CcUC02G034410 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC02G034410
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr02: 30225244 .. 30226063 (-)
RNA-Seq ExpressionCcUC02G034410
SyntenyCcUC02G034410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTATTGGATTGGATAGGGTCAGCGGGACGTGTAATCCAAAGCGGATCTGACAGCTTACGTGGCAAACATTTGGGAATAGTAAGACAGCTGTCAGTTCAAACGGTGCCTTTTTTGTCGTTTAGGTATTTTCGGGTTAAATAGCCGAAAAGGAAAAAAAGAAAAGAGAAAAGAGGAATAAAAAAGTTGGGGGGGGGGGGGGGGGGNATAAGGGTTAATTGAAAAACTGCTTCGTTTAGGAGGAGGAGGAGGAGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAAAAGCAATGTACTGAATCTGATAGCTCACGCACCCGAACCACAGGCCGGTTCAACTAACCCAACCGCCTAGAGGGTTGGTTGGGTTAAACTAAACATTATTTGCAATTTTCCCCACCAAAATAAATTCTTTTATTTATTTATTCTTTTCGCTGTTCCGCCCTCATACTTATTTATTCTTTTCGTCTTGATTGATATATATATATTATCATGTTAGTATGGATATATTTTCCTCATGGAGCTATAAAAATTTAAAAATTATAGTAAATATGTATTTGGAAAATAATGGACAAAATAAAACTAATATGAAAGTTTGAGAACTAATATAGGATAAGGACTAGAGTTTCATTTTGCAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCATATCGTATTATCATATCGTTTTCTTGTTTGAGTTCTTTACAAATACGTAGAATTACAGCTCTGATTACTTCTGATCTTTCTAGAGATGTATTTGGGACGACTTTCTTGATTACAGCAACAATGACGTCACCATTATGA

mRNA sequence

ATGACCTTATTGGATTGGATAGGGTCAGCGGGACGTGTAATCCAAAGCGGATCTGACAGCTTACGTGGCAAACATTTGGGAATAGTAAGACAGCTGTCAGTTCAAACGGTGCCTTTTTTGTCGTTTAGGTATTTTCGGGCATATCGTATTATCATATCGTTTTCTTGTTTGAGTTCTTTACAAATACGTAGAATTACAGCTCTGATTACTTCTGATCTTTCTAGAGATGTATTTGGGACGACTTTCTTGATTACAGCAACAATGACGTCACCATTATGA

Coding sequence (CDS)

ATGACCTTATTGGATTGGATAGGGTCAGCGGGACGTGTAATCCAAAGCGGATCTGACAGCTTACGTGGCAAACATTTGGGAATAGTAAGACAGCTGTCAGTTCAAACGGTGCCTTTTTTGTCGTTTAGGTATTTTCGGGCATATCGTATTATCATATCGTTTTCTTGTTTGAGTTCTTTACAAATACGTAGAATTACAGCTCTGATTACTTCTGATCTTTCTAGAGATGTATTTGGGACGACTTTCTTGATTACAGCAACAATGACGTCACCATTATGA

Protein sequence

MTLLDWIGSAGRVIQSGSDSLRGKHLGIVRQLSVQTVPFLSFRYFRAYRIIISFSCLSSLQIRRITALITSDLSRDVFGTTFLITATMTSPL
Homology
[Close]
BLAST of CcUC02G034410 vs. NCBI nr
Match: RHN59664.1 (hypothetical protein MtrunA17_Chr4g0015941 [Medicago truncatula])

HSP 1 Score: 53.9 bits (128), Expect = 8.4e-04
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 47 AYRIIISFSCLSSLQIRRITALITSDLSRDVFGTTFLITATMTSPL 93
          +Y III     SSLQ+R ITALITSDLS+D FGT FLITAT  SP+
Sbjct: 8  SYFIIIPLLRFSSLQVRTITALITSDLSKDEFGTAFLITATTMSPI 53

[Close]
BLAST of CcUC02G034410 vs. ExPASy TrEMBL
Match: A0A396I5Z8 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0015941 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.1e-04
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 47 AYRIIISFSCLSSLQIRRITALITSDLSRDVFGTTFLITATMTSPL 93
          +Y III     SSLQ+R ITALITSDLS+D FGT FLITAT  SP+
Sbjct: 8  SYFIIIPLLRFSSLQVRTITALITSDLSKDEFGTAFLITATTMSPI 53

[Close]
BLAST of CcUC02G034410 vs. ExPASy TrEMBL
Match: A0A445DVL5 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g013514 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.0e-04
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 47 AYRIIISFSCLSSLQIRRITALITSDLSRDVFGTTFLITATMTSPL 93
          +Y II+    LSSLQ+R ITALITSDLS+D+FGT  LITAT  SP+
Sbjct: 8  SYCIIMPLLHLSSLQVRTITALITSDLSKDIFGTASLITATTMSPI 53

The following BLAST results are available for this feature:
BLAST of CcUC02G034410 vs. NCBI nr
Match NameE-valueIdentityDescription
RHN59664.18.4e-0467.39hypothetical protein MtrunA17_Chr4g0015941 [Medicago truncatula][more]
BLAST of CcUC02G034410 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC02G034410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A396I5Z84.1e-0467.39Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0015941 ... [more]
A0A445DVL57.0e-0465.22Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g013514 PE=4 SV=1[more]
BLAST of CcUC02G034410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC02G034410.1CcUC02G034410.1mRNA