CcUC02G035600 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G035600
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	transcription elongation factor B polypeptide 3
Location	CicolChr02: 31402056 .. 31405472 (+)
RNA-Seq Expression	CcUC02G035600
Synteny	CcUC02G035600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATGGGTCATCTCAAACCAAGAATTGGAGTTCAGGAAAATGATCGCCATGTGGAGATTAGAAGGGAGAAAAAAACCAAGAGTAAGAAGGGAGTTGATTTGAGCCCAATTTGCTTGCCTTGGCCTTGCAGGAGCCCGAGCGAGCTAGGCCAAATGACTCAACTTCAGCCACCAAGGCAAGTGGCTTGGTTGGGCCAAATGGCTTAACTTGTCCACGTCGGCCTTCAAGGCCAAGACCGAGGCGAGCTCCATTCTATCCACAATGGCTCACTTCCCGTGGGCTATGGTCCAAGTCTCCTCTAGTCGGCTCGAATCTACGTTTCCCAATTCTCTTAGGTTTGGAACTCTTGGTCAACTGTTTTATAAATAAGAAGTTATAGATCTCACGCAAGGTAAGTCTTCTCCTTACTTCTTGCTTGTTGACCCTTTGCTAAATGATTAATAATAATTTATAATTATAATCAACCTAACATTTAATGGGTGACTTCAACCAATTTTATAGTTAGTCCATAAATACATAAAACGTTTAAATTAGAATTAAATTTTTGAACTTTCTACTAAACACATATATGAAAATATGAAATACAATTTTTATTTCTATTAATCCTTTTTTTTTTTTTTAAATTGGAGTTGGACATTGAACTTCTAACCTTCAAGAAAAAGAAAAGAAAGCATGTCAATATCATTAAGTTAACTTCGCACTTATTTATATATTTATGTTAGAAAAGAAAGTAGTTATTAAATAGAGATATCGTAATTATTTTATTTATGGGAATTATTTAATCAGCGGCGCAATATAGCCACCCAGTTGGGGAAGAATATCGCAAATTATGAGAAGGTTAATCAGATGAGTATTGTAGGCCAATTCGTTCATTCCTAGTTCAACGATCGTTCTCCTCCTTCAACGATTCTCGTCTTCCTCTTCTCAGACTGTCGGTAAGGTCCTCAATATCTCAATTTATCGATCTCTTTCAGTTCATTTTCAATAGAAATTGTTGAATTGATTTTTTCCTTTCGTTTTTTCTTTTCTTTTCAATTTTTCCTTTATGTTTAGGACGATCGAACACGATATCTATAATGATCATATTATTACGAATCAGATCTATTTATTTCTTGCGTTGATTATCTATTGAATGAATTTAGGATCGTTTCCATTGATGATGAACTTTTTCTGAAGCTGTTGAACTCGATTCTCATATTTAAATGTTCTGAATTGCGAAACTGCTTAGCTGAGCAGAAAAGGTTTGGAATTATTGGGGTTTTTTTACACTCATTTTGGTTACTTGATCGGCGAGTTATTTTGCTGTCTGTCTTATATTCTGATTGGTTGCTTAAAGCTAAGAGCTATTTAAGATGCTGTATTCAGGTACTTCTTTGTGAAGGGTTCGGAATTTAGCTAATCGGAATCAATTAAATGTGACAGTTTGATATTTTCTTGTAGAGCAGTTGGTTACCAGCTATGTTTACCGGTGTATTTATTAAATCAGTATTTTGTCTACTTATGTAAATTGATTGGTCTGTTTCTTTCTTGTTCTTAGCTTGGCGACCTGAGAAAGAAGAGATGTATCGAGTAAGAAAAATTCCATCCTTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTAAGGTTCCTTGGGGATGTTGGAGAAACTGATATACATCTTTTAGACCGTATTTTGCCACATTGCACAGTTGACCAATTAATGCATGTGGAGAAGAGTTCAGAAGTAAGATTGGATGAATTTGCTTCTTGTTTTTAACTATCTAGTTTTATTTTAGTATATGTGCTCAATTGAGTATGGACTTCTTACAGGGAAGAGATCTGACTCCAATAACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAAAGAAAGTACTACTACTGTAATTGAGAGGATGCGGCAGAAAAGAGTGGCATTTAGATGGATTCAATTGTATGAGGTAGCTTTCCTTTTACTTCTCTTCGCATGCCATTGCTTTGATATTTGAGTATTGAATGATGGTTAGCATGATAATCGATTCCTCTTAGAATTGCCATAAAAAATGAAGCTATCTATTTTCAGGCGAAGATGAAGGACATTGAAAAGAATGAGAGTAAAGCTGCAGATAGAATAAAACAAAGCTACCAAAAGGAAAATGCCCGTATGTTCTATATCATATTTGCATACTCTCTAATGGATTTCCTCATAATCTTAAATTTGACTAACAATTAGCTCGAGCATGCTATGCATGTTATCTGGAAATTGTTTCCACTCCCAACGTCTTATATATTAGAGGTATACTATTGGTTCATCTAAGAACAGATATTATTGATTTTTACATGTATTTTGGGAATCGTTAGTGTTTTTGTTAAGTAGATGTTTTCTTAACATATGAGATTTTAAAGATTACCTTGAACATTTTAGGAAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCCTCGAGCAATAAGAGAAGCTTTGGAGGTAAACTTTATTTAATAGATTCTAACTCTGGCAAGGCTGCAGCTGACACATTGCAAAGAAAAAAAAATATTTACATTTTATTTTTTTCTCTTGATTTGTCGTAGGAACCGGATATGGCTACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGGTAAAACTATTGAGTTGATACTGAGTGAAAATAATTTGCATAATTTTGATTACAAGATTGTCGTACAGTTTATTGCCTGTTGCTTACTTAGAGGCATTGCCTAAAATGTAATATGCCTTACGGAAAATTAAGCATGCAAGCACCTAAAATTTGATCCATCTTGGCTTAGAATCTGATTAATCGGCAGTTCAAATAGATTAATGATATGGCTTTTTTCATCTATTTAAAGCCCTTTTACCAAAATAATTCTTGAGCGGTAGCTTTTTGCAAGTTTCATAACAGACAATGGTCCTTATAACTGGGTGATTCGTAATTTAATCATGGAAGAATGTCTATGTAGATCCTTGATCATATCTCCGGAGCCCAATCTAATTAAATTTCTATAATCAATAGCTCTCATTTGTAAAATGTGCCTACCCCTCCACTCTTGAAGCAAAGCCCTATTTCATGAGTGTTCAATGAAAAGTTATCCAATCTTGATATCTTCTTATCTTTGCACAGTCAAGAGATGAAGAATATAAAAGCGTGGCGGAGAAATGCAGTGCAGAAGAGTTCCGAGTAAGTTGCAATTGTTTGTACTATCATTCTCAATGCTTTCGAAACCTCCTATTCACAAACTCGACTATGTCGCTCACATTGCCCCTTTGGTTTGCAGTATTTCTTCCACAAAAAAGTCAATGTTTTCTGGAAGGGAATCCGCTTCAACCTCGAAAAATACTACTTCCAGTCATATGGCCAGAAGATGGTAG

mRNA sequence

ATGTTATGGGTCATCTCAAACCAAGAATTGGAGTTCAGGAAAATGATCGCCATGTGGAGATTAGAAGGGAGAAAAAAACCAAGAAAGGCAAGTGGCTTGGTTGGGCCAAATGGCTTAACTTGTCCACGTCGGCCTTCAAGGCCAAGACCGAGGCGAGCTCCATTCTATCCACAATGGCTCACTTCCCGTGGGCTATGGTCCAAGTCTCCTCTAGTCGGCTCGAATCTACGTTTCCCAATTCTCTTAGGTTTGGAACTCTTGGCCAATTCGTTCATTCCTAGTTCAACGATCGTTCTCCTCCTTCAACGATTCTCGTCTTCCTCTTCTCAGACTGTCGCTTGGCGACCTGAGAAAGAAGAGATGTATCGAGTAAGAAAAATTCCATCCTTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTAAGGTTCCTTGGGGATGTTGGAGAAACTGATATACATCTTTTAGACCGTATTTTGCCACATTGCACAGTTGACCAATTAATGCATGTGGAGAAGAGTTCAGAAGGAAGAGATCTGACTCCAATAACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAAAGAAAGTACTACTACTGTAATTGAGAGGATGCGGCAGAAAAGAGTGGCATTTAGATGGATTCAATTGTATGAGGCGAAGATGAAGGACATTGAAAAGAATGAGAGTAAAGCTGCAGATAGAATAAAACAAAGCTACCAAAAGGAAAATGCCCGAAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCCTCGAGCAATAAGAGAAGCTTTGGAGGAACCGGATATGGCTACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGTCAAGAGATGAAGAATATAAAAGCGTGGCGGAGAAATGCAGTGCAGAAGAGTTCCGATATTTCTTCCACAAAAAAGTCAATGTTTTCTGGAAGGGAATCCGCTTCAACCTCGAAAAATACTACTTCCAGTCATATGGCCAGAAGATGGTAG

Coding sequence (CDS)

ATGTTATGGGTCATCTCAAACCAAGAATTGGAGTTCAGGAAAATGATCGCCATGTGGAGATTAGAAGGGAGAAAAAAACCAAGAAAGGCAAGTGGCTTGGTTGGGCCAAATGGCTTAACTTGTCCACGTCGGCCTTCAAGGCCAAGACCGAGGCGAGCTCCATTCTATCCACAATGGCTCACTTCCCGTGGGCTATGGTCCAAGTCTCCTCTAGTCGGCTCGAATCTACGTTTCCCAATTCTCTTAGGTTTGGAACTCTTGGCCAATTCGTTCATTCCTAGTTCAACGATCGTTCTCCTCCTTCAACGATTCTCGTCTTCCTCTTCTCAGACTGTCGCTTGGCGACCTGAGAAAGAAGAGATGTATCGAGTAAGAAAAATTCCATCCTTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTAAGGTTCCTTGGGGATGTTGGAGAAACTGATATACATCTTTTAGACCGTATTTTGCCACATTGCACAGTTGACCAATTAATGCATGTGGAGAAGAGTTCAGAAGGAAGAGATCTGACTCCAATAACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAAAGAAAGTACTACTACTGTAATTGAGAGGATGCGGCAGAAAAGAGTGGCATTTAGATGGATTCAATTGTATGAGGCGAAGATGAAGGACATTGAAAAGAATGAGAGTAAAGCTGCAGATAGAATAAAACAAAGCTACCAAAAGGAAAATGCCCGAAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTTCCCCCCTCGAGCAATAAGAGAAGCTTTGGAGGAACCGGATATGGCTACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGTCAAGAGATGAAGAATATAAAAGCGTGGCGGAGAAATGCAGTGCAGAAGAGTTCCGATATTTCTTCCACAAAAAAGTCAATGTTTTCTGGAAGGGAATCCGCTTCAACCTCGAAAAATACTACTTCCAGTCATATGGCCAGAAGATGGTAG

Protein sequence

MLWVISNQELEFRKMIAMWRLEGRKKPRKASGLVGPNGLTCPRRPSRPRPRRAPFYPQWLTSRGLWSKSPLVGSNLRFPILLGLELLANSFIPSSTIVLLLQRFSSSSSQTVAWRPEKEEMYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIKQSYQKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKSMFSGRESASTSKNTTSSHMARRW

Homology

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BLAST of CcUC02G035600 vs. NCBI nr
Match: XP_004143189.1 (transcription elongation factor B polypeptide 3 isoform X1 [Cucumis sativus] >KAE8646931.1 hypothetical protein Csa_021040 [Cucumis sativus])

HSP 1 Score: 420.2 bits (1079), Expect = 1.7e-113
Identity = 218/226 (96.46%), Postives = 223/226 (98.67%), Query Frame = 0


Query: 121 MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 180
           MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60

Query: 181 TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 240
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120

Query: 241 QSYQKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQSQEM 300
           QSY KENARKQSRQIQICSKVPPSSNKRSFGG+GYGYNVANTKNKILKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 301 KNIKAWRRNAVQKSSDISSTKKSMFSGRESASTSKNTTSSHMARRW 347
           KNIKAWRRNAVQKSSDISSTKK MFSGRESASTSKN TS+HMA+RW
Sbjct: 181 KNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKN-TSTHMAKRW 225

[Close]

BLAST of CcUC02G035600 vs. NCBI nr
Match: KAG6604740.1 (hypothetical protein SDJN03_02057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 416.8 bits (1070), Expect = 1.9e-112
Identity = 219/254 (86.22%), Postives = 238/254 (93.70%), Query Frame = 0


Query: 94  SSTIVLLLQRFSSS-SSQTVAWRPEKEEMYRVRKIPSLVDLCVNKAIDNLRFLGDVGETD 153
           SSTIVLL QRFSSS SSQTVAW+PEKEEMY VRK+PSLVDLCV KAIDNLRFLGDVGETD
Sbjct: 5   SSTIVLLFQRFSSSPSSQTVAWQPEKEEMYPVRKVPSLVDLCVYKAIDNLRFLGDVGETD 64

Query: 154 IHLLDRILPHCTVDQLMHVEKSSEGRDLTPITDKLWKKFYERQFGKESTTTVIERMRQKR 213
           +HLL+RILPHCTVDQLMHVEKSSEGRDLTP+TDKLWKKFYERQFG+E+T  V ERM++K+
Sbjct: 65  LHLLERILPHCTVDQLMHVEKSSEGRDLTPVTDKLWKKFYERQFGRENTNIVSERMQKKK 124

Query: 214 VAFRWIQLYEAKMKDIEKNESKAADRIKQSYQKENARKQSRQIQICSKVPPSSNKRSFGG 273
           VAFRWIQLYEAKMKDIEKNES+AADRIKQSY KENARKQSRQIQICSKVPP+SNKRSF G
Sbjct: 125 VAFRWIQLYEAKMKDIEKNESEAADRIKQSYLKENARKQSRQIQICSKVPPASNKRSF-G 184

Query: 274 TGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISSTKKSMFSGRESAS 333
            GYG NV NTKNK+LKK+KIEVLQSQEMKNIKAWRRNAVQK+ DI STKK MFSGR+SAS
Sbjct: 185 AGYGSNVTNTKNKLLKKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSAS 244

Query: 334 TSKNTTSSHMARRW 347
           TSK+TT +HMAR+W
Sbjct: 245 TSKSTT-THMARKW 256

[Close]

BLAST of CcUC02G035600 vs. NCBI nr
Match: XP_038900478.1 (transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispida] >XP_038900479.1 transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispida] >XP_038900480.1 transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 416.4 bits (1069), Expect = 2.4e-112
Identity = 218/226 (96.46%), Postives = 221/226 (97.79%), Query Frame = 0


Query: 121 MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 180
           MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60

Query: 181 TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 240
           TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK
Sbjct: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120

Query: 241 QSYQKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQSQEM 300
           QSYQKENARKQSRQIQICSKVPPSSNKRSFGG+ YGYNVANTKNKILKKAKIEVLQSQEM
Sbjct: 121 QSYQKENARKQSRQIQICSKVPPSSNKRSFGGSVYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 301 KNIKAWRRNAVQKSSDISSTKKSMFSGRESASTSKNTTSSHMARRW 347
           KNIKAWRRNAVQKSSDI STKK MFSGRESASTSKN TS+ MA+RW
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFSGRESASTSKN-TSTQMAKRW 225

[Close]

BLAST of CcUC02G035600 vs. NCBI nr
Match: TYJ98274.1 (transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 414.1 bits (1063), Expect = 1.2e-111
Identity = 214/226 (94.69%), Postives = 221/226 (97.79%), Query Frame = 0


Query: 121 MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 180
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 181 TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 240
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 241 QSYQKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQSQEM 300
           QSY KENARKQSRQIQICSKVPPSSNKRSFGG+GYGYNVANTKNKILKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 301 KNIKAWRRNAVQKSSDISSTKKSMFSGRESASTSKNTTSSHMARRW 347
           KNIKAWRRNAVQKSSDI STKK MF GRESASTSKN TS+HMA+RW
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKN-TSTHMAKRW 225

[Close]

BLAST of CcUC02G035600 vs. NCBI nr
Match: XP_016901950.1 (PREDICTED: transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo])

HSP 1 Score: 409.8 bits (1052), Expect = 2.3e-110
Identity = 213/225 (94.67%), Postives = 220/225 (97.78%), Query Frame = 0


Query: 121 MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 180
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 181 TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 240
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 241 QSYQKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQSQEM 300
           QSY KENARKQSRQIQICSKVPPSSNKRSFGG+GYGYNVANTKNKILKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 301 KNIKAWRRNAVQKSSDISSTKKSMFSGRESASTSKNTTSSHMARR 346
           KNIKAWRRNAVQKSSDI STKK MF GRESASTSKN TS+HMA+R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKN-TSTHMAKR 224

[Close]

BLAST of CcUC02G035600 vs. ExPASy TrEMBL
Match: A0A5D3BGR1 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00180 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 5.8e-112
Identity = 214/226 (94.69%), Postives = 221/226 (97.79%), Query Frame = 0


Query: 121 MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 180
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 181 TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 240
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 241 QSYQKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQSQEM 300
           QSY KENARKQSRQIQICSKVPPSSNKRSFGG+GYGYNVANTKNKILKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 301 KNIKAWRRNAVQKSSDISSTKKSMFSGRESASTSKNTTSSHMARRW 347
           KNIKAWRRNAVQKSSDI STKK MF GRESASTSKN TS+HMA+RW
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKN-TSTHMAKRW 225

[Close]

BLAST of CcUC02G035600 vs. ExPASy TrEMBL
Match: A0A1S4E1U0 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 1.1e-110
Identity = 213/225 (94.67%), Postives = 220/225 (97.78%), Query Frame = 0


Query: 121 MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 180
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 181 TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 240
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 241 QSYQKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQSQEM 300
           QSY KENARKQSRQIQICSKVPPSSNKRSFGG+GYGYNVANTKNKILKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 301 KNIKAWRRNAVQKSSDISSTKKSMFSGRESASTSKNTTSSHMARR 346
           KNIKAWRRNAVQKSSDI STKK MF GRESASTSKN TS+HMA+R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKN-TSTHMAKR 224

[Close]

BLAST of CcUC02G035600 vs. ExPASy TrEMBL
Match: A0A1S3C4D6 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 1.1e-110
Identity = 213/225 (94.67%), Postives = 220/225 (97.78%), Query Frame = 0


Query: 121 MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 180
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 181 TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 240
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 241 QSYQKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQSQEM 300
           QSY KENARKQSRQIQICSKVPPSSNKRSFGG+GYGYNVANTKNKILKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 301 KNIKAWRRNAVQKSSDISSTKKSMFSGRESASTSKNTTSSHMARR 346
           KNIKAWRRNAVQKSSDI STKK MF GRESASTSKN TS+HMA+R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKN-TSTHMAKR 224

[Close]

BLAST of CcUC02G035600 vs. ExPASy TrEMBL
Match: A0A6J1I1I3 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469662 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 3.2e-102
Identity = 195/226 (86.28%), Postives = 212/226 (93.81%), Query Frame = 0


Query: 121 MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 180
           MY VRK+PSLVDLCV KAIDNLRFLGDVGETD+HLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 181 TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 240
           TP+TDKLWKKFYERQFG+EST  V ERM++K+VAFRWIQLYEAKMKDIEKNES+AADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRESTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 241 QSYQKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQSQEM 300
           QSY KENARKQSRQIQICSKVPP+SNKRSFG  GYG NV NTKNK+LKK+KIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGAAGYGSNVTNTKNKLLKKSKIEVLQSQEM 180

Query: 301 KNIKAWRRNAVQKSSDISSTKKSMFSGRESASTSKNTTSSHMARRW 347
           KNIKAWRRNAVQK+ DI STKK MFSGR+SASTSK+TT +HMAR+W
Sbjct: 181 KNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTT-THMARKW 225

[Close]

BLAST of CcUC02G035600 vs. ExPASy TrEMBL
Match: A0A6J1G8W9 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451808 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 7.2e-102
Identity = 194/226 (85.84%), Postives = 212/226 (93.81%), Query Frame = 0


Query: 121 MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 180
           MY VRK+PSLVDLCV KAIDNLRFLGDVGETD+HLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 181 TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 240
           TP+TDKLWKKFYERQFG+E+T  V ERM++K+VAFRWIQLYEAKMKDIEKNES+AADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 241 QSYQKENARKQSRQIQICSKVPPSSNKRSFGGTGYGYNVANTKNKILKKAKIEVLQSQEM 300
           QSY KENARKQSRQIQICSKVPP+SNKRSFG  GYG NV NTKNK+LKK+KIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGAAGYGSNVTNTKNKLLKKSKIEVLQSQEM 180

Query: 301 KNIKAWRRNAVQKSSDISSTKKSMFSGRESASTSKNTTSSHMARRW 347
           KNIKAWRRNAVQK+ DI STKK MFSGR+SASTSK+TT +HMAR+W
Sbjct: 181 KNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTT-THMARKW 225

[Close]

BLAST of CcUC02G035600 vs. TAIR 10
Match: AT2G42780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )

HSP 1 Score: 194.5 bits (493), Expect = 1.4e-49
Identity = 104/214 (48.60%), Postives = 152/214 (71.03%), Query Frame = 0


Query: 125 RKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPIT 184
           +K PSLVDLCV KAIDN++++G VG  D  LL++IL HCT++QL H+E +++  DL+PIT
Sbjct: 8   KKPPSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPIT 67

Query: 185 DKLWKKFYERQFGKESTTTVIERMRQKRV-AFRWIQLYEAKMKDIEKNESKAADRIKQSY 244
           DK WK FY++ +G+E    +IE +   +V  F+W  LYE K+  +++ E +   R+K+ Y
Sbjct: 68  DKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERY 127

Query: 245 QKENARKQSRQIQICSKVPPSSNKRSF-GGTGYGYNVANTKNKILKKAKIEVLQSQEMKN 304
           + EN RKQSRQ ++CSK PPS  KR F G +  GYN+ + K+ I+KKAKI++L+SQE+KN
Sbjct: 128 KDENERKQSRQTKVCSKAPPS--KRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKN 187

Query: 305 IKAWRRNAVQKSSDISSTKKSMFSGRESASTSKN 337
           + A +RN +QKS  IS+ KK+  S   S STS++
Sbjct: 188 LTAIKRNTIQKSFSISTPKKTGLSA-NSPSTSRS 218

[Close]

BLAST of CcUC02G035600 vs. TAIR 10
Match: AT2G42780.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684). )

HSP 1 Score: 192.2 bits (487), Expect = 6.9e-49
Identity = 103/217 (47.47%), Postives = 153/217 (70.51%), Query Frame = 0


Query: 125 RKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPIT 184
           +K PSLVDLCV KAIDN++++G VG  D  LL++IL HCT++QL H+E +++  DL+PIT
Sbjct: 8   KKPPSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPIT 67

Query: 185 DKLWKKFYERQFGKESTTTVIERMRQKRV-AFRWIQLYEAKMKDIEKNESKAADRIKQSY 244
           DK WK FY++ +G+E    +IE +   +V  F+W  LYE K+  +++ E +   R+K+ Y
Sbjct: 68  DKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERY 127

Query: 245 QKENARKQSRQIQICSKVPPSSNKRSF-GGTGYGYNVANTKNKILKKAKIEVLQSQEMKN 304
           + EN RKQSRQ ++CSK PPS  KR F G +  GYN+ + K+ I+KKAKI++L+SQE+KN
Sbjct: 128 KDENERKQSRQTKVCSKAPPS--KRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKN 187

Query: 305 IKAWRRNAVQKSSDISSTKKSMFSGRESASTSKNTTS 340
           + A +RN +QKS  IS+ K++  S   + STS++  S
Sbjct: 188 LTAIKRNTIQKSFSISAPKRTGLSA-NAPSTSRSVPS 221

The following BLAST results are available for this feature:

BLAST of CcUC02G035600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143189.1	1.7e-113	96.46	transcription elongation factor B polypeptide 3 isoform X1 [Cucumis sativus] >KA...	[more]
KAG6604740.1	1.9e-112	86.22	hypothetical protein SDJN03_02057, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038900478.1	2.4e-112	96.46	transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispi...	[more]
TYJ98274.1	1.2e-111	94.69	transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. ma...	[more]
XP_016901950.1	2.3e-110	94.67	PREDICTED: transcription elongation factor B polypeptide 3 isoform X2 [Cucumis m...	[more]

BLAST of CcUC02G035600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G035600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BGR1	5.8e-112	94.69	Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ...	[more]
A0A1S4E1U0	1.1e-110	94.67	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=36...	[more]
A0A1S3C4D6	1.1e-110	94.67	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A6J1I1I3	3.2e-102	86.28	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1G8W9	7.2e-102	85.84	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita moschata...	[more]

BLAST of CcUC02G035600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42780.1	1.4e-49	48.60	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]
AT2G42780.2	6.9e-49	47.47	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 218..238
None	No IPR available	GENE3D	6.10.250.3180		coord: 141..247 e-value: 7.2E-21 score: 76.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 307..346
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 308..340
None	No IPR available	PANTHER	PTHR47543	OS08G0169600 PROTEIN	coord: 121..341
IPR010684	RNA polymerase II transcription factor SIII, subunit A	PFAM	PF06881	Elongin_A	coord: 146..255 e-value: 1.1E-26 score: 93.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G035600.1	CcUC02G035600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
cellular_component	GO:0070449	elongin complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003746	translation elongation factor activity