CcUC02G032230 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC02G032230
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr02: 27883748 .. 27884038 (+)
RNA-Seq ExpressionCcUC02G032230
SyntenyCcUC02G032230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTGGGAAAAGAGGCGATTGGCATAGTCAATGTGGTTGAAAGCGGCGCAAATGGAGATGAAATGGGAGAGGATTTGGTTGGATTGGTGGAGGCCATGGCGGAGGAAGTGGGCGTGGATTTGAGTGAGATGGGTTCGGGATTTGTGGCCATGAAGGAGGCGGAGGATTCTTCTCTCGATCTGGAGACACTTCTTGCTCATGTTGTAGAGATTGCTAATGGGATTTGGATTTGGAGAGAAGCAGAAGAAGAAGTGAATTACGAAGTACGAAGATTGGCGGGGAGTTGA

mRNA sequence

ATGGGATTGGGAAAAGAGGCGATTGGCATAGTCAATGTGGTTGAAAGCGGCGCAAATGGAGATGAAATGGGAGAGGATTTGGTTGGATTGGTGGAGGCCATGGCGGAGGAAGTGGGCGTGGATTTGAGTGAGATGGGTTCGGGATTTGTGGCCATGAAGGAGGCGGAGGATTCTTCTCTCGATCTGGAGACACTTCTTGCTCATGTTGTAGAGATTGCTAATGGGATTTGGATTTGGAGAGAAGCAGAAGAAGAAGTGAATTACGAAGTACGAAGATTGGCGGGGAGTTGA

Coding sequence (CDS)

ATGGGATTGGGAAAAGAGGCGATTGGCATAGTCAATGTGGTTGAAAGCGGCGCAAATGGAGATGAAATGGGAGAGGATTTGGTTGGATTGGTGGAGGCCATGGCGGAGGAAGTGGGCGTGGATTTGAGTGAGATGGGTTCGGGATTTGTGGCCATGAAGGAGGCGGAGGATTCTTCTCTCGATCTGGAGACACTTCTTGCTCATGTTGTAGAGATTGCTAATGGGATTTGGATTTGGAGAGAAGCAGAAGAAGAAGTGAATTACGAAGTACGAAGATTGGCGGGGAGTTGA

Protein sequence

MGLGKEAIGIVNVVESGANGDEMGEDLVGLVEAMAEEVGVDLSEMGSGFVAMKEAEDSSLDLETLLAHVVEIANGIWIWREAEEEVNYEVRRLAGS
Homology
BLAST of CcUC02G032230 vs. NCBI nr
Match: KAG6586228.1 (hypothetical protein SDJN03_18961, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.1 bits (253), Expect = 2.8e-18
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 0

Query: 1  MGLGKEAIGIVNVVESGANGDEMGEDLVGLVEAMAEEVGVDLSEMGSGFVAMKEAEDSSL 60
          +GLGK+AIGI N V S ANGDEMGEDLVGLV+ M EEVGVDLSEMG GFVA KEAEDS L
Sbjct: 15 LGLGKDAIGIGNFVGSSANGDEMGEDLVGLVKVMTEEVGVDLSEMGWGFVAGKEAEDSPL 74

Query: 61 DLETLLAHVVEI 73
          D+  +LAHV+EI
Sbjct: 75 DVPVVLAHVMEI 86

BLAST of CcUC02G032230 vs. NCBI nr
Match: RXI06115.1 (hypothetical protein DVH24_018157 [Malus domestica])

HSP 1 Score: 67.8 bits (164), Expect = 5.9e-08
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 21  DEMGEDLVGLVEAMAEEVGVDLSEMGSGFVAMKEAEDSSLDLETLLAH 69
           DE+GEDL+ L +AMAEEVGVDL+EMGSGFVAM+EAEDS L L    AH
Sbjct: 206 DEVGEDLIDLAKAMAEEVGVDLAEMGSGFVAMEEAEDSPLRLTACSAH 253

BLAST of CcUC02G032230 vs. NCBI nr
Match: PNX77350.1 (hypothetical protein L195_g033314, partial [Trifolium pratense])

HSP 1 Score: 60.8 bits (146), Expect = 7.2e-06
Identity = 31/57 (54.39%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 1  MGLGKEAIGIVNVVESGANGDEMGEDLVGLVEAMAEEVGVDLSEMGSGFVAMKEAED 58
          MG+ +   G+ ++++ GA+GDEMGE+LVGLVEAMAEE+GVDL E+  GF  +K+ E+
Sbjct: 15 MGMVENECGVRDLLKRGADGDEMGENLVGLVEAMAEEMGVDLWELSFGFGVVKKMEN 71

BLAST of CcUC02G032230 vs. NCBI nr
Match: GAU21522.1 (hypothetical protein TSUD_34850 [Trifolium subterraneum])

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-05
Identity = 29/57 (50.88%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 1  MGLGKEAIGIVNVVESGANGDEMGEDLVGLVEAMAEEVGVDLSEMGSGFVAMKEAED 58
          +G+ ++  G+ ++++ GA+GDEMGEDLVGLVEAMAEE+ VDL E+  GF  +K+ ++
Sbjct: 15 IGMVEDECGVRDLMKRGADGDEMGEDLVGLVEAMAEEMSVDLWELSFGFGVVKKMKN 71

BLAST of CcUC02G032230 vs. ExPASy TrEMBL
Match: A0A498KK20 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_018157 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.8e-08
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 21  DEMGEDLVGLVEAMAEEVGVDLSEMGSGFVAMKEAEDSSLDLETLLAH 69
           DE+GEDL+ L +AMAEEVGVDL+EMGSGFVAM+EAEDS L L    AH
Sbjct: 206 DEVGEDLIDLAKAMAEEVGVDLAEMGSGFVAMEEAEDSPLRLTACSAH 253

BLAST of CcUC02G032230 vs. ExPASy TrEMBL
Match: A0A2K3LFP3 (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g033314 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.5e-06
Identity = 31/57 (54.39%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 1  MGLGKEAIGIVNVVESGANGDEMGEDLVGLVEAMAEEVGVDLSEMGSGFVAMKEAED 58
          MG+ +   G+ ++++ GA+GDEMGE+LVGLVEAMAEE+GVDL E+  GF  +K+ E+
Sbjct: 15 MGMVENECGVRDLLKRGADGDEMGENLVGLVEAMAEEMGVDLWELSFGFGVVKKMEN 71

BLAST of CcUC02G032230 vs. ExPASy TrEMBL
Match: A0A2Z6M7Y1 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_34850 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-05
Identity = 29/57 (50.88%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 1  MGLGKEAIGIVNVVESGANGDEMGEDLVGLVEAMAEEVGVDLSEMGSGFVAMKEAED 58
          +G+ ++  G+ ++++ GA+GDEMGEDLVGLVEAMAEE+ VDL E+  GF  +K+ ++
Sbjct: 15 IGMVEDECGVRDLMKRGADGDEMGEDLVGLVEAMAEEMSVDLWELSFGFGVVKKMKN 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6586228.12.8e-1876.39hypothetical protein SDJN03_18961, partial [Cucurbita argyrosperma subsp. sorori... [more]
RXI06115.15.9e-0872.92hypothetical protein DVH24_018157 [Malus domestica][more]
PNX77350.17.2e-0654.39hypothetical protein L195_g033314, partial [Trifolium pratense][more]
GAU21522.14.7e-0550.88hypothetical protein TSUD_34850 [Trifolium subterraneum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A498KK202.8e-0872.92Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_018157 PE=3 SV=1[more]
A0A2K3LFP33.5e-0654.39Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g03331... [more]
A0A2Z6M7Y12.3e-0550.88Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_34850 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC02G032230.1CcUC02G032230.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006378 mRNA polyadenylation
cellular_component GO:0005849 mRNA cleavage factor complex
molecular_function GO:0003729 mRNA binding