CcUC02G035120 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC02G035120
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptiontyrosine aminotransferase-like
LocationCicolChr02: 30848631 .. 30848819 (+)
RNA-Seq ExpressionCcUC02G035120
SyntenyCcUC02G035120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGAACGGCGGCGACCAGCACTGGAACTTCCACAGTAATGAACATCTCAATAAATCCTCCATTTCAGTCCGTGGCACTCTTAATAAGCTCTGTAACCATCTCAATACTGATGATTCTCGCCCCATTATCGCTTTTGGCAGAGCCGACCCTTCTGCCTACCCCAGCTTTCACTCTTCTCCATGA

mRNA sequence

ATGGAGATGAACGGCGGCGACCAGCACTGGAACTTCCACAGTAATGAACATCTCAATAAATCCTCCATTTCAGTCCGTGGCACTCTTAATAAGCTCTGTAACCATCTCAATACTGATGATTCTCGCCCCATTATCGCTTTTGGCAGAGCCGACCCTTCTGCCTACCCCAGCTTTCACTCTTCTCCATGA

Coding sequence (CDS)

ATGGAGATGAACGGCGGCGACCAGCACTGGAACTTCCACAGTAATGAACATCTCAATAAATCCTCCATTTCAGTCCGTGGCACTCTTAATAAGCTCTGTAACCATCTCAATACTGATGATTCTCGCCCCATTATCGCTTTTGGCAGAGCCGACCCTTCTGCCTACCCCAGCTTTCACTCTTCTCCATGA

Protein sequence

MEMNGGDQHWNFHSNEHLNKSSISVRGTLNKLCNHLNTDDSRPIIAFGRADPSAYPSFHSSP
Homology
BLAST of CcUC02G035120 vs. NCBI nr
Match: XP_038902719.1 (tyrosine aminotransferase-like [Benincasa hispida])

HSP 1 Score: 110.5 bits (275), Expect = 5.1e-21
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1  MEMNGGDQHWNFHSNEHLNKSSISVRGTLNKLCNHLNTDDSRPIIAFGRADPSAYPSFHS 60
          MEMN GD HWNF SNEHLNKSSISVRGTLN +C+HLNTDD RPI+AFGRADPSAYPSF +
Sbjct: 1  MEMN-GDHHWNFQSNEHLNKSSISVRGTLNLICSHLNTDDPRPIVAFGRADPSAYPSFRT 60

Query: 61 SP 63
          SP
Sbjct: 61 SP 61

BLAST of CcUC02G035120 vs. NCBI nr
Match: XP_004149270.1 (tyrosine aminotransferase [Cucumis sativus] >KGN46973.1 hypothetical protein Csa_020738 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 9.0e-18
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MEMNGGDQHWNFHSNEHLNKSSISVRGTLNKLCNHLNTDDSRPIIAFGRADPSAYPSFHS 60
          MEMN  D HWNFH +EHLNK SISVRG+LN + +H N+DD RPIIAFGRADPSAYPSFH+
Sbjct: 1  MEMN-ADHHWNFHGDEHLNKLSISVRGSLNLISSHRNSDDPRPIIAFGRADPSAYPSFHT 60

Query: 61 SP 63
          SP
Sbjct: 61 SP 61

BLAST of CcUC02G035120 vs. NCBI nr
Match: XP_008448256.1 (PREDICTED: probable aminotransferase TAT2 [Cucumis melo] >KAA0062158.1 putative aminotransferase TAT2 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 5.9e-17
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 1  MEMNGGDQHWNFHSNEHLNKSSISVRGTLNKLCNHLNTDDSRPIIAFGRADPSAYPSFHS 60
          ME+N  D HWNFH +EHLNK SISVRG LN + +H NTDD RPIIAFGRADPSAYP+FH+
Sbjct: 1  MEIN-SDHHWNFHGDEHLNKFSISVRGFLNLVSSHRNTDDPRPIIAFGRADPSAYPAFHT 60

Query: 61 SP 63
          SP
Sbjct: 61 SP 61

BLAST of CcUC02G035120 vs. NCBI nr
Match: TYK04882.1 (putative aminotransferase TAT2 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 5.9e-17
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 1  MEMNGGDQHWNFHSNEHLNKSSISVRGTLNKLCNHLNTDDSRPIIAFGRADPSAYPSFHS 60
          ME+N  D HWNFH +EHLNK SISVRG LN + +H NTDD RPIIAFGRADPSAYP+FH+
Sbjct: 1  MEIN-SDHHWNFHGDEHLNKFSISVRGFLNLVSSHRNTDDPRPIIAFGRADPSAYPAFHT 60

Query: 61 SP 63
          SP
Sbjct: 61 SP 61

BLAST of CcUC02G035120 vs. NCBI nr
Match: XP_022970833.1 (tyrosine aminotransferase-like [Cucurbita maxima])

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 1  MEMNGGDQHWNFHSNEHLNKSSISVRGTLNKLCNHLNTDDSRPIIAFGRADPSAYPSFHS 60
          MEMN   QHWN H NE LNKSS+SVRGTLN +  +LNTDD RP+IAFGRADPS+YPSF +
Sbjct: 1  MEMN-ESQHWNIHGNEELNKSSVSVRGTLNLISTYLNTDDHRPVIAFGRADPSSYPSFRT 60

Query: 61 S 62
          S
Sbjct: 61 S 60

BLAST of CcUC02G035120 vs. ExPASy TrEMBL
Match: A0A0A0KBV7 (Aminotran_1_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G155030 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.4e-18
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MEMNGGDQHWNFHSNEHLNKSSISVRGTLNKLCNHLNTDDSRPIIAFGRADPSAYPSFHS 60
          MEMN  D HWNFH +EHLNK SISVRG+LN + +H N+DD RPIIAFGRADPSAYPSFH+
Sbjct: 1  MEMN-ADHHWNFHGDEHLNKLSISVRGSLNLISSHRNSDDPRPIIAFGRADPSAYPSFHT 60

Query: 61 SP 63
          SP
Sbjct: 61 SP 61

BLAST of CcUC02G035120 vs. ExPASy TrEMBL
Match: A0A5D3C125 (Putative aminotransferase TAT2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00750 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.8e-17
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 1  MEMNGGDQHWNFHSNEHLNKSSISVRGTLNKLCNHLNTDDSRPIIAFGRADPSAYPSFHS 60
          ME+N  D HWNFH +EHLNK SISVRG LN + +H NTDD RPIIAFGRADPSAYP+FH+
Sbjct: 1  MEIN-SDHHWNFHGDEHLNKFSISVRGFLNLVSSHRNTDDPRPIIAFGRADPSAYPAFHT 60

Query: 61 SP 63
          SP
Sbjct: 61 SP 61

BLAST of CcUC02G035120 vs. ExPASy TrEMBL
Match: A0A5A7V3J0 (Putative aminotransferase TAT2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005300 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.8e-17
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 1  MEMNGGDQHWNFHSNEHLNKSSISVRGTLNKLCNHLNTDDSRPIIAFGRADPSAYPSFHS 60
          ME+N  D HWNFH +EHLNK SISVRG LN + +H NTDD RPIIAFGRADPSAYP+FH+
Sbjct: 1  MEIN-SDHHWNFHGDEHLNKFSISVRGFLNLVSSHRNTDDPRPIIAFGRADPSAYPAFHT 60

Query: 61 SP 63
          SP
Sbjct: 61 SP 61

BLAST of CcUC02G035120 vs. ExPASy TrEMBL
Match: A0A1S3BK51 (probable aminotransferase TAT2 OS=Cucumis melo OX=3656 GN=LOC103490501 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.8e-17
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 1  MEMNGGDQHWNFHSNEHLNKSSISVRGTLNKLCNHLNTDDSRPIIAFGRADPSAYPSFHS 60
          ME+N  D HWNFH +EHLNK SISVRG LN + +H NTDD RPIIAFGRADPSAYP+FH+
Sbjct: 1  MEIN-SDHHWNFHGDEHLNKFSISVRGFLNLVSSHRNTDDPRPIIAFGRADPSAYPAFHT 60

Query: 61 SP 63
          SP
Sbjct: 61 SP 61

BLAST of CcUC02G035120 vs. ExPASy TrEMBL
Match: A0A6J1G867 (tyrosine aminotransferase-like OS=Cucurbita moschata OX=3662 GN=LOC111451745 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.3e-16
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 1  MEMNGGDQHWNFHSNEHLNKSSISVRGTLNKLCNHLNTDDSRPIIAFGRADPSAYPSFHS 60
          MEMN   QHWN H NE LNKSS+SVRGTLN +  +LNTDD RP+IAFGRADPS+YPSF +
Sbjct: 1  MEMN-ESQHWNIHGNEELNKSSVSVRGTLNLISTYLNTDDHRPVIAFGRADPSSYPSFRT 60

Query: 61 S 62
          S
Sbjct: 61 S 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038902719.15.1e-2183.87tyrosine aminotransferase-like [Benincasa hispida][more]
XP_004149270.19.0e-1875.81tyrosine aminotransferase [Cucumis sativus] >KGN46973.1 hypothetical protein Csa... [more]
XP_008448256.15.9e-1774.19PREDICTED: probable aminotransferase TAT2 [Cucumis melo] >KAA0062158.1 putative ... [more]
TYK04882.15.9e-1774.19putative aminotransferase TAT2 [Cucumis melo var. makuwa][more]
XP_022970833.11.1e-1572.13tyrosine aminotransferase-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KBV74.4e-1875.81Aminotran_1_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G1550... [more]
A0A5D3C1252.8e-1774.19Putative aminotransferase TAT2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7V3J02.8e-1774.19Putative aminotransferase TAT2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A1S3BK512.8e-1774.19probable aminotransferase TAT2 OS=Cucumis melo OX=3656 GN=LOC103490501 PE=3 SV=1[more]
A0A6J1G8675.3e-1672.13tyrosine aminotransferase-like OS=Cucurbita moschata OX=3662 GN=LOC111451745 PE=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC02G035120.1CcUC02G035120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009058 biosynthetic process
biological_process GO:0006520 cellular amino acid metabolic process
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity