---- 120
           MRQ Q+GRALRQFTLSTGKSAGRNSSG ITVFH+GGGSKRLQRRI LKRSTSSMGI    
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 60

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 61  EYDPNRSSRIALVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR 120

Query: 181 -VACFSPGRMAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTCVKDVFFSAFSSQKTKREIA 240
            VACFSPGRMAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTC KDVFFSAFSSQKTK E A
Sbjct: 121 KVACFSPGRMAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTCAKDVFFSAFSSQKTKGETA 180

Query: 241 SLSFGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAHRIKRK- 279
           SLSFGSSFGFPRVAV GAKP FFA +MRDKL GKNTFSLCEVRKWR HSILWAHRIKRK 
Sbjct: 181 SLSFGSSFGFPRVAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKA 240

[Close]

BLAST of CcUC02G038170 vs. ExPASy TrEMBL
Match: A0A7D5XZ32 (Ribosomal protein L2 OS=Luffa acutangula OX=56866 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 7.9e-89
Identity = 191/304 (62.83%), Postives = 200/304 (65.79%), Query Frame = 0


Query: 61  MRQRQKGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGI---- 120
           MRQ Q+GRALRQFTLSTGKSAGRNSSG ITVFH+GGGSKRLQR I  KRSTSSMGI    
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRIIDKKRSTSSMGIVERI 60

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 61  EYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQR 120

Query: 181 -VACFSPGRMAAYVVVGLPTRMPPWSKSPF--TSKGAGSKKTCVKDVFFSAFSSQKTKRE 240
            VACFSPG MAAYVVVGLPTRMPPWSKSPF  TSKGAGSKKTC KDVFFSAFSSQKTK E
Sbjct: 121 KVACFSPGLMAAYVVVGLPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGE 180

Query: 241 IASLSFGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAHRIKR 284
            ASLSFGSSFGFPR+AV GAKP FFA +MR+KL GKNTFSLCEVRKWR HSILWAHR+KR
Sbjct: 181 TASLSFGSSFGFPRIAVAGAKPAFFAPRMREKLRGKNTFSLCEVRKWRTHSILWAHRMKR 240

[Close]

BLAST of CcUC02G038170 vs. ExPASy TrEMBL
Match: D5I3E9 (Ribosomal protein L2 OS=Cucurbita pepo OX=3663 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 6.7e-88
Identity = 187/302 (61.92%), Postives = 199/302 (65.89%), Query Frame = 0


Query: 61  MRQRQKGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGI---- 120
           MRQ Q+GRALRQFTLSTGKSAGRNSSG ITVFH+GGGSKRLQRRI LKRSTSSMGI    
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 60

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 61  EYDPNRSSRIALVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSTPGKVDQR 120

Query: 181 -VACFSPGRMAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTCVKDVFFSAFSSQKTKREIA 240
            VACFSPG+MAAYVVVGLPTR+PP SKSPFTSKGAGSKKTC KDVFFSAFSSQKTK E A
Sbjct: 121 KVACFSPGQMAAYVVVGLPTRIPPCSKSPFTSKGAGSKKTCAKDVFFSAFSSQKTKGETA 180

Query: 241 SLSFGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAHRIKRK- 284
           SLSFGSS GFPR+AV GAKP FFA +MR+K+ GKNTFSLCEVRKWR HSILWAHR+KRK 
Sbjct: 181 SLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKA 240

[Close]

BLAST of CcUC02G038170 vs. ExPASy TrEMBL
Match: A0A7L8ZUH8 (Ribosomal protein L2 OS=Malania oleifera OX=397392 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 6.2e-86
Identity = 187/305 (61.31%), Postives = 196/305 (64.26%), Query Frame = 0


Query: 61  MRQRQKGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGI---- 120
           MRQ Q+GRALRQFTLSTGKSAGRNSSG ITVFH+GGGSKRLQRRI LKRSTSSMGI    
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERI 60

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 61  EYDPNRSSRIAPVRWIEGVQLRRQRKCNTIEECAPPRKILEPTTTTIRGPFSFSSLPGKV 120

Query: 181 ----VACFSPGRMAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTCVKDVFFSAFSSQKTKR 240
               VACFSPG MAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTC KDVFFSA SS K K 
Sbjct: 121 DQRKVACFSPGLMAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTCAKDVFFSALSSPKAKG 180

Query: 241 EIASLSFGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAHRIK 284
             ASLSFGSSFGFPR+AV GAKP FFA +MR+KL GKN FSLCEVRKWR HSILWAHRIK
Sbjct: 181 --ASLSFGSSFGFPRIAVAGAKPAFFAPRMREKLRGKNMFSLCEVRKWRTHSILWAHRIK 240

[Close]

BLAST of CcUC02G038170 vs. ExPASy TrEMBL
Match: A0A5C2FSE6 (Ribosomal protein L2 OS=Spondias tuberosa OX=991123 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 8.1e-86
Identity = 183/300 (61.00%), Postives = 194/300 (64.67%), Query Frame = 0


Query: 61  MRQRQKGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGI---- 120
           MRQ Q+GRALRQFTLSTGKSAGRNSSG IT+FH+GGGSKRLQRRI LKRSTSS+GI    
Sbjct: 1   MRQSQEGRALRQFTLSTGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRSTSSIGIVERI 60

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 61  EYDPNRSSRIAPVRWIEGVQLRRQRKCNTIEEFAPPRKILEPTTTTIRGLFSFSSLSRKV 120

Query: 181 ----VACFSPGRMAAYVVVGLPTRMPPWSKSPFTSKGAGSKKTCVKDVFFSAFSSQKTKR 240
               V CFSPG MAAYVVVGLPTRMPPWSKSPFTSKGAG KKTC KDVFFSAFSS K K 
Sbjct: 121 DQRKVVCFSPGPMAAYVVVGLPTRMPPWSKSPFTSKGAGRKKTCAKDVFFSAFSSPKAKG 180

Query: 241 EIASLSFGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAHRIK 279
           E ASLSFGSS GFPR+AV GAKP FFA +MRDK+ GKNTFSLCEVRKWR HSILWAHRIK
Sbjct: 181 ETASLSFGSSCGFPRIAVAGAKPAFFAPRMRDKVRGKNTFSLCEVRKWRTHSILWAHRIK 240

[Close]

BLAST of CcUC02G038170 vs. TAIR 10
Match: ATMG00560.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 272.7 bits (696), Expect = 3.5e-73
Identity = 169/310 (54.52%), Postives = 181/310 (58.39%), Query Frame = 0


Query: 66  KGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGI--------- 125
           + RALRQFTLSTGKSAGRNSSG ITVFH+GGGSKRL RRI LKRSTSSMGI         
Sbjct: 5   RARALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPN 64

Query: 126 --------------------------------------------------------VACF 185
                                                                   VACF
Sbjct: 65  RSSQIAPVRWIKGGCQKKMNTIEKFAPPRKILEPTTNTISGLFSFSFLPGKVDKRKVACF 124

Query: 186 SPGRMAAYVVVGLPTRMPPW--SKSPFTSKGAGSKKTCVKDVFFSAFSSQKTKREIASLS 245
           SPG MAAYVVVGLPT MPP   SKS F SKGAGS KT VKDVFFSAFSS K KRE ASL+
Sbjct: 125 SPGLMAAYVVVGLPTGMPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSPKAKRETASLA 184

Query: 246 FGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAHRIKRK---- 284
           F SSFGFPR+AV GAKP FFA +MR K+ GK+TFSLCEV+K R HSILWAHRIK K    
Sbjct: 185 FASSFGFPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLS 244

[Close]

BLAST of CcUC02G038170 vs. TAIR 10
Match: AT2G07715.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 266.5 bits (680), Expect = 2.5e-71
Identity = 165/298 (55.37%), Postives = 176/298 (59.06%), Query Frame = 0


Query: 66  KGRALRQFTLSTGKSAGRNSSGHITVFHQGGGSKRLQRRIYLKRSTSSMGI--------- 125
           + RALRQFTLSTGKSAGRNSSG ITVFH+GGGSKRL RRI LKRSTSSMGI         
Sbjct: 5   RARALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPN 64

Query: 126 --------------------------------------------------------VACF 185
                                                                   VACF
Sbjct: 65  RSSQIAPVRWIKGGCQKKMNTIEKFAPPRKILEPTTNTISGLFSFSFLPGKVDKRKVACF 124

Query: 186 SPGRMAAYVVVGLPTRMPPW--SKSPFTSKGAGSKKTCVKDVFFSAFSSQKTKREIASLS 245
           SPG MAAYVVVGLPT MPP   SKS F SKGAGS KT VKDVFFSAFSS K KRE ASL+
Sbjct: 125 SPGLMAAYVVVGLPTGMPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSLKAKRETASLA 184

Query: 246 FGSSFGFPRVAVTGAKPTFFALQMRDKLIGKNTFSLCEVRKWRMHSILWAHRIKRK---- 272
           F SSFGFPR+AV GAKP FFA +MR K+ GK+TFSLCEV+K R HSILWAHRIK K    
Sbjct: 185 FASSFGFPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLS 244

The following BLAST results are available for this feature:

BLAST of CcUC02G038170 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_003587229.1	2.2e-93	65.99	ribosomal protein L2 [Citrullus lanatus] >ACV96645.1 ribosomal protein L2 [Citru...	[more]
YP_009913619.1	1.6e-88	62.83	ribosomal protein L2 [Luffa acutangula] >QLJ93019.1 ribosomal protein L2 [Luffa ...	[more]
YP_003587363.1	1.4e-87	61.92	ribosomal protein L2 [Cucurbita pepo] >ACV96687.1 ribosomal protein L2 [Cucurbit...	[more]
YP_010021233.1	1.3e-85	61.31	ribosomal protein L2 [Malania oleifera] >QOI73951.1 ribosomal protein L2 [Malani...	[more]
YP_009704608.1	1.7e-85	61.00	ribosomal protein L2 [Spondias tuberosa] >QEP09131.1 ribosomal protein L2 [Spond...	[more]

BLAST of CcUC02G038170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93311	4.9e-72	54.52	60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2 ...	[more]
P0C8K6	2.1e-54	48.96	60S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=...	[more]
Q2F969	2.1e-54	48.96	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 G...	[more]
P92812	2.1e-54	48.96	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947...	[more]
P26859	4.1e-18	34.02	60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL2...	[more]

BLAST of CcUC02G038170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
D5I399	1.1e-93	65.99	Ribosomal protein L2 OS=Citrullus lanatus OX=3654 GN=rpl2 PE=3 SV=1	[more]
A0A7D5XZ32	7.9e-89	62.83	Ribosomal protein L2 OS=Luffa acutangula OX=56866 GN=rpl2 PE=3 SV=1	[more]
D5I3E9	6.7e-88	61.92	Ribosomal protein L2 OS=Cucurbita pepo OX=3663 GN=rpl2 PE=3 SV=1	[more]
A0A7L8ZUH8	6.2e-86	61.31	Ribosomal protein L2 OS=Malania oleifera OX=397392 GN=rpl2 PE=3 SV=1	[more]
A0A5C2FSE6	8.1e-86	61.00	Ribosomal protein L2 OS=Spondias tuberosa OX=991123 GN=rpl2 PE=3 SV=1	[more]

BLAST of CcUC02G038170 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00560.1	3.5e-73	54.52	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G07715.1	2.5e-71	55.37	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 48..122 e-value: 5.0E-11 score: 44.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 240..265
None	No IPR available	PANTHER	PTHR13691:SF44	60S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL-RELATED	coord: 117..262 coord: 63..117
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 117..262 coord: 63..117
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 52..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G038170.1	CcUC02G038170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome