CcUC02G037020 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G037020
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	30S ribosomal protein S18
Location	CicolChr02: 32728239 .. 32730529 (+)
RNA-Seq Expression	CcUC02G037020
Synteny	CcUC02G037020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAACCGTTCAGGTTGCTTTGCGAACCCTTGGCGGTGGCCTATCGCGGAGATTAAAGCAACCTTATGTGCTCAGAAACCTTTCCACAAACGCCGCTCGTGGTAATTTCCACTTGTTTTGGATTTCAATCCATGAATTTATGATTTATACTGTGATTCCTGAAGTTCTTTTCGACTTGAGCGGAAATTCGTCAAGTTTATTCTAAGCTAATGTTGCTCAAATGTGTTTCCGTTTGGATATTGGTCTTCCGAGGTTCTCATGTTTGGTTGTATAAATGATAATGTGCTTCAAGGCATGTATTTTACAACTTTCGTGTTTAAAACTTTTAAACAGATAGTGGATTTGATGATGATAAGGGAAAACCTGATTCGTTTGAGTCTGCTGATGACTTCGAACGTCGGATATTTGGGGGTGTTTCTTCGGGCGATTCTGGAAATGAGGCTTTCTTTGAGAAGCTTGATAGACTTGGCAAACCTCGTGAAAGAATAGGTTCGAGATTGAGTGGAGGAAACAATTTTCATTCGTTCTATGGTCTTGAAGATAATCTTAACACGCTATCAGATGGGATGGATGGCAAGTTGAAGAAAGCTTCCACTTATTTTGAGTTTGATCCCGAGGAAATAGCAAAAGATGATTATACTTTCAGAGCAGATATGTCTTTTAAGCCTGGATCAACATACGAAACCAAGGCATGTAGCTGAGCAACTAATATATTTTTTTTATACTTGTTAAGAACAAACATTTATCGTTCATATAGCTTCTATTTTTTACTATACTGATTACATGACGCCAACCGAGCATACCTAGGCACTTATTACCATAAAAAAATTATAATCACATCACCTAAAAAATTACTTTTACTTGAACCAATCCATGTTTCCTTCAAGAAGCATATTAGGTGAGTTTTATGGCCAACTGTGTCTGGATGGTTACATTCAGATTGGATGATCTGTGATGGGTTTGAACTTCACTATATAATCATTTTGCACCTTCTGTAGATGATTTTGTGTTACATTACCATTATTCTAAGTACTTTAGAATGTATACAGGATCTGGATCTAAGAAAGCCAGGTGTACGTAAGCCTCCCAAAAGGGTTGAGTTTCAGGTGAAAACAGAGGAGGTCTTAAGAAAAGCTGATTTCAGGGTGAGCATTCCTGAATTTCATTTACCTTGCCATTTTACTAAATCCCCTTTCTCATTTATTATGCGACTAGGACTAAAACATGGTCGAAATTAGTGGTGTGGTAACATACCTTTTGATCAGTTGCGATCGTCTCTCGTAGCAACATAGTTAAATATGGAATATCTTATGGTATGAACTTCTCATATATTAAACATTATAGCTTATGAACTAAAAGAAAAGAAGCGGCACAAGCTTAGAAAGAAATCTTTGATTTTGAATCGAGTGAATTTGAGTAGTTTAGAAATTTCAATGTATAAGAAACGATAAGTTGGAATATGGTTGTTTACTGCTGGTTTTCTGCACAGTTATATTTAAGAAGTCTGGCAGGGAGTATACATCTGGTTTTTTTAATCAACACTGTCCATCCTAGAACAAAAGGAGCTGTCCGGTTAGAAATTTTGTCTGTCATAATAGACATAGTGTAGTTCATAAGTAGCCATGGATCATCAAACTTTTTATATGAATTGCAGTTAAATCAATTCACGTGTTTCTGATCTGGACAGTGTCCGGTTGTATTTTTCAATGAAGTAAGATCATGCAATGGCCTCTTAAGAGTTTCTAACAGTTGCACGTTTGCAACATTGTCTGGTCATGGAATTATTTCTTTCATTTTCAGTGCTACCAAAAATTAGTCTGGCCATAAGTTTGTATAATATAGGGTACCTGTCCAAACAACTAAAATAATTGACGGGAGTTAAATTGTATTTTATGTCTCTTATCCCTGCTGTAGGCATTTCTAACAAGCGAGTAGTTGTTTGCAGAATGTTAGGTTTCTGGCGAACTTTATAACTGATGCCGGGATCATTATCAAGAGGAGCAAGGTAAACTTCCTGAACAAAAATCAGGTTTTGAACAAGTTGAATCATCAACCTTTGTCTTATGTTATCACTTCAACACTTCACAGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTTGCGCGCGAGATCAAAACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACGAAATCATTTATTTTTGGCAGAACCATGGAAAATCTTGATAAGGACTTCGAGTATGAAGTTTTCGATGAAAATGCTGATGCAGATGGAGGTCGCCCGCTTGGATCCTAA

mRNA sequence

ATGAGAACCGTTCAGGTTGCTTTGCGAACCCTTGGCGGTGGCCTATCGCGGAGATTAAAGCAACCTTATGTGCTCAGAAACCTTTCCACAAACGCCGCTCGTGATAGTGGATTTGATGATGATAAGGGAAAACCTGATTCGTTTGAGTCTGCTGATGACTTCGAACGTCGGATATTTGGGGGTGTTTCTTCGGGCGATTCTGGAAATGAGGCTTTCTTTGAGAAGCTTGATAGACTTGGCAAACCTCGTGAAAGAATAGGTTCGAGATTGAGTGGAGGAAACAATTTTCATTCGTTCTATGGTCTTGAAGATAATCTTAACACGCTATCAGATGGGATGGATGGCAAGTTGAAGAAAGCTTCCACTTATTTTGAGTTTGATCCCGAGGAAATAGCAAAAGATGATTATACTTTCAGAGCAGATATGTCTTTTAAGCCTGGATCAACATACGAAACCAAGGATCTGGATCTAAGAAAGCCAGGTGTACGTAAGCCTCCCAAAAGGGTTGAGTTTCAGGTGAAAACAGAGGAGGTCTTAAGAAAAGCTGATTTCAGGAATGTTAGGTTTCTGGCGAACTTTATAACTGATGCCGGGATCATTATCAAGAGGAGCAAGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTTGCGCGCGAGATCAAAACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACGAAATCATTTATTTTTGGCAGAACCATGGAAAATCTTGATAAGGACTTCGAGTATGAAGTTTTCGATGAAAATGCTGATGCAGATGGAGGTCGCCCGCTTGGATCCTAA

Coding sequence (CDS)

ATGAGAACCGTTCAGGTTGCTTTGCGAACCCTTGGCGGTGGCCTATCGCGGAGATTAAAGCAACCTTATGTGCTCAGAAACCTTTCCACAAACGCCGCTCGTGATAGTGGATTTGATGATGATAAGGGAAAACCTGATTCGTTTGAGTCTGCTGATGACTTCGAACGTCGGATATTTGGGGGTGTTTCTTCGGGCGATTCTGGAAATGAGGCTTTCTTTGAGAAGCTTGATAGACTTGGCAAACCTCGTGAAAGAATAGGTTCGAGATTGAGTGGAGGAAACAATTTTCATTCGTTCTATGGTCTTGAAGATAATCTTAACACGCTATCAGATGGGATGGATGGCAAGTTGAAGAAAGCTTCCACTTATTTTGAGTTTGATCCCGAGGAAATAGCAAAAGATGATTATACTTTCAGAGCAGATATGTCTTTTAAGCCTGGATCAACATACGAAACCAAGGATCTGGATCTAAGAAAGCCAGGTGTACGTAAGCCTCCCAAAAGGGTTGAGTTTCAGGTGAAAACAGAGGAGGTCTTAAGAAAAGCTGATTTCAGGAATGTTAGGTTTCTGGCGAACTTTATAACTGATGCCGGGATCATTATCAAGAGGAGCAAGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTTGCGCGCGAGATCAAAACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACGAAATCATTTATTTTTGGCAGAACCATGGAAAATCTTGATAAGGACTTCGAGTATGAAGTTTTCGATGAAAATGCTGATGCAGATGGAGGTCGCCCGCTTGGATCCTAA

Protein sequence

MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSGDSGNEAFFEKLDRLGKPRERIGSRLSGGNNFHSFYGLEDNLNTLSDGMDGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETKDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDENADADGGRPLGS

Homology

[Close]

BLAST of CcUC02G037020 vs. NCBI nr
Match: XP_022986919.1 (uncharacterized protein LOC111484513 [Cucurbita maxima])

HSP 1 Score: 478.4 bits (1230), Expect = 4.1e-131
Identity = 247/271 (91.14%), Postives = 255/271 (94.10%), Query Frame = 0


Query: 1   MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFG 60
           M TVQVALRTLGGGLSRR KQP VLRNLSTNAARDSGF DDKGKPDSFESADDFERRIFG
Sbjct: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGF-DDKGKPDSFESADDFERRIFG 60

Query: 61  GVSSGDSGNEAFFEKLDRLGKPRERIGSRLSGGNNFHSFYGLEDNLNTLSDGMDGKLKKA 120
           GVS+GDSGN+AFFEKLDRLGKPRERIGSRLSGGNNF + YGL+DNLNTLSDGMDGKLKKA
Sbjct: 61  GVSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKA 120

Query: 121 STYFEFDPEEIAKDDYTFRADMSFKPGSTYETKDLDLRKPGVRKPPKRVEFQVKTEEVLR 180
           STYFEFD EEIAKDDYTFRADMSFKPGSTYE KDLDL KPGVRKPPKRVEFQV TEEVLR
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 181 KADFRNVRFLANFITDAGIIIKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFI 240
           KADFRNVRFLANFITDAGIIIKRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+
Sbjct: 181 KADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFV 240

Query: 241 FGRTMENLDKDFEYEVFDENADADGGRPLGS 272
           FG+TME+LDKD+EYEVFD N   DGG PLGS
Sbjct: 241 FGKTMEDLDKDYEYEVFDNN---DGGHPLGS 267

[Close]

BLAST of CcUC02G037020 vs. NCBI nr
Match: XP_022943865.1 (uncharacterized protein LOC111448465 [Cucurbita moschata])

HSP 1 Score: 478.4 bits (1230), Expect = 4.1e-131
Identity = 247/271 (91.14%), Postives = 255/271 (94.10%), Query Frame = 0


Query: 1   MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFG 60
           MRTVQVALRTLGGGLSRR KQP VLRNLSTNAARDSGF DDKGKPDSFESADDFERRIFG
Sbjct: 1   MRTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGF-DDKGKPDSFESADDFERRIFG 60

Query: 61  GVSSGDSGNEAFFEKLDRLGKPRERIGSRLSGGNNFHSFYGLEDNLNTLSDGMDGKLKKA 120
           GVS+GDSGN+AFFEKLDR+GKPRERIGSRLSGGNNF S YGL+DNLNTLSDGMDGKLKKA
Sbjct: 61  GVSTGDSGNDAFFEKLDRIGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKA 120

Query: 121 STYFEFDPEEIAKDDYTFRADMSFKPGSTYETKDLDLRKPGVRKPPKRVEFQVKTEEVLR 180
           STYFEFD EEIAKDDYTFRADMSFKPGSTYE KDLDL KPGVRKPPKRVEFQV TEEVLR
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEVKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 181 KADFRNVRFLANFITDAGIIIKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFI 240
           KADFRNVRFLANFITDAGIIIKRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+
Sbjct: 181 KADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFV 240

Query: 241 FGRTMENLDKDFEYEVFDENADADGGRPLGS 272
           FG+TME+LDKD+EYEVFD N   DG  PLGS
Sbjct: 241 FGKTMEDLDKDYEYEVFDNN---DGEHPLGS 267

[Close]

BLAST of CcUC02G037020 vs. NCBI nr
Match: XP_023512473.1 (uncharacterized protein LOC111777218 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 478.4 bits (1230), Expect = 4.1e-131
Identity = 248/271 (91.51%), Postives = 255/271 (94.10%), Query Frame = 0


Query: 1   MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFG 60
           MRTVQVALRTLG GLSRR KQP VLRNLSTNAARDSGF DDKGKPDSFESADDFERRIFG
Sbjct: 1   MRTVQVALRTLGRGLSRRFKQPSVLRNLSTNAARDSGF-DDKGKPDSFESADDFERRIFG 60

Query: 61  GVSSGDSGNEAFFEKLDRLGKPRERIGSRLSGGNNFHSFYGLEDNLNTLSDGMDGKLKKA 120
           GVS+GDSGN+AFFEKLDRLGKPRERIGSRLSGGNNF S YGL+DNLNTLSDGMDGKLKKA
Sbjct: 61  GVSTGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKA 120

Query: 121 STYFEFDPEEIAKDDYTFRADMSFKPGSTYETKDLDLRKPGVRKPPKRVEFQVKTEEVLR 180
           STYFEFD EEIAKDDYTFRADMSFKPGSTYE KDLDL KPGVRKPPKRVEFQV TEEVLR
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEVKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 181 KADFRNVRFLANFITDAGIIIKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFI 240
           KADFRNVRFLANFITDAGIIIKRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+
Sbjct: 181 KADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFV 240

Query: 241 FGRTMENLDKDFEYEVFDENADADGGRPLGS 272
           FG+TME+LDKD+EYEVFD N   DGG PLGS
Sbjct: 241 FGKTMEDLDKDYEYEVFDNN---DGGYPLGS 267

[Close]

BLAST of CcUC02G037020 vs. NCBI nr
Match: KAG6570652.1 (hypothetical protein SDJN03_29567, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 478.0 bits (1229), Expect = 5.3e-131
Identity = 247/271 (91.14%), Postives = 255/271 (94.10%), Query Frame = 0


Query: 1   MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFG 60
           MRTVQVALRTLGGGLSRR KQP VLRNLSTNAARDSGF DDKGKPDSFESADDFERRIFG
Sbjct: 1   MRTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGF-DDKGKPDSFESADDFERRIFG 60

Query: 61  GVSSGDSGNEAFFEKLDRLGKPRERIGSRLSGGNNFHSFYGLEDNLNTLSDGMDGKLKKA 120
           GVS+GD GN+AFFEKLDR+GKPRERIGSRLSGGNNF S YGL+DNLNTLSDGMDGKLKKA
Sbjct: 61  GVSTGDYGNDAFFEKLDRIGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKA 120

Query: 121 STYFEFDPEEIAKDDYTFRADMSFKPGSTYETKDLDLRKPGVRKPPKRVEFQVKTEEVLR 180
           STYFEFD EEIAKDDYTFRADMSFKPGSTYE KDLDL KPGVRKPPKRVEFQV TEEVLR
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEVKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 181 KADFRNVRFLANFITDAGIIIKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFI 240
           KADFRNVRFLANFITDAGIIIKRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+
Sbjct: 181 KADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFV 240

Query: 241 FGRTMENLDKDFEYEVFDENADADGGRPLGS 272
           FG+TME+LDKD+EYEVFD N   DG RPLGS
Sbjct: 241 FGKTMEDLDKDYEYEVFDNN---DGERPLGS 267

[Close]

BLAST of CcUC02G037020 vs. NCBI nr
Match: KAG7010502.1 (rpsR [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 473.0 bits (1216), Expect = 1.7e-129
Identity = 246/271 (90.77%), Postives = 255/271 (94.10%), Query Frame = 0


Query: 1   MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFG 60
           MRTVQVALRTLGGGLSRR KQP VLRNLSTNAARDSGF DDKGKPDSFESADDFERRIFG
Sbjct: 1   MRTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGF-DDKGKPDSFESADDFERRIFG 60

Query: 61  GVSSGDSGNEAFFEKLDRLGKPRERIGSRLSGGNNFHSFYGLEDNLNTLSDGMDGKLKKA 120
           GVS+GDSGN+AFFEKLDR+GKPRERIGSRLSGGNNF S YGL+DNLNTLSDGMDGKLKKA
Sbjct: 61  GVSTGDSGNDAFFEKLDRIGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKA 120

Query: 121 STYFEFDPEEIAKDDYTFRADMSFKPGSTYETKDLDLRKPGVRKPPKRVEFQVKTEEVLR 180
           STYFEFD EEIAKDDYTFRADMSFKPGSTYE  DLDL KPGVRKPPKRVEFQV TEEVLR
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYE--DLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 181 KADFRNVRFLANFITDAGIIIKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFI 240
           KADFRNVRFLANFITDAGIIIKRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+
Sbjct: 181 KADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFV 240

Query: 241 FGRTMENLDKDFEYEVFDENADADGGRPLGS 272
           FG+TME+LDKD+EYE+FD N   DG RPLGS
Sbjct: 241 FGKTMEDLDKDYEYEIFDNN---DGERPLGS 265

[Close]

BLAST of CcUC02G037020 vs. ExPASy Swiss-Prot
Match: P62659 (30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) OX=262724 GN=rpsR PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07
Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 152 TKDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKTGISAK 211
           TK+   +K   R+P ++ + +    E     D+RNV  L  F+++ G I+ R +TG+SAK
Sbjct: 3   TKNAKPKKEAQRRPSRKAKVKATLGE-FDLRDYRNVEVLKRFLSETGKILPRRRTGLSAK 62

Query: 212 AQRKVAREIKTARAFGLMPFT 233
            QR +A+ IK AR  GL+PFT
Sbjct: 63  EQRILAKTIKRARILGLLPFT 82

[Close]

BLAST of CcUC02G037020 vs. ExPASy Swiss-Prot
Match: Q5SLQ0 (30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=rpsR PE=1 SV=3)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07
Identity = 32/81 (39.51%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 152 TKDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKTGISAK 211
           TK+   +K   R+P ++ + +    E     D+RNV  L  F+++ G I+ R +TG+SAK
Sbjct: 3   TKNAKPKKEAQRRPSRKAKVKATLGE-FDLRDYRNVEVLKRFLSETGKILPRRRTGLSAK 62

Query: 212 AQRKVAREIKTARAFGLMPFT 233
            QR +A+ IK AR  GL+PFT
Sbjct: 63  EQRILAKTIKRARILGLLPFT 82

[Close]

BLAST of CcUC02G037020 vs. ExPASy Swiss-Prot
Match: P80382 (30S ribosomal protein S18 OS=Thermus thermophilus OX=274 GN=rpsR PE=1 SV=3)

HSP 1 Score: 57.0 bits (136), Expect = 3.8e-07
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 152 TKDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKTGISAK 211
           TK+   +K   R+P ++ + +    E     D+RNV  L  F+++ G I+ R +TG+S K
Sbjct: 3   TKNAKPKKEAQRRPSRKAKVKATLGE-FDLRDYRNVEVLKRFLSETGKILPRRRTGLSGK 62

Query: 212 AQRKVAREIKTARAFGLMPFT 233
            QR +A+ IK AR  GL+PFT
Sbjct: 63  EQRILAKTIKRARILGLLPFT 82

[Close]

BLAST of CcUC02G037020 vs. ExPASy Swiss-Prot
Match: C1CXK0 (30S ribosomal protein S18 OS=Deinococcus deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115) OX=546414 GN=rpsR PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-06
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 158 RKP---GVRKP--PKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKTGISAKA 217
           RKP   G ++P  PK   F +   E+    D+++V+ L  F++D G I+ R +TG+SAK 
Sbjct: 10  RKPRGKGPKRPRKPKVDPFSIGELEI---TDYKDVKMLRRFVSDTGKILPRRRTGLSAKH 69

Query: 218 QRKVAREIKTARAFGLMPFT 233
           QR++A+ IK AR   L+P+T
Sbjct: 70  QRRIAQTIKVARQLALLPYT 86

[Close]

BLAST of CcUC02G037020 vs. ExPASy Swiss-Prot
Match: Q9RY50 (30S ribosomal protein S18 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=rpsR PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-06
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 158 RKP---GVRKP--PKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKTGISAKA 217
           RKP   G ++P  PK   F +   E+    D+++V+ L  F++D G I+ R +TG+SAK 
Sbjct: 10  RKPRGKGPKRPRKPKVDPFSIGELEI---TDYKDVKMLRRFVSDTGKILPRRRTGLSAKH 69

Query: 218 QRKVAREIKTARAFGLMPFT 233
           QR++A+ IK AR   L+P+T
Sbjct: 70  QRRIAQTIKVARQLALLPYT 86

[Close]

BLAST of CcUC02G037020 vs. ExPASy TrEMBL
Match: A0A6J1JHF0 (uncharacterized protein LOC111484513 OS=Cucurbita maxima OX=3661 GN=LOC111484513 PE=4 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 2.0e-131
Identity = 247/271 (91.14%), Postives = 255/271 (94.10%), Query Frame = 0


Query: 1   MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFG 60
           M TVQVALRTLGGGLSRR KQP VLRNLSTNAARDSGF DDKGKPDSFESADDFERRIFG
Sbjct: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGF-DDKGKPDSFESADDFERRIFG 60

Query: 61  GVSSGDSGNEAFFEKLDRLGKPRERIGSRLSGGNNFHSFYGLEDNLNTLSDGMDGKLKKA 120
           GVS+GDSGN+AFFEKLDRLGKPRERIGSRLSGGNNF + YGL+DNLNTLSDGMDGKLKKA
Sbjct: 61  GVSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKA 120

Query: 121 STYFEFDPEEIAKDDYTFRADMSFKPGSTYETKDLDLRKPGVRKPPKRVEFQVKTEEVLR 180
           STYFEFD EEIAKDDYTFRADMSFKPGSTYE KDLDL KPGVRKPPKRVEFQV TEEVLR
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 181 KADFRNVRFLANFITDAGIIIKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFI 240
           KADFRNVRFLANFITDAGIIIKRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+
Sbjct: 181 KADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFV 240

Query: 241 FGRTMENLDKDFEYEVFDENADADGGRPLGS 272
           FG+TME+LDKD+EYEVFD N   DGG PLGS
Sbjct: 241 FGKTMEDLDKDYEYEVFDNN---DGGHPLGS 267

[Close]

BLAST of CcUC02G037020 vs. ExPASy TrEMBL
Match: A0A6J1FYC1 (uncharacterized protein LOC111448465 OS=Cucurbita moschata OX=3662 GN=LOC111448465 PE=4 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 2.0e-131
Identity = 247/271 (91.14%), Postives = 255/271 (94.10%), Query Frame = 0


Query: 1   MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFG 60
           MRTVQVALRTLGGGLSRR KQP VLRNLSTNAARDSGF DDKGKPDSFESADDFERRIFG
Sbjct: 1   MRTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGF-DDKGKPDSFESADDFERRIFG 60

Query: 61  GVSSGDSGNEAFFEKLDRLGKPRERIGSRLSGGNNFHSFYGLEDNLNTLSDGMDGKLKKA 120
           GVS+GDSGN+AFFEKLDR+GKPRERIGSRLSGGNNF S YGL+DNLNTLSDGMDGKLKKA
Sbjct: 61  GVSTGDSGNDAFFEKLDRIGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKA 120

Query: 121 STYFEFDPEEIAKDDYTFRADMSFKPGSTYETKDLDLRKPGVRKPPKRVEFQVKTEEVLR 180
           STYFEFD EEIAKDDYTFRADMSFKPGSTYE KDLDL KPGVRKPPKRVEFQV TEEVLR
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEVKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 181 KADFRNVRFLANFITDAGIIIKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFI 240
           KADFRNVRFLANFITDAGIIIKRSKT ISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+
Sbjct: 181 KADFRNVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFV 240

Query: 241 FGRTMENLDKDFEYEVFDENADADGGRPLGS 272
           FG+TME+LDKD+EYEVFD N   DG  PLGS
Sbjct: 241 FGKTMEDLDKDYEYEVFDNN---DGEHPLGS 267

[Close]

BLAST of CcUC02G037020 vs. ExPASy TrEMBL
Match: A0A6J1D4R9 (uncharacterized protein LOC111017003 OS=Momordica charantia OX=3673 GN=LOC111017003 PE=3 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 9.2e-129
Identity = 236/271 (87.08%), Postives = 254/271 (93.73%), Query Frame = 0


Query: 1   MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFG 60
           MRTVQ ALR+LGGGLS+R KQ  +LR+LSTNAAR++GFDD+K KPDSFESADDFERRIFG
Sbjct: 1   MRTVQAALRSLGGGLSQRFKQSSMLRSLSTNAARETGFDDEKRKPDSFESADDFERRIFG 60

Query: 61  GVSSGDSGNEAFFEKLDRLGKPRERIGSRLSGGNNFHSFYGLEDNLNTLSDGMDGKLKKA 120
           GVS  DSGNEAFFEKLDRLGKPRER+GSRLSGGNNF + YGL+D LNTLSDGMDGKLKKA
Sbjct: 61  GVSLDDSGNEAFFEKLDRLGKPRERVGSRLSGGNNFQALYGLDDYLNTLSDGMDGKLKKA 120

Query: 121 STYFEFDPEEIAKDDYTFRADMSFKPGSTYETKDLDLRKPGVRKPPKRVEFQVKTEEVLR 180
           +TYFEFDPEEI+KDDYTFRADMSFKPGSTYE KDLDLRKPGVRKPPKRVEFQV TEEVL+
Sbjct: 121 ATYFEFDPEEISKDDYTFRADMSFKPGSTYEIKDLDLRKPGVRKPPKRVEFQVTTEEVLK 180

Query: 181 KADFRNVRFLANFITDAGIIIKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFI 240
           KADFRNVRFLANFITDAGII KRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTK+F+
Sbjct: 181 KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFV 240

Query: 241 FGRTMENLDKDFEYEVFDENADADGGRPLGS 272
           FG+TME+LDKD+EYEVFD  ADAD G PLGS
Sbjct: 241 FGKTMEDLDKDYEYEVFDNTADADRGHPLGS 271

[Close]

BLAST of CcUC02G037020 vs. ExPASy TrEMBL
Match: A0A6J1G586 (uncharacterized protein LOC111451027 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451027 PE=3 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 7.8e-128
Identity = 237/271 (87.45%), Postives = 250/271 (92.25%), Query Frame = 0


Query: 1   MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFG 60
           MR VQVA RT+GGG++R+ KQP  LRNLSTNAARD  FDD+ GK +SFESADDFERRIFG
Sbjct: 1   MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFDDE-GKSNSFESADDFERRIFG 60

Query: 61  GVSSGDSGNEAFFEKLDRLGKPRERIGSRLSGGNNFHSFYGLEDNLNTLSDGMDGKLKKA 120
           GVS GDSGN+AFFEKLDRLGKPRERIGSRLSGGNNF + YG+EDNLNTLSDGMDGKLKKA
Sbjct: 61  GVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGIEDNLNTLSDGMDGKLKKA 120

Query: 121 STYFEFDPEEIAKDDYTFRADMSFKPGSTYETKDLDLRKPGVRKPPKRVEFQVKTEEVLR 180
           STYFEFDPEEIAKDDYTFRADMSFKPGSTYE KDLDL KPGVRKPPKRVEFQV TEEVLR
Sbjct: 121 STYFEFDPEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 181 KADFRNVRFLANFITDAGIIIKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFI 240
           KADFRNVRFLANFITDAGII KRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+
Sbjct: 181 KADFRNVRFLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFV 240

Query: 241 FGRTMENLDKDFEYEVFDENADADGGRPLGS 272
           FG+TME LDKD+EYEVF+ N DAD GRP GS
Sbjct: 241 FGKTMEYLDKDYEYEVFENNTDADRGRPHGS 270

[Close]

BLAST of CcUC02G037020 vs. ExPASy TrEMBL
Match: A0A6J1KYL3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 OS=Cucurbita maxima OX=3661 GN=LOC111499912 PE=3 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.4e-121
Identity = 227/263 (86.31%), Postives = 240/263 (91.25%), Query Frame = 0


Query: 9   RTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFGGVSSGDSG 68
           RT+GGG++R+ KQP  LRNLSTNAARD  FDD+ GK +SFESADDFERRIFGGVS GDSG
Sbjct: 6   RTIGGGITRKFKQPSALRNLSTNAARDCSFDDE-GKSNSFESADDFERRIFGGVSLGDSG 65

Query: 69  NEAFFEKLDRLGKPRERIGSRLSGGNNFHSFYGLEDNLNTLSDGMDGKLKKASTYFEFDP 128
           N+AFFEKLDRLGKPRERIGSRLSGGNNF + YG+EDNLNTLSDGMDGKLKKASTYFEFDP
Sbjct: 66  NDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGIEDNLNTLSDGMDGKLKKASTYFEFDP 125

Query: 129 EEIAKDDYTFRADMSFKPGSTYETKDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVR 188
           EEIAKDDYTFRADMSFKPGSTYE KDLDL KPGVRK PKRVEF V TEEVLR ADFRNVR
Sbjct: 126 EEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKLPKRVEFXVMTEEVLRXADFRNVR 185

Query: 189 FLANFITDAGIIIKRSKTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGRTMENL 248
           FLANFITDAGII KRSKTGISAKAQRKVAREIKTARAFGLMP TTMGTKSF+FG+TME L
Sbjct: 186 FLANFITDAGIINKRSKTGISAKAQRKVAREIKTARAFGLMPLTTMGTKSFVFGKTMEYL 245

Query: 249 DKDFEYEVFDENADADGGRPLGS 272
           DKD+EYEVF+ N DAD GRP GS
Sbjct: 246 DKDYEYEVFENNTDADRGRPHGS 267

[Close]

BLAST of CcUC02G037020 vs. TAIR 10
Match: AT1G07210.1 (Ribosomal protein S18 )

HSP 1 Score: 190.7 bits (483), Expect = 1.6e-48
Identity = 122/273 (44.69%), Postives = 165/273 (60.44%), Query Frame = 0


Query: 1   MRTVQVALRTLGGGLSRRLKQPYVLRNLSTNAARDSGFDDDKGKPDSFESADDFERRIFG 60
           M   + A R+L      R  +P V R+L+TNA      +D      SF+S+D+ +  +FG
Sbjct: 1   MSIARFATRSLNNVTFLRPFRPIVSRSLATNAN-----EDPNQNRSSFDSSDNLD-SLFG 60

Query: 61  GVSSGDSGNEAFFEKLDRLGKPRERI-------GSRLSGGNNFHSFYGLEDNLNTLSDGM 120
             +  D  +  FF+ L +  K +          GSR SGG +       ++  +  SDG+
Sbjct: 61  DYTGNDEKSNDFFQHLSKAEKDKRDFNGYNRSGGSRYSGGGSMSK----DETFDPSSDGV 120

Query: 121 DGKLKKASTYFEFDPEEIAKDDYTFRADMSFKPGSTYETKDLDLRKPGVRKPPKRVEFQV 180
           DGKLK+A+  +  D  +  K +Y+FR D +   G     +   ++K          + +V
Sbjct: 121 DGKLKEAALAYNMDEGDGFK-EYSFRPDFNNSWGMNNFPR---MQKQMQNPRQNNSKSEV 180

Query: 181 KTEEVLRKADFRNVRFLANFITDAGIIIKRSKTGISAKAQRKVAREIKTARAFGLMPFTT 240
            TEEVL+ ADFRNVRFLANFIT+AGIIIKR +TGISAKAQRK+AREIKTARAFGLMPFTT
Sbjct: 181 TTEEVLKNADFRNVRFLANFITEAGIIIKRKQTGISAKAQRKIAREIKTARAFGLMPFTT 240

Query: 241 MGTKSFIFGRTMENLDKDFEYEVFDENADADGG 267
           MGTK+F FG+TMEN D+DFEYEV D++ + D G
Sbjct: 241 MGTKAFQFGKTMENRDQDFEYEVLDDDDEFDEG 259

The following BLAST results are available for this feature:

BLAST of CcUC02G037020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022986919.1	4.1e-131	91.14	uncharacterized protein LOC111484513 [Cucurbita maxima]	[more]
XP_022943865.1	4.1e-131	91.14	uncharacterized protein LOC111448465 [Cucurbita moschata]	[more]
XP_023512473.1	4.1e-131	91.51	uncharacterized protein LOC111777218 [Cucurbita pepo subsp. pepo]	[more]
KAG6570652.1	5.3e-131	91.14	hypothetical protein SDJN03_29567, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7010502.1	1.7e-129	90.77	rpsR [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CcUC02G037020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62659	1.3e-07	39.51	30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 703...	[more]
Q5SLQ0	1.3e-07	39.51	30S ribosomal protein S18 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 /...	[more]
P80382	3.8e-07	38.27	30S ribosomal protein S18 OS=Thermus thermophilus OX=274 GN=rpsR PE=1 SV=3	[more]
C1CXK0	1.1e-06	40.00	30S ribosomal protein S18 OS=Deinococcus deserti (strain DSM 17065 / CIP 109153 ...	[more]
Q9RY50	1.1e-06	40.00	30S ribosomal protein S18 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20...	[more]

BLAST of CcUC02G037020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JHF0	2.0e-131	91.14	uncharacterized protein LOC111484513 OS=Cucurbita maxima OX=3661 GN=LOC111484513...	[more]
A0A6J1FYC1	2.0e-131	91.14	uncharacterized protein LOC111448465 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A6J1D4R9	9.2e-129	87.08	uncharacterized protein LOC111017003 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1G586	7.8e-128	87.45	uncharacterized protein LOC111451027 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KYL3	1.4e-121	86.31	LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 OS=Cucurbita maxima OX...	[more]

BLAST of CcUC02G037020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07210.1	1.6e-48	44.69	Ribosomal protein S18	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001648	Ribosomal protein S18	PRINTS	PR00974	RIBOSOMALS18	coord: 221..231 score: 52.07 coord: 189..199 score: 33.33 coord: 207..221 score: 42.42
IPR001648	Ribosomal protein S18	PFAM	PF01084	Ribosomal_S18	coord: 182..229 e-value: 2.9E-16 score: 59.4
IPR001648	Ribosomal protein S18	TIGRFAM	TIGR00165	TIGR00165	coord: 175..232 e-value: 1.2E-11 score: 42.7
IPR001648	Ribosomal protein S18	PANTHER	PTHR13479	30S RIBOSOMAL PROTEIN S18	coord: 30..264
IPR001648	Ribosomal protein S18	HAMAP	MF_00270	Ribosomal_S18	coord: 159..234 score: 15.634276
IPR036870	Ribosomal protein S18 superfamily	GENE3D	4.10.640.10	Ribosomal protein S18	coord: 151..234 e-value: 1.1E-19 score: 72.3
IPR036870	Ribosomal protein S18 superfamily	SUPERFAMILY	46911	Ribosomal protein S18	coord: 161..232
None	No IPR available	PANTHER	PTHR13479:SF40	28S RIBOSOMAL PROTEIN S18C, MITOCHONDRIAL	coord: 30..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G037020.1	CcUC02G037020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005763	mitochondrial small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome