CcUC02G037970 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G037970
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Histone H2A
Location	CicolChr02: 33421844 .. 33422662 (+)
RNA-Seq Expression	CcUC02G037970
Synteny	CcUC02G037970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTGCGGTATAAAATCCACAACTCTCAAGGACGATCCCATTCAAACCTGCTTCTCACTCAATCAACACCGATAACTCTCCGGCGAGCAACACCTTCGTTTTCTTCACAACAAAGCATTCAACCAGTATCCAATGGAAACCGGCGGCAAGGCAAAGAAAGGCGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCAGTTTCTCGCTCCGTCAAAGCCGGTTTACAGTTCCCCGTCGGCCGTATCGCTCGTTATCTGAAGAACGGAAGATACGCACAGCGTGTCGGCACCGGCGCTCCGGTCTACTTAGCCGCAGTGATGGAGTACCTAGCCGCTGAGGTAACTGAATCGTCATTTTCCTCTTCTTCTTCATCTCTCGTTTTCGAATCGCCATTGTATTGATCTTCTGTGGATGCGCTTTGTAGGTTCTTGAGTTGGCTGGAAATGCGGCTAGAGATAACAAGAAGAACAGGATCATTCCAAGGCACGTTCTATTGGCGATTAGGAACGACGAAGAACTCGGAAAGTTGCTGGCCGGCGTAACTATTGCTAGTGGTGGTGTTCTTCCGAATATCAACCCGGTTCTGTTGCCGAAGAAGACGGATAAGGCTACGAAAGAGCCGAAATCTCCATCGAAGGGCGGGAAGTCTCCATCGAAGTCGGCCTGAAAAGGTTGGATTAATCGGGTTAGGGTTGGATGAATCTGTAATTTATGATCGTCTTAGGGATTTGGAATGCATACTGTATTCGATATGGCTATTTTACGAATTTACAAGCAAGGAATCAATCAGATGACTTGTTCTGTTCCTCATCTTCATG

mRNA sequence

CACTGCGGTATAAAATCCACAACTCTCAAGGACGATCCCATTCAAACCTGCTTCTCACTCAATCAACACCGATAACTCTCCGGCGAGCAACACCTTCGTTTTCTTCACAACAAAGCATTCAACCAGTATCCAATGGAAACCGGCGGCAAGGCAAAGAAAGGCGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCAGTTTCTCGCTCCGTCAAAGCCGGTTTACAGTTCCCCGTCGGCCGTATCGCTCGTTATCTGAAGAACGGAAGATACGCACAGCGTGTCGGCACCGGCGCTCCGGTCTACTTAGCCGCAGTGATGGAGTACCTAGCCGCTGAGGTTCTTGAGTTGGCTGGAAATGCGGCTAGAGATAACAAGAAGAACAGGATCATTCCAAGGCACGTTCTATTGGCGATTAGGAACGACGAAGAACTCGGAAAGTTGCTGGCCGGCGTAACTATTGCTAGTGGTGGTGTTCTTCCGAATATCAACCCGGTTCTGTTGCCGAAGAAGACGGATAAGGCTACGAAAGAGCCGAAATCTCCATCGAAGGGCGGGAAGTCTCCATCGAAGTCGGCCTGAAAAGGTTGGATTAATCGGGTTAGGGTTGGATGAATCTGTAATTTATGATCGTCTTAGGGATTTGGAATGCATACTGTATTCGATATGGCTATTTTACGAATTTACAAGCAAGGAATCAATCAGATGACTTGTTCTGTTCCTCATCTTCATG

Coding sequence (CDS)

ATGGAAACCGGCGGCAAGGCAAAGAAAGGCGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCAGTTTCTCGCTCCGTCAAAGCCGGTTTACAGTTCCCCGTCGGCCGTATCGCTCGTTATCTGAAGAACGGAAGATACGCACAGCGTGTCGGCACCGGCGCTCCGGTCTACTTAGCCGCAGTGATGGAGTACCTAGCCGCTGAGGTTCTTGAGTTGGCTGGAAATGCGGCTAGAGATAACAAGAAGAACAGGATCATTCCAAGGCACGTTCTATTGGCGATTAGGAACGACGAAGAACTCGGAAAGTTGCTGGCCGGCGTAACTATTGCTAGTGGTGGTGTTCTTCCGAATATCAACCCGGTTCTGTTGCCGAAGAAGACGGATAAGGCTACGAAAGAGCCGAAATCTCCATCGAAGGGCGGGAAGTCTCCATCGAAGTCGGCCTGA

Protein sequence

METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYLAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPVLLPKKTDKATKEPKSPSKGGKSPSKSA

Homology

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BLAST of CcUC02G037970 vs. NCBI nr
Match: XP_008448380.1 (PREDICTED: histone H2A [Cucumis melo])

HSP 1 Score: 270.8 bits (691), Expect = 7.1e-69
Identity = 145/149 (97.32%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYLA 60
           METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLK GRYAQRVGTGAPVYLA
Sbjct: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKGGKSPSKSA 150
           PVLLPKKTDK TKEPKSPSK GKSPSK+A
Sbjct: 121 PVLLPKKTDKGTKEPKSPSKAGKSPSKAA 149

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BLAST of CcUC02G037970 vs. NCBI nr
Match: XP_038900828.1 (histone H2A-like [Benincasa hispida])

HSP 1 Score: 267.7 bits (683), Expect = 6.0e-68
Identity = 142/149 (95.30%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYLA 60
           METGGKAKKGAGGRRGGEKKK+VSRSV+AGLQFPVGRIARYLK+GRYA+RVGTGAPVYLA
Sbjct: 1   METGGKAKKGAGGRRGGEKKKSVSRSVRAGLQFPVGRIARYLKHGRYARRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNK+NRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKRNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKGGKSPSKSA 150
           PVLLPKKTDKATKEPKSPSKG KSPSK+A
Sbjct: 121 PVLLPKKTDKATKEPKSPSKGAKSPSKAA 149

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BLAST of CcUC02G037970 vs. NCBI nr
Match: XP_023006960.1 (histone H2A-like [Cucurbita maxima])

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-66
Identity = 140/149 (93.96%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYLA 60
           ME   KAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLK GRY+QRVGTGAPVYLA
Sbjct: 1   MEASAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKGGKSPSKSA 150
           P+LLPKKTDKA KEPKSPSKGGKSPSKS+
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149

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BLAST of CcUC02G037970 vs. NCBI nr
Match: XP_022943937.1 (histone H2A [Cucurbita moschata] >XP_023512023.1 histone H2A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-66
Identity = 141/149 (94.63%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYLA 60
           ME  GKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLK GRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKGGKSPSKSA 150
           PVLLPKKTDKA KEPKSPSK GKSPSK+A
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKAA 149

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BLAST of CcUC02G037970 vs. NCBI nr
Match: XP_022947502.1 (histone H2A-like [Cucurbita moschata] >KAG6605479.1 hypothetical protein SDJN03_02796, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035421.1 hypothetical protein SDJN02_02217 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-66
Identity = 140/149 (93.96%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYLA 60
           ME   KAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLK GRY+QRVGTGAPVYLA
Sbjct: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKGGKSPSKSA 150
           P+LLPKKTDKA KEPKSPSKGGKSPSKS+
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149

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BLAST of CcUC02G037970 vs. ExPASy Swiss-Prot
Match: P19177 (Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.3e-62
Identity = 128/149 (85.91%), Postives = 137/149 (91.95%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYLA 60
           MET GKAKKG GGR+GG +KK+V+RSVKAGLQFPVGRI RYLK GRYAQRVGTGAPVYLA
Sbjct: 1   METAGKAKKGFGGRKGGPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AV+EYLAAEVLELAGNAARDNKK RIIPRH+LLA+RNDEELGKLLAGVT A GGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNIN 120

Query: 121 PVLLPKKT-DKATKEPKSPSKGGKSPSKS 149
           PVLLPKKT +KA KEPKSPSK GKSP K+
Sbjct: 121 PVLLPKKTAEKAAKEPKSPSKAGKSPKKA 149

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BLAST of CcUC02G037970 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.1e-59
Identity = 127/153 (83.01%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR-GGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYL 60
           M+TG K KKGAG R+ GG KKK VSRSVKAGLQFPVGRI R+LK GRYAQRVG+GAPVYL
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKTDK----ATKEPKSPSKGGKSPSKS 149
           NPVLLPKK +K    ATKEPKSP+K  KSP K+
Sbjct: 121 NPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

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BLAST of CcUC02G037970 vs. ExPASy Swiss-Prot
Match: Q2HU68 (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 6.9e-59
Identity = 120/148 (81.08%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYLA 60
           M+   K KKGAGGR+GG +KK+V+RS +AGLQFPVGRI RYLK GRYAQRVGTGAPVYLA
Sbjct: 1   MDASTKTKKGAGGRKGGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKGGKSPSKS 149
           P+LLPKK +KA    KSPSK  KSP K+
Sbjct: 121 PILLPKKNEKAATTTKSPSKATKSPKKA 148

[Close]

BLAST of CcUC02G037970 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.0e-57
Identity = 123/153 (80.39%), Postives = 137/153 (89.54%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR-GGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYL 60
           M+   K KKGAGGR+ GG +KK+V+RS++AGLQFPVGRI RYLK GRYAQRVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKTDKA---TKEPKSPS-KGGKSPSKS 149
           NPVLLPKKT+++   +KEPKSP  K GKSP K+
Sbjct: 121 NPVLLPKKTERSNTVSKEPKSPKPKAGKSPKKA 153

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BLAST of CcUC02G037970 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.0e-57
Identity = 124/153 (81.05%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR--GGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVY 60
           M++G K KKGA GRR  GG KKK VSRSVK+GLQFPVGRI RYLK GRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPN 120
           LAAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIA GGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKTDKA---TKEPKSPSKGGKSPSKS 149
           INP+LLPKK++KA   TK PKSPSK  KSP KS
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

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BLAST of CcUC02G037970 vs. ExPASy TrEMBL
Match: A0A1S3BK65 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490586 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.4e-69
Identity = 145/149 (97.32%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYLA 60
           METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLK GRYAQRVGTGAPVYLA
Sbjct: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKGGKSPSKSA 150
           PVLLPKKTDK TKEPKSPSK GKSPSK+A
Sbjct: 121 PVLLPKKTDKGTKEPKSPSKAGKSPSKAA 149

[Close]

BLAST of CcUC02G037970 vs. ExPASy TrEMBL
Match: A0A6J1L1N2 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111499596 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.5e-67
Identity = 140/149 (93.96%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYLA 60
           ME   KAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLK GRY+QRVGTGAPVYLA
Sbjct: 1   MEASAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKGGKSPSKSA 150
           P+LLPKKTDKA KEPKSPSKGGKSPSKS+
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149

[Close]

BLAST of CcUC02G037970 vs. ExPASy TrEMBL
Match: A0A6J1FUE6 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111448508 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.5e-67
Identity = 141/149 (94.63%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYLA 60
           ME  GKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLK GRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKGGKSPSKSA 150
           PVLLPKKTDKA KEPKSPSK GKSPSK+A
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKAA 149

[Close]

BLAST of CcUC02G037970 vs. ExPASy TrEMBL
Match: A0A6J1G6M6 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111451351 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.5e-67
Identity = 140/149 (93.96%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYLA 60
           ME   KAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLK GRY+QRVGTGAPVYLA
Sbjct: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKGGKSPSKSA 150
           P+LLPKKTDKA KEPKSPSKGGKSPSKS+
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149

[Close]

BLAST of CcUC02G037970 vs. ExPASy TrEMBL
Match: A0A6J1J904 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111484538 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66
Identity = 141/149 (94.63%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYLA 60
           ME  GKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLK GRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKGGKSPSKSA 150
           PVLLPKKTDKA KEPKSPSK GKSPSK A
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKVA 149

[Close]

BLAST of CcUC02G037970 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 224.2 bits (570), Expect = 7.1e-59
Identity = 124/153 (81.05%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR--GGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVY 60
           M++G K KKGA GRR  GG KKK VSRSVK+GLQFPVGRI RYLK GRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPN 120
           LAAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIA GGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKTDKA---TKEPKSPSKGGKSPSKS 149
           INP+LLPKK++KA   TK PKSPSK  KSP KS
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of CcUC02G037970 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 210.7 bits (535), Expect = 8.1e-55
Identity = 124/177 (70.06%), Postives = 134/177 (75.71%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR--GGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVY 60
           M++G K KKGA GRR  GG KKK VSRSVK+GLQFPVGRI RYLK GRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAV+EYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 IRNDEELGKLLAGVTIASGGVLPNINPVLLPKKTDKA---TKEPKSPSKGGKSPSKS 149
           +RNDEELG LL GVTIA GGVLPNINP+LLPKK++KA   TK PKSPSK  KSP KS
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of CcUC02G037970 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 201.4 bits (511), Expect = 4.9e-52
Identity = 109/143 (76.22%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 6   KAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYLAAVMEY 65
           K  +GAGGR+GG++KK+VS+SVKAGLQFPVGRIARYLK GRYA R G+GAPVYLAAV+EY
Sbjct: 9   KPTRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEY 68

Query: 66  LAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPVLLP 125
           LAAEVLELAGNAARDNKKNRI PRH+ LAIRNDEELG+LL GVTIASGGVLPNINPVLLP
Sbjct: 69  LAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLP 128

Query: 126 KKTDKATKEPKSPSKGGKSPSKS 149
           KK+  ++ + +  S   KSP K+
Sbjct: 129 KKSTASSSQAEKAS-ATKSPKKA 150

[Close]

BLAST of CcUC02G037970 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 198.4 bits (503), Expect = 4.2e-51
Identity = 112/149 (75.17%), Postives = 126/149 (84.56%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR--GGEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVY 60
           ME+ GK KK  GGR+  G  K K+VS+S+KAGLQFPVGRI R+LK GRYAQR+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPN 120
           +AAV+EYLAAEVLELAGNAARDNKK+RIIPRH+LLAIRNDEELGKLL+GVTIA GGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKT------DKATKEP-KSPSK 141
           IN VLLPKK+      +KATK P KSP K
Sbjct: 121 INSVLLPKKSATKPAEEKATKSPVKSPKK 149

[Close]

BLAST of CcUC02G037970 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-44
Identity = 88/112 (78.57%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 17  GEKKKAVSRSVKAGLQFPVGRIARYLKNGRYAQRVGTGAPVYLAAVMEYLAAEVLELAGN 76
           G  KKA +RS KAGLQFPVGRIAR+LK G+YA+RVG GAPVYLAAV+EYLAAEVLELAGN
Sbjct: 11  GSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGN 70

Query: 77  AARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPVLLPKKT 129
           AARDNKK RI+PRH+ LA+RNDEEL KLL  VTIA+GGV+PNI+ +LLPKKT
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

The following BLAST results are available for this feature:

BLAST of CcUC02G037970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448380.1	7.1e-69	97.32	PREDICTED: histone H2A [Cucumis melo]	[more]
XP_038900828.1	6.0e-68	95.30	histone H2A-like [Benincasa hispida]	[more]
XP_023006960.1	1.1e-66	93.96	histone H2A-like [Cucurbita maxima]	[more]
XP_022943937.1	1.1e-66	94.63	histone H2A [Cucurbita moschata] >XP_023512023.1 histone H2A [Cucurbita pepo sub...	[more]
XP_022947502.1	1.1e-66	93.96	histone H2A-like [Cucurbita moschata] >KAG6605479.1 hypothetical protein SDJN03_...	[more]

BLAST of CcUC02G037970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19177	2.3e-62	85.91	Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1	[more]
Q9M531	3.1e-59	83.01	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
Q2HU68	6.9e-59	81.08	Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P...	[more]
Q2HU65	1.0e-57	80.39	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]
Q9LZ46	1.0e-57	81.05	Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1	[more]

BLAST of CcUC02G037970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BK65	3.4e-69	97.32	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490586 PE=3 SV=1	[more]
A0A6J1L1N2	5.5e-67	93.96	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111499596 PE=3 SV=1	[more]
A0A6J1FUE6	5.5e-67	94.63	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111448508 PE=3 SV=1	[more]
A0A6J1G6M6	5.5e-67	93.96	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111451351 PE=3 SV=1	[more]
A0A6J1J904	1.2e-66	94.63	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111484538 PE=3 SV=1	[more]

BLAST of CcUC02G037970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	7.1e-59	81.05	histone H2A 12	[more]
AT5G02560.2	8.1e-55	70.06	histone H2A 12	[more]
AT5G27670.1	4.9e-52	76.22	histone H2A 7	[more]
AT5G59870.1	4.2e-51	75.17	histone H2A 6	[more]
AT1G51060.1	1.7e-44	78.57	histone H2A 10	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 50..65 score: 81.37 coord: 65..78 score: 89.46 coord: 21..43 score: 71.22 coord: 79..93 score: 73.78 coord: 107..125 score: 76.19
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 10..130 e-value: 2.8E-79 score: 279.4
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 19..127 e-value: 2.22845E-67 score: 197.943
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 6..137 e-value: 4.7E-64 score: 216.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 24..127
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 16..96 e-value: 1.7E-13 score: 51.1
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 99..133 e-value: 4.9E-19 score: 67.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..149
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 8..143
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 8..143
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 29..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G037970.1	CcUC02G037970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity