CcUC02G035560 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G035560
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Protein RALF-like 17
Location	CicolChr02: 31368187 .. 31368534 (+)
RNA-Seq Expression	CcUC02G035560
Synteny	CcUC02G035560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTTCAAGACGACTGGCCCTTCTTTCCCTCGGAACAATCCTTCTCTGCTTCTTGTTCACTAGAGTTTCCGCCGCCGGATCCGAATACGGCGGCGACATTCACACCGTCAGGCACTCCTCTGACACCGCCGACTGCAATGGCGAACATCCCGACAAAGGCGACCAATGCAGGGAAGAAAACGACGTGGTTGAGGACGATGATTTCGACGACACCTACAAGATCGTCAACAACATCGCCGTAACCCTATCGGCGACCGGCAGTATACTTCAGGAGACGGAGGAATTGGACGATATCCCGGCGTCGGAGGAAGAGGTCGGCAACATGTTTATAGTGGGGCACTGA

mRNA sequence

ATGGCTGTTTCAAGACGACTGGCCCTTCTTTCCCTCGGAACAATCCTTCTCTGCTTCTTGTTCACTAGAGTTTCCGCCGCCGGATCCGAATACGGCGGCGACATTCACACCGTCAGGCACTCCTCTGACACCGCCGACTGCAATGGCGAACATCCCGACAAAGGCGACCAATGCAGGGAAGAAAACGACGTGGTTGAGGACGATGATTTCGACGACACCTACAAGATCGTCAACAACATCGCCGTAACCCTATCGGCGACCGGCAGTATACTTCAGGAGACGGAGGAATTGGACGATATCCCGGCGTCGGAGGAAGAGGTCGGCAACATGTTTATAGTGGGGCACTGA

Coding sequence (CDS)

ATGGCTGTTTCAAGACGACTGGCCCTTCTTTCCCTCGGAACAATCCTTCTCTGCTTCTTGTTCACTAGAGTTTCCGCCGCCGGATCCGAATACGGCGGCGACATTCACACCGTCAGGCACTCCTCTGACACCGCCGACTGCAATGGCGAACATCCCGACAAAGGCGACCAATGCAGGGAAGAAAACGACGTGGTTGAGGACGATGATTTCGACGACACCTACAAGATCGTCAACAACATCGCCGTAACCCTATCGGCGACCGGCAGTATACTTCAGGAGACGGAGGAATTGGACGATATCCCGGCGTCGGAGGAAGAGGTCGGCAACATGTTTATAGTGGGGCACTGA

Protein sequence

MAVSRRLALLSLGTILLCFLFTRVSAAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQCREENDVVEDDDFDDTYKIVNNIAVTLSATGSILQETEELDDIPASEEEVGNMFIVGH

Homology

[Close]

BLAST of CcUC02G035560 vs. NCBI nr
Match: KAA0054503.1 (hypothetical protein E6C27_scaffold24G002830 [Cucumis melo var. makuwa] >TYK14536.1 hypothetical protein E5676_scaffold552G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41
Identity = 95/117 (81.20%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MAVSRRLAL-LSLGTILLCFLFTRVSAAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQCR 60
           MA+SRRLAL LSLGTIL  FLFTRVSAAGS+YG DIHTVRH SDTADC  EH DKGDQCR
Sbjct: 1   MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60

Query: 61  EENDVVEDDDFDDTYKIVNNIAVTLSATGSILQ-ETEELDDIPASEEEVGNMFIVGH 116
           E+ND+ EDDDFDDTYKIVNNIA+TLSA+GSILQ + EE DDIP+SEEE+GNM IVGH
Sbjct: 61  EDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNMLIVGH 117

[Close]

BLAST of CcUC02G035560 vs. NCBI nr
Match: KAG6570557.1 (hypothetical protein SDJN03_29472, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.0 bits (419), Expect = 1.9e-37
Identity = 85/115 (73.91%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 1   MAVSRRLALLSLGTILLCFLFTRVSAAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQCRE 60
           MAVSRRLALLSLGTILLC LFTR + A S+YG DIHTVRHSSD+ +CN E P KGDQCRE
Sbjct: 1   MAVSRRLALLSLGTILLCLLFTRAAIAESDYGDDIHTVRHSSDSDNCNREQPYKGDQCRE 60

Query: 61  ENDVVEDDDFDDTYKIVNNIAVTLSATGSILQETEELDDIPASEEEVGNMFIVGH 116
           END VED+DFDDTYKIVNN+A+ LSA+GS L+E EE DD+P  EEE+ N+ IVGH
Sbjct: 61  ENDGVEDEDFDDTYKIVNNVAIRLSASGSKLREAEEEDDLPVPEEEIRNLSIVGH 115

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BLAST of CcUC02G035560 vs. NCBI nr
Match: KAE8646929.1 (hypothetical protein Csa_021071 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 6.8e-35
Identity = 87/115 (75.65%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 1   MAVSRRLAL-LSLGTILLCFLFTRVS-AAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQC 60
           MA+SRRL L L+LGTIL CFLF  VS AAG +YG DIHTV+H SDTA+C  EH DKGDQC
Sbjct: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60

Query: 61  REENDVVEDDDFDDTYKIVNNIAVTLSATGSIL-QETEELDDIPASEEEVGNMFI 113
           REEND+ EDDDFDDTYKIVNNIAVTLSA+G IL QETEE +DIP+SEEE+GN+ I
Sbjct: 61  REENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNILI 115

[Close]

BLAST of CcUC02G035560 vs. NCBI nr
Match: KAG6604744.1 (hypothetical protein SDJN03_02061, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.5 bits (267), Expect = 8.0e-20
Identity = 61/93 (65.59%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 1  MAVSRRLALLSLGTILLCFLFTRVSAAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQCRE 60
          MAVSRRLAL SLGTILLCFL TR + A S++G ++H VR+SS   D      +K  QCR+
Sbjct: 1  MAVSRRLALFSLGTILLCFLITRAAVADSDHGHNVHVVRYSSAATD----ESEKAHQCRQ 60

Query: 61 ENDVVEDDDFDDTYKIVNNIAVTLSATGSILQE 94
          END V DDDFDDTYKIVNNIA+TLSA+G IL+E
Sbjct: 61 ENDDV-DDDFDDTYKIVNNIAITLSASGRILKE 88

[Close]

BLAST of CcUC02G035560 vs. NCBI nr
Match: RXH90050.1 (hypothetical protein DVH24_032407 [Malus domestica])

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-11
Identity = 54/118 (45.76%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 1   MAVSRRLALLSLGTILLCFLFTRVSAAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQCRE 60
           MAVSRRL LL LGT+L      +V+ A   +G             DC+ + P+ GDQCRE
Sbjct: 1   MAVSRRLLLLCLGTLLASVFLLKVAEARENHG-------------DCHSD-PNNGDQCRE 60

Query: 61  -ENDVVEDDDFDDTYKIVNNIAVTLSA-TGSILQETEELDDIPASEE-EVGNMFIVGH 116
            E D V DDD DDTYKIVN +AVTLSA TG +  + +EL D   +E+ E  ++ ++GH
Sbjct: 61  DETDAVGDDDVDDTYKIVNKVAVTLSARTGEVEPDADELPDADETEDNESSHVIVMGH 104

[Close]

BLAST of CcUC02G035560 vs. ExPASy TrEMBL
Match: A0A5D3CVV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00150 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.2e-42
Identity = 95/117 (81.20%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 1   MAVSRRLAL-LSLGTILLCFLFTRVSAAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQCR 60
           MA+SRRLAL LSLGTIL  FLFTRVSAAGS+YG DIHTVRH SDTADC  EH DKGDQCR
Sbjct: 1   MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTADCKREHLDKGDQCR 60

Query: 61  EENDVVEDDDFDDTYKIVNNIAVTLSATGSILQ-ETEELDDIPASEEEVGNMFIVGH 116
           E+ND+ EDDDFDDTYKIVNNIA+TLSA+GSILQ + EE DDIP+SEEE+GNM IVGH
Sbjct: 61  EDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNMLIVGH 117

[Close]

BLAST of CcUC02G035560 vs. ExPASy TrEMBL
Match: A0A0A0KGZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169270 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.1e-37
Identity = 90/118 (76.27%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 1   MAVSRRLAL-LSLGTILLCFLFTRVS-AAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQC 60
           MA+SRRL L L+LGTIL CFLF  VS AAG +YG DIHTV+H SDTA+C  EH DKGDQC
Sbjct: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTAECKREHLDKGDQC 60

Query: 61  REENDVVEDDDFDDTYKIVNNIAVTLSATGSIL-QETEELDDIPASEEEVGNMFIVGH 116
           REEND+ EDDDFDDTYKIVNNIAVTLSA+G IL QETEE +DIP+SEEE+GN+ IVGH
Sbjct: 61  REENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNILIVGH 118

[Close]

BLAST of CcUC02G035560 vs. ExPASy TrEMBL
Match: A0A2N9FLD3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15974 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 55/121 (45.45%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 1   MAVSRRLALLSLGTILLCFLFTRVSAAG-SEYGGDIHTVRHSSDTADCNGEHPDKGDQCR 60
           MA+SR + L  LGT+L+C L  +VS A  S++   IH ++H  D   C+G HP+ GDQCR
Sbjct: 1   MAISRSVLLFGLGTLLVCLLLIKVSEADESDHYAPIHVIKH--DGIHCDGAHPNNGDQCR 60

Query: 61  EENDVVE--DDDFDDTYKIVNNIAVTLSA-TG-SILQETEELDDIPASEEEVGN-MFIVG 116
            ++D  E  DDD DDTYK+VN ++V+ SA TG S   E     D  ++EEE+ N M ++G
Sbjct: 61  NDDDDNEEVDDDVDDTYKVVNKMSVSFSASTGQSSSSEDPSESDATSTEEELNNHMIVLG 119

[Close]

BLAST of CcUC02G035560 vs. ExPASy TrEMBL
Match: A0A498J3I4 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032407 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.7e-12
Identity = 54/118 (45.76%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 1   MAVSRRLALLSLGTILLCFLFTRVSAAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQCRE 60
           MAVSRRL LL LGT+L      +V+ A   +G             DC+ + P+ GDQCRE
Sbjct: 1   MAVSRRLLLLCLGTLLASVFLLKVAEARENHG-------------DCHSD-PNNGDQCRE 60

Query: 61  -ENDVVEDDDFDDTYKIVNNIAVTLSA-TGSILQETEELDDIPASEE-EVGNMFIVGH 116
            E D V DDD DDTYKIVN +AVTLSA TG +  + +EL D   +E+ E  ++ ++GH
Sbjct: 61  DETDAVGDDDVDDTYKIVNKVAVTLSARTGEVEPDADELPDADETEDNESSHVIVMGH 104

[Close]

BLAST of CcUC02G035560 vs. ExPASy TrEMBL
Match: A0A540N9K5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_006659 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.3e-11
Identity = 51/118 (43.22%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 1   MAVSRRLALLSLGTILLCFLFTRVSAAGSEYGGDIHTVRHSSDTADCNGEHPDKGDQCRE 60
           MAVSR L LL LGT+L+     +V+ A  ++G             DC+G+ P+ GDQC+E
Sbjct: 1   MAVSRGLLLLCLGTLLVSVFLVKVAEASEDHG-------------DCHGD-PNNGDQCQE 60

Query: 61  -ENDVVEDDDFDDTYKIVNNIAVTLSA-TGSILQETEELDD-IPASEEEVGNMFIVGH 116
            E+DV+ DDD DDTYKIVN +AVT SA TG +  +  E  D   A + E  ++ ++GH
Sbjct: 61  HESDVIGDDDVDDTYKIVNKVAVTFSARTGEVEPDAAEASDPDDAEDNESSHVIVMGH 104

The following BLAST results are available for this feature:

BLAST of CcUC02G035560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054503.1	1.3e-41	81.20	hypothetical protein E6C27_scaffold24G002830 [Cucumis melo var. makuwa] >TYK1453...	[more]
KAG6570557.1	1.9e-37	73.91	hypothetical protein SDJN03_29472, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8646929.1	6.8e-35	75.65	hypothetical protein Csa_021071 [Cucumis sativus]	[more]
KAG6604744.1	8.0e-20	65.59	hypothetical protein SDJN03_02061, partial [Cucurbita argyrosperma subsp. sorori...	[more]
RXH90050.1	1.8e-11	45.76	hypothetical protein DVH24_032407 [Malus domestica]	[more]

BLAST of CcUC02G035560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G035560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CVV2	6.2e-42	81.20	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KGZ4	2.1e-37	76.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169270 PE=4 SV=1	[more]
A0A2N9FLD3	1.6e-13	45.45	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15974 PE=4 SV=1	[more]
A0A498J3I4	8.7e-12	45.76	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032407 PE=4 SV=1	[more]
A0A540N9K5	7.3e-11	43.22	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_006659 PE=4 SV=1	[more]

BLAST of CcUC02G035560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G035560.1	CcUC02G035560.1	mRNA