CcUC02G035030 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G035030
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	transcription factor bHLH162-like
Location	CicolChr02: 30769307 .. 30769528 (+)
RNA-Seq Expression	CcUC02G035030
Synteny	CcUC02G035030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACAGAATAGGAATGCACCTAAATTGAAAATCAAAGACTTGGGCTCAACTGTGGAGGTTGTTTTAACAACTCGGTTGGACGATCGGTTAATATTTTATGAGATTATTGATATTTTTCATGAGGAGCGAGCCGAGATCATTAATATCAGTTATTCCATTCTCGAAAACACTGTCGTATATTCACTCCACACTGAGGTATACATTCGAGAAGATTGTTAG

mRNA sequence

ATGAGACAGAATAGGAATGCACCTAAATTGAAAATCAAAGACTTGGGCTCAACTGTGGAGGTTGTTTTAACAACTCGGTTGGACGATCGGTTAATATTTTATGAGATTATTGATATTTTTCATGAGGAGCGAGCCGAGATCATTAATATCAGTTATTCCATTCTCGAAAACACTGTCGTATATTCACTCCACACTGAGGTATACATTCGAGAAGATTGTTAG

Coding sequence (CDS)

ATGAGACAGAATAGGAATGCACCTAAATTGAAAATCAAAGACTTGGGCTCAACTGTGGAGGTTGTTTTAACAACTCGGTTGGACGATCGGTTAATATTTTATGAGATTATTGATATTTTTCATGAGGAGCGAGCCGAGATCATTAATATCAGTTATTCCATTCTCGAAAACACTGTCGTATATTCACTCCACACTGAGGTATACATTCGAGAAGATTGTTAG

Protein sequence

MRQNRNAPKLKIKDLGSTVEVVLTTRLDDRLIFYEIIDIFHEERAEIINISYSILENTVVYSLHTEVYIREDC

Homology

[Close]

BLAST of CcUC02G035030 vs. NCBI nr
Match: XP_038902351.1 (transcription factor bHLH162-like [Benincasa hispida])

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-18
Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1   MRQNRNAPKLKIKDLGSTVEVVLTTRLDDRLIFYEIIDIFHEERAEIINISYSILENTVV 60
           M  NRN P+LKIK++GS VEVVLTT L+DR IFYEII IF EER EIINISYSILENT++
Sbjct: 96  MSPNRNVPELKIKEMGSAVEVVLTTGLEDRSIFYEIIRIFDEERVEIINISYSILENTII 155

Query: 61  YSLHTEV 68
           YSLHTE+
Sbjct: 156 YSLHTEI 162

[Close]

BLAST of CcUC02G035030 vs. NCBI nr
Match: XP_038902350.1 (transcription factor bHLH162-like [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 6.9e-17
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 3   QNRNAPKLKIKDLGSTVEVVLTTRLDDRLIFYEIIDIFHEERAEIINISYSILENTVVYS 62
           QNRN P+LKIK++GS VEVVLTT L+DR IFYEII IF+EER EIIN+SYS LE+T++YS
Sbjct: 171 QNRNVPELKIKEMGSAVEVVLTTGLEDRSIFYEIIRIFNEERVEIINVSYSDLESTIIYS 230

Query: 63  LHTEV 68
           LH E+
Sbjct: 231 LHAEI 235

[Close]

BLAST of CcUC02G035030 vs. NCBI nr
Match: XP_023512282.1 (transcription factor bHLH162-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.0 bits (232), Expect = 5.8e-16
Identity = 43/65 (66.15%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 3   QNRNAPKLKIKDLGSTVEVVLTTRLDDRLIFYEIIDIFHEERAEIINISYSILENTVVYS 62
           +NRN P+L+IK++GS VEVVL+T L+DR IFYEII IF+EERAEI+N+SYS++ N+V+YS
Sbjct: 69  RNRNGPELRIKEMGSVVEVVLSTGLEDRFIFYEIIHIFYEERAEIVNVSYSVVGNSVLYS 128

Query: 63  LHTEV 68
           LH E+
Sbjct: 129 LHAEI 133

[Close]

BLAST of CcUC02G035030 vs. NCBI nr
Match: XP_016900533.1 (PREDICTED: transcription factor bHLH36-like isoform X2 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 4.9e-15
Identity = 43/65 (66.15%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 3   QNRNAPKLKIKDLGSTVEVVLTTRLDDRLIFYEIIDIFHEERAEIINISYSILENTVVYS 62
           QNRN P+LKIK++GS VEVVL T L+DR +FYE I I +EERAEIIN+SYS+L++T++YS
Sbjct: 75  QNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYS 134

Query: 63  LHTEV 68
           LH E+
Sbjct: 135 LHAEI 139

[Close]

BLAST of CcUC02G035030 vs. NCBI nr
Match: KAA0062040.1 (transcription factor bHLH36-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 4.9e-15
Identity = 43/65 (66.15%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 3   QNRNAPKLKIKDLGSTVEVVLTTRLDDRLIFYEIIDIFHEERAEIINISYSILENTVVYS 62
           QNRN P+LKIK++GS VEVVL T L+DR +FYE I I +EERAEIIN+SYS+L++T++YS
Sbjct: 77  QNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYS 136

Query: 63  LHTEV 68
           LH E+
Sbjct: 137 LHAEI 141

[Close]

BLAST of CcUC02G035030 vs. ExPASy Swiss-Prot
Match: F4JIJ7 (Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-04
Identity = 25/64 (39.06%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 5   RNAPKLKIKDLGSTVEVVLTTRLDDRLIFYEIIDIFHEE-RAEIINISYSILENTVVYSL 64
           R  PK++I++ GS   + L T L+ + +F EII +  EE  AEI +  YSI+++ V ++L
Sbjct: 104 RKLPKIEIQETGSIFHIFLVTSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTL 163

Query: 65  HTEV 68
           H +V
Sbjct: 164 HCKV 167

[Close]

BLAST of CcUC02G035030 vs. ExPASy TrEMBL
Match: A0A5D3BZ69 (Transcription factor bHLH36-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002050 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-15
Identity = 43/65 (66.15%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 3   QNRNAPKLKIKDLGSTVEVVLTTRLDDRLIFYEIIDIFHEERAEIINISYSILENTVVYS 62
           QNRN P+LKIK++GS VEVVL T L+DR +FYE I I +EERAEIIN+SYS+L++T++YS
Sbjct: 77  QNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYS 136

Query: 63  LHTEV 68
           LH E+
Sbjct: 137 LHAEI 141

[Close]

BLAST of CcUC02G035030 vs. ExPASy TrEMBL
Match: A0A5A7V416 (Transcription factor bHLH36-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003780 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-15
Identity = 43/65 (66.15%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 3   QNRNAPKLKIKDLGSTVEVVLTTRLDDRLIFYEIIDIFHEERAEIINISYSILENTVVYS 62
           QNRN P+LKIK++GS VEVVL T L+DR +FYE I I +EERAEIIN+SYS+L++T++YS
Sbjct: 77  QNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYS 136

Query: 63  LHTEV 68
           LH E+
Sbjct: 137 LHAEI 141

[Close]

BLAST of CcUC02G035030 vs. ExPASy TrEMBL
Match: A0A1S4DX24 (transcription factor bHLH36-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC107990944 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-15
Identity = 43/65 (66.15%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 3   QNRNAPKLKIKDLGSTVEVVLTTRLDDRLIFYEIIDIFHEERAEIINISYSILENTVVYS 62
           QNRN P+LKIK++GS VEVVL T L+DR +FYE I I +EERAEIIN+SYS+L++T++YS
Sbjct: 77  QNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYS 136

Query: 63  LHTEV 68
           LH E+
Sbjct: 137 LHAEI 141

[Close]

BLAST of CcUC02G035030 vs. ExPASy TrEMBL
Match: A0A1S4DX34 (transcription factor bHLH36-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC107990944 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.4e-15
Identity = 43/65 (66.15%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 3   QNRNAPKLKIKDLGSTVEVVLTTRLDDRLIFYEIIDIFHEERAEIINISYSILENTVVYS 62
           QNRN P+LKIK++GS VEVVL T L+DR +FYE I I +EERAEIIN+SYS+L++T++YS
Sbjct: 75  QNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAEIINVSYSLLDDTILYS 134

Query: 63  LHTEV 68
           LH E+
Sbjct: 135 LHAEI 139

[Close]

BLAST of CcUC02G035030 vs. ExPASy TrEMBL
Match: A0A6J1G8B1 (transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111451747 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.0e-15
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 6   NAPKLKIKDLGSTVEVVLTTRLDDRLIFYEIIDIFHEERAEIINISYSILENTVVYSLHT 65
           N P+LKIK++GS VEVV  T L+DR +FYEII IFHEERAEIIN +YS+L++TV+YSLH 
Sbjct: 95  NLPELKIKEMGSAVEVVFMTELNDRFLFYEIIRIFHEERAEIINATYSVLDDTVLYSLHA 154

Query: 66  EV 68
           E+
Sbjct: 155 EI 156

[Close]

BLAST of CcUC02G035030 vs. TAIR 10
Match: AT4G20970.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 7.6e-06
Identity = 25/64 (39.06%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 5   RNAPKLKIKDLGSTVEVVLTTRLDDRLIFYEIIDIFHEE-RAEIINISYSILENTVVYSL 64
           R  PK++I++ GS   + L T L+ + +F EII +  EE  AEI +  YSI+++ V ++L
Sbjct: 104 RKLPKIEIQETGSIFHIFLVTSLEHKFMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTL 163

Query: 65  HTEV 68
           H +V
Sbjct: 164 HCKV 167

The following BLAST results are available for this feature:

BLAST of CcUC02G035030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902351.1	1.6e-18	76.12	transcription factor bHLH162-like [Benincasa hispida]	[more]
XP_038902350.1	6.9e-17	72.31	transcription factor bHLH162-like [Benincasa hispida]	[more]
XP_023512282.1	5.8e-16	66.15	transcription factor bHLH162-like [Cucurbita pepo subsp. pepo]	[more]
XP_016900533.1	4.9e-15	66.15	PREDICTED: transcription factor bHLH36-like isoform X2 [Cucumis melo]	[more]
KAA0062040.1	4.9e-15	66.15	transcription factor bHLH36-like isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of CcUC02G035030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JIJ7	1.1e-04	39.06	Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=...	[more]

BLAST of CcUC02G035030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZ69	2.4e-15	66.15	Transcription factor bHLH36-like isoform X1 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7V416	2.4e-15	66.15	Transcription factor bHLH36-like isoform X1 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4DX24	2.4e-15	66.15	transcription factor bHLH36-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC107990...	[more]
A0A1S4DX34	2.4e-15	66.15	transcription factor bHLH36-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC107990...	[more]
A0A6J1G8B1	7.0e-15	67.74	transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111451747 ...	[more]

BLAST of CcUC02G035030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20970.1	7.6e-06	39.06	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13935:SF90	TRANSCRIPTION FACTOR BHLH162	coord: 5..69
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 5..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G035030.1	CcUC02G035030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity