CcUC02G032000 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G032000
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Polyketide cyclase/dehydrase and lipid transportsuperfamily protein
Location	CicolChr02: 27718128 .. 27721018 (-)
RNA-Seq Expression	CcUC02G032000
Synteny	CcUC02G032000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTATTAAATTGAAAGTTCAACAAAGATTCACAATAAACCTATAAAATTCAAGGGTATTAAAGTCACACTCAAATGCATATTGAATAGGACAAATAAAAAAGATTACAACTGAAACAGTTCATAAGAAGTTCTTTTGTGACTACTTTTTTAGCTAATCCAACTATTGGCCTTTGTGATTATTTAAAACTCGATTTCTTTATTTGTTTTCTAATAGAAAGAGGGTTGAGTGAACGATTCTTAAGAGAAACAAAGGTTTCAAATTTTACAATCAAAGTTTGAAAACCAACTGGATCCTTTTTTTCTAAATGTGATCACTAAAATTTCAAGATACAAAACTGTGTTTGCAAACTTTTTTTTTTTTTTTTTTCATTCCTTTTCCTTTTTTCCAACATATGTCTTTACACATTTGTTTTTCCTTTTTGTTTGTTTTCATTCTCAAGCAGAGCCATTTCCAGGTCCTCCTAATGTTAAAAACACACCCTGAAGATCATCTCTAAGCTTGACTGGTAATGAAGATGGAGTTGGTTTCATGATTGGAACAGGAGGAGGACTAAGTTGAGCTTGCCTCAAGCTCTGAGCTGACTCAGGCATCGGAACCAACGGTCTTTGCTGCGAGTTCTTTGACGGTGCTACGTGATTTGAGTTCGGGAGTGTGTTTGTAGGAAGAGGTGGACTTTCTGTAACAATGCTGGCCCTTGAGAAGACCCCAGGTCCCTGATTCAACGTAACTTCAATACATTGTAAAGGTTTGCATTTGTAACTACTTGAAAAAATGAGGAAGAAAGTTCAAGTTTTTGAGGATGCTTACAGGTGTGAACAGGACGCCTCTGTATACTTTCCCATTGACAGTAGCAGTCATCAGGAAGCCAGAGTCGAAGGCGCCGTCAACTCTTCCTCGAACCTCCGACCCAATCTGAAACAAACACAACGACAGAAGTATTAAAGAGTGATAAAGATGTGTAAGCAGGAATGTTGCTTTTGATGATTTGTGTGTTCTGGTTTAAGCTACCAAGTTTTGAATGAGGCCAGTCTCCAAGGACTTGTGTTCTTTCACCGGACGAACGACATGGAGAAGCTGATGTTGTTCGGTCTTTAGTTGATTCTGGTGTCCAAAATATGAAAAATCTTGCTGTGGAGTGGTTTGGACAACATTTCGGAACTCGGGTTTGGTTCTAGAAATGCTGTAAGGTTCGCTAATTGAGCTATGATTCACACACTTAAGAAGTCGTAATCCTTGGGAGCTTGTTACTGAATCAGAGACTTTTCGAACTGGGGTCTGTTCTTGATCGGATTGTGATGGAGATGAATGCTGGGACAATGACAAAGAATGTTCCTCTTGCTCGGATTCAACCTCCCACACTTTCGGATTCATGGTTCTCCTCCGTTTTGGATGTAATGTCTCTGGAAACATAATGAAAGTTAGATCGTTCAAGCACATTTCATAATCGAGAAAGACGACTTGACGTGAGAGACTAATACAGACCTGACATGAACTGAGTAGAGTGTTTTGTCTCCAATTTTGGTTCATGGTCTTCCTTCCTAAGTAGCTCTATGTTGTTCCCCATAAGCTTAGTCTTCTGCTTCAAAGAAAAAAACTAAACAATATAGCAATTACAAGTTGATTACAAGGCAATTAAAACTTCAGCACTTGAGCCGTTGTGTTTTCGTACCATGCCGCTCTGATCTTCTTTCAAAGAATTCCTACTTTGATTATTCCAGTGTTTTCCAAAAATTTTGCACATCGAAACATTGTACCGGCCATTTGGATGCTCTGCTCCGAGTTGCAAGACCAACAAATCATTGAGGGGTCGTTCATCCTCCCCACACCTATGAATTCCAAAGCAAAAACCACAGAGAACAAATTAATCAAGGAATCTGAACCAGGAATGTGGCTCAATGTCTATAAAGTTTTGCGCTAAACTACCCTCCATATATGGCAATGTCCGAGTCTGCAACCACAGCTGTGTGAGAAAATCTCCCTTGAGGTTGCTGACCGCACGTATCGAGCTGAGTCCACGAGCAAGTACATAAATCAAGCACCCAAGCATCATTGTAGTATTGTCTATCTCCAACCCCACCAAGGATGTACACCTGCAAATTGGAAAGAATCAGTCGTGGCCTCGAAACAAAAGTAACAGACAACATGGTTTAAAGGTTCTGATTGTTTTGGATGTTGAATATTAACCGCAGCATGATGACTTGCCTTTGTGGCAATATTAACTGCAGCATGACCTGCCCGAACACCAGGTGAAGATCCTTGAACTGATAGCTATTGACAAAAAAGATGAAAGAGCCATTGAGACACAAATCATTGCCAATTTCCAAAACAGTATAGTTGAAAGAAAGATTTATACTTTAGACCAAGTTAGTGAATGCACATCGAGCATATCGACGCCCCCTTGATAACGGTCTCCACAGTCACCGCCGTAAACAAACAGCTTGTGACCAACAGCTGTAGCAGAGTGGCTATCCCTAGGGACTGGAATATCACCCCTCACCTCAATATTCATCCACACCATAGTCTTGAGGTCTAGAATGTGCAGATCATTCAAGTAATTCGATTCGCCCTCTCCACTTCCCCCGAAGATAACCAGTTTGTCATCACCAACGAGCGTAGCCGTGTGACTTTCTCGAGGCGACGGTGGATTCCCTTTGCATTCAGGTTGTACCCATTCCTTGGTACCAAGATCCAAAATGTGGAGATCATTTACCTTCTTAGAGCCATTAGTACCACCAAAAACTATCATCTGGTTTCCAACAATTAAGGCGCCGTGGCTGTCTCTTGGGCCCGGACCCTGTCCGGTAGTTACCATGTTGGTCCAGACCATGGTGTCAAGATTTAGTACAAGAACATCACTGAAATGCAACCCCCCACAGCATCCCTAG

mRNA sequence

ATGATGTGTGAACAGGACGCCTCTGTATACTTTCCCATTGACAGTAGCAGTCATCAGGAAGCCAGAGTCGAAGGCGCCGTCAACTCTTCCTCGAACCTCCGACCCAATCTGAAACAAACACAACGACAGAAGACTTGTGTTCTTTCACCGGACGAACGACATGGAGAAGCTGATGTTGTTCGGTCTTTAGTTGATTCTGGTGTCCAAAATATGAAAAATCTTGCTGTGGAGTGGTTTGGACAACATTTCGGAACTCGGAGACTTTTCGAACTGGGGTCTGTTCTTGATCGGATTGTGATGGAGATGAATGCTGGGACAATGACAAAGAATGTTCCTCTTGCTCGGATTCAACCTCCCACACTTTCGGATTCATGGTTCTCCTCCGTTTTGGATGAATGTGGCTCAATGTCTATAAAGTTTTGCGCTAAACTACCCTCCATATATGGCAATGTCCGAGTCTGCAACCACAGCTGTGTGAGAAAATCTCCCTTGAGGTTGCTGACCGCACGTATCGAGCTGAGTCCACGAGCAATATTGTCTATCTCCAACCCCACCAAGGATGTACACCTGCAAATTGGAAAGAATCAGTCGTGGCCTCGAAACAAAAGTAACAGACAACATGGTTTAAAGCATGACCTGCCCGAACACCAGGTGAAGATCCTTGAACTGATAGCTATTGACAAAAAAGATGAAAGAGCCATTGAGACACAAATCATTGCCAATTTCCAAAACAGTATAGTTGAAAGAAAGATTTATACTTTAGACCAAATCATTCAAGTAATTCGATTCGCCCTCTCCACTTCCCCCGAAGATAACCAGTTTGTCATCACCAACGAGCGTAGCCGTGTGACTTTCTCGAGGCGACGGTGGATTCCCTTTGCATTCAGGTTGTACCCATTCCTTGGTACCAAGATCCAAAATGTGGAGATCATTTACCTTCTTAGAGCCATTAGTACCACCAAAAACTATCATCTGGCGCCGTGGCTGTCTCTTGGGCCCGGACCCTGTCCGGTAGTTACCATGTTGGTCCAGACCATGGTGTCAAGATTTAGTACAAGAACATCACTGAAATGCAACCCCCCACAGCATCCCTAG

Coding sequence (CDS)

ATGATGTGTGAACAGGACGCCTCTGTATACTTTCCCATTGACAGTAGCAGTCATCAGGAAGCCAGAGTCGAAGGCGCCGTCAACTCTTCCTCGAACCTCCGACCCAATCTGAAACAAACACAACGACAGAAGACTTGTGTTCTTTCACCGGACGAACGACATGGAGAAGCTGATGTTGTTCGGTCTTTAGTTGATTCTGGTGTCCAAAATATGAAAAATCTTGCTGTGGAGTGGTTTGGACAACATTTCGGAACTCGGAGACTTTTCGAACTGGGGTCTGTTCTTGATCGGATTGTGATGGAGATGAATGCTGGGACAATGACAAAGAATGTTCCTCTTGCTCGGATTCAACCTCCCACACTTTCGGATTCATGGTTCTCCTCCGTTTTGGATGAATGTGGCTCAATGTCTATAAAGTTTTGCGCTAAACTACCCTCCATATATGGCAATGTCCGAGTCTGCAACCACAGCTGTGTGAGAAAATCTCCCTTGAGGTTGCTGACCGCACGTATCGAGCTGAGTCCACGAGCAATATTGTCTATCTCCAACCCCACCAAGGATGTACACCTGCAAATTGGAAAGAATCAGTCGTGGCCTCGAAACAAAAGTAACAGACAACATGGTTTAAAGCATGACCTGCCCGAACACCAGGTGAAGATCCTTGAACTGATAGCTATTGACAAAAAAGATGAAAGAGCCATTGAGACACAAATCATTGCCAATTTCCAAAACAGTATAGTTGAAAGAAAGATTTATACTTTAGACCAAATCATTCAAGTAATTCGATTCGCCCTCTCCACTTCCCCCGAAGATAACCAGTTTGTCATCACCAACGAGCGTAGCCGTGTGACTTTCTCGAGGCGACGGTGGATTCCCTTTGCATTCAGGTTGTACCCATTCCTTGGTACCAAGATCCAAAATGTGGAGATCATTTACCTTCTTAGAGCCATTAGTACCACCAAAAACTATCATCTGGCGCCGTGGCTGTCTCTTGGGCCCGGACCCTGTCCGGTAGTTACCATGTTGGTCCAGACCATGGTGTCAAGATTTAGTACAAGAACATCACTGAAATGCAACCCCCCACAGCATCCCTAG

Protein sequence

MMCEQDASVYFPIDSSSHQEARVEGAVNSSSNLRPNLKQTQRQKTCVLSPDERHGEADVVRSLVDSGVQNMKNLAVEWFGQHFGTRRLFELGSVLDRIVMEMNAGTMTKNVPLARIQPPTLSDSWFSSVLDECGSMSIKFCAKLPSIYGNVRVCNHSCVRKSPLRLLTARIELSPRAILSISNPTKDVHLQIGKNQSWPRNKSNRQHGLKHDLPEHQVKILELIAIDKKDERAIETQIIANFQNSIVERKIYTLDQIIQVIRFALSTSPEDNQFVITNERSRVTFSRRRWIPFAFRLYPFLGTKIQNVEIIYLLRAISTTKNYHLAPWLSLGPGPCPVVTMLVQTMVSRFSTRTSLKCNPPQHP

Homology

[Close]

BLAST of CcUC02G032000 vs. NCBI nr
Match: GER48588.1 (polyketide cyclase/dehydrase and lipid transportsuperfamily protein, partial [Striga asiatica])

HSP 1 Score: 62.4 bits (150), Expect = 9.4e-06
Identity = 47/180 (26.11%), Postives = 73/180 (40.56%), Query Frame = 0


Query: 145 PSIYGNVRVCNHSCVRKSPLRLLTARIELSPRAILSISNPTKDVHLQIGKNQSWPRNKSN 204
           PS +GN  +C+   +RKS LR LT+ +  SPR   ++ NP     L +  +  +      
Sbjct: 37  PSKHGNPHICDGGRMRKSTLRFLTSHVNSSPRRRDNVENPDVIKVLFVANSTQY------ 96

Query: 205 RQHGLKHDLPEHQVKILELIAIDKKDERAIETQIIANFQNSIVERKIYTLDQIIQVIRFA 264
             +  KHD P H  K       +        T      QN           Q++Q++   
Sbjct: 97  CLYSRKHDPPAHSAK-------NHHHHPPNHTXHARQIQNV----------QVVQIVGLP 156

Query: 265 LSTSPEDNQFVITNERSRVTFSRRRWIPFAFRLYPFLGTKIQNVEIIYLLRAISTTKNYH 324
             T+P+ +Q    N  SRV  + RRW P A    P    ++Q  E+  L   +   K+ H
Sbjct: 157 FPTAPKHDQPAFPNHCSRVALAGRRWAPAALGPGPLTAPQVQTSEVANLPGPVGAPKDKH 193

[Close]

BLAST of CcUC02G032000 vs. ExPASy TrEMBL
Match: A0A5A7QUL3 (Polyketide cyclase/dehydrase and lipid transportsuperfamily protein (Fragment) OS=Striga asiatica OX=4170 GN=STAS_25754 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-06
Identity = 47/180 (26.11%), Postives = 73/180 (40.56%), Query Frame = 0


Query: 145 PSIYGNVRVCNHSCVRKSPLRLLTARIELSPRAILSISNPTKDVHLQIGKNQSWPRNKSN 204
           PS +GN  +C+   +RKS LR LT+ +  SPR   ++ NP     L +  +  +      
Sbjct: 37  PSKHGNPHICDGGRMRKSTLRFLTSHVNSSPRRRDNVENPDVIKVLFVANSTQY------ 96

Query: 205 RQHGLKHDLPEHQVKILELIAIDKKDERAIETQIIANFQNSIVERKIYTLDQIIQVIRFA 264
             +  KHD P H  K       +        T      QN           Q++Q++   
Sbjct: 97  CLYSRKHDPPAHSAK-------NHHHHPPNHTXHARQIQNV----------QVVQIVGLP 156

Query: 265 LSTSPEDNQFVITNERSRVTFSRRRWIPFAFRLYPFLGTKIQNVEIIYLLRAISTTKNYH 324
             T+P+ +Q    N  SRV  + RRW P A    P    ++Q  E+  L   +   K+ H
Sbjct: 157 FPTAPKHDQPAFPNHCSRVALAGRRWAPAALGPGPLTAPQVQTSEVANLPGPVGAPKDKH 193

The following BLAST results are available for this feature:

BLAST of CcUC02G032000 vs. NCBI nr


Match Name	E-value	Identity	Description
GER48588.1	9.4e-06	26.11	polyketide cyclase/dehydrase and lipid transportsuperfamily protein, partial [St...	[more]

BLAST of CcUC02G032000 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G032000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7QUL3	4.5e-06	26.11	Polyketide cyclase/dehydrase and lipid transportsuperfamily protein (Fragment) O...	[more]

BLAST of CcUC02G032000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G032000.1	CcUC02G032000.1	mRNA