CcUC02G031780 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G031780
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr02: 27526202 .. 27526459 (-)
RNA-Seq Expression	CcUC02G031780
Synteny	CcUC02G031780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCATCAGCCAACAACAAGACACAAAAGCGCCCCAAGTCGCCCTCCTGCTGGTTCTCCATCTTCGGCTTGTTCAAGTCTCGAGATGGCGGAAGAAGGCGGGACGATACGATGACAATGGAAGATACACGAAAGGTGTGGCCGAGCGATGGCGACAAAGGTCGACACTGGGTGGCTGAGCCTGGCATTGATAGAAAAGCCAAAGCTTATATCGATAAGATCCATTATCAAATCCGCTCCTCCCAAACCGAATGA

mRNA sequence

ATGGCCTCATCAGCCAACAACAAGACACAAAAGCGCCCCAAGTCGCCCTCCTGCTGGTTCTCCATCTTCGGCTTGTTCAAGTCTCGAGATGGCGGAAGAAGGCGGGACGATACGATGACAATGGAAGATACACGAAAGGTGTGGCCGAGCGATGGCGACAAAGGTCGACACTGGGTGGCTGAGCCTGGCATTGATAGAAAAGCCAAAGCTTATATCGATAAGATCCATTATCAAATCCGCTCCTCCCAAACCGAATGA

Coding sequence (CDS)

ATGGCCTCATCAGCCAACAACAAGACACAAAAGCGCCCCAAGTCGCCCTCCTGCTGGTTCTCCATCTTCGGCTTGTTCAAGTCTCGAGATGGCGGAAGAAGGCGGGACGATACGATGACAATGGAAGATACACGAAAGGTGTGGCCGAGCGATGGCGACAAAGGTCGACACTGGGTGGCTGAGCCTGGCATTGATAGAAAAGCCAAAGCTTATATCGATAAGATCCATTATCAAATCCGCTCCTCCCAAACCGAATGA

Protein sequence

MASSANNKTQKRPKSPSCWFSIFGLFKSRDGGRRRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSSQTE

Homology

[Close]

BLAST of CcUC02G031780 vs. NCBI nr
Match: KAA0056089.1 (hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa] >TYJ96428.1 hypothetical protein E5676_scaffold546G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 156.8 bits (395), Expect = 8.5e-35
Identity = 73/85 (85.88%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MASSANNKTQKRPKSPSCWFSIFGLFKSRDGGRRRDDTMTMEDTRKVWPSDGDKGRHWVA 60
          MASSANNK QKRPKS SC FSIFGLFKSRDGG+R DD MTM+DTRKVWPSDGDKGRHWVA
Sbjct: 1  MASSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA 60

Query: 61 EPGIDRKAKAYIDKIHYQIRSSQTE 86
          EPGIDRKAKAYI+KIH+QIRSS+ +
Sbjct: 61 EPGIDRKAKAYIEKIHHQIRSSEPQ 85

[Close]

BLAST of CcUC02G031780 vs. NCBI nr
Match: KAG6586063.1 (hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.5 bits (306), Expect = 1.8e-24
Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = 0


Query: 3  SSANNKTQKRPKSPSCWFSIFGLFKSRDGGRRRDDTMTMEDTRKVWPSDGDKGRHWVAEP 62
          +S NNK QK PKSPSC+FSIF LF+SRD  +RRD+  T++D RKVWPSD D+ R+WVAEP
Sbjct: 2  ASTNNKRQK-PKSPSCFFSIFSLFRSRDSRKRRDE--TIDDMRKVWPSDEDRDRYWVAEP 61

Query: 63 GIDRKAKAYIDKIHYQIRSSQTE 86
          GIDRKAKAYIDKIH QIRSS TE
Sbjct: 62 GIDRKAKAYIDKIHTQIRSSGTE 81

[Close]

BLAST of CcUC02G031780 vs. NCBI nr
Match: KAG6599163.1 (hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.2 bits (300), Expect = 8.8e-24
Identity = 62/86 (72.09%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1  MASSANNKTQKRPKSPSCWFSIFGLFKSRDGGRR-RDDTMTMEDTRKVWPSDGDKGRHWV 60
          MASS  N  +++PKSPSC FSI  LFKSR   +R  DD + MEDTRKVWPSD DKGRHWV
Sbjct: 1  MASS--NDERRKPKSPSCCFSISTLFKSRARRKRWDDDAIAMEDTRKVWPSDDDKGRHWV 60

Query: 61 AEPGIDRKAKAYIDKIHYQIRSSQTE 86
          AEPGIDRKAKAYID+IHYQIR S  E
Sbjct: 61 AEPGIDRKAKAYIDRIHYQIRYSVAE 84

[Close]

BLAST of CcUC02G031780 vs. NCBI nr
Match: XP_021898970.1 (uncharacterized protein LOC110815469 [Carica papaya])

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-12
Identity = 47/75 (62.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 12 RPKSPSCWFSIFGLFKSRDGGRRRDDTMT-MEDTRKVWPSDGDKGRHWVAEPGIDRKAKA 71
          R K  S  FSIFGLFKSR   RR  D  T ++DTRKVWPSD DK R+WVAEPGIDRKA A
Sbjct: 5  RQKKSSSSFSIFGLFKSRRSHRRGGDDQTFVDDTRKVWPSDEDK-RNWVAEPGIDRKASA 64

Query: 72 YIDKIHYQIRSSQTE 86
          +I K H   R S++E
Sbjct: 65 FIAKFH-ATRVSESE 77

[Close]

BLAST of CcUC02G031780 vs. NCBI nr
Match: ESR41577.1 (hypothetical protein CICLE_v10013222mg [Citrus clementina])

HSP 1 Score: 70.9 bits (172), Expect = 6.2e-09
Identity = 40/83 (48.19%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 5  ANNKTQKRPKSPSCWFSIFGLFKSRDGGRRRDDTM--TMEDTRKVWPSDGDKGRHWVAEP 64
          A NK +K        FS+  +FKSR   RR +D         RK+WPSD DKG +WVAEP
Sbjct: 2  AGNKQKKSS------FSLLNMFKSRRTNRRWEDPWDDVGSTPRKIWPSDEDKGAYWVAEP 61

Query: 65 GIDRKAKAYIDKIHYQIRSSQTE 86
          GIDRKA A+I K H + R S++E
Sbjct: 62 GIDRKASAFITKFH-EARISESE 77

[Close]

BLAST of CcUC02G031780 vs. ExPASy TrEMBL
Match: A0A5D3BDY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00610 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.1e-35
Identity = 73/85 (85.88%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MASSANNKTQKRPKSPSCWFSIFGLFKSRDGGRRRDDTMTMEDTRKVWPSDGDKGRHWVA 60
          MASSANNK QKRPKS SC FSIFGLFKSRDGG+R DD MTM+DTRKVWPSDGDKGRHWVA
Sbjct: 1  MASSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA 60

Query: 61 EPGIDRKAKAYIDKIHYQIRSSQTE 86
          EPGIDRKAKAYI+KIH+QIRSS+ +
Sbjct: 61 EPGIDRKAKAYIEKIHHQIRSSEPQ 85

[Close]

BLAST of CcUC02G031780 vs. ExPASy TrEMBL
Match: A0A0A0LJ24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.6e-34
Identity = 73/85 (85.88%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MASSANNKTQKRPKSPSCWFSIFGLFKSRDGGRRRDDTMTMEDTRKVWPSDGDKGRHWVA 60
          MASSANNK QKR KS SC FSIF LFKSRDGG+R DD MTM+DTRKVWPSDGDKGRHWVA
Sbjct: 1  MASSANNKRQKRQKSTSCCFSIFSLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA 60

Query: 61 EPGIDRKAKAYIDKIHYQIRSSQTE 86
          EPGIDRKAKAYI+KIH+QIRSSQT+
Sbjct: 61 EPGIDRKAKAYIEKIHHQIRSSQTQ 85

[Close]

BLAST of CcUC02G031780 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.0e-09
Identity = 41/79 (51.90%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 6  NNKTQKRPKSPSCWFSIFGLFKSRDGGRRRDDTMT--------MEDTRKVWPSDGDKGRH 65
          NN+ +K   S    FSIF  FKSR G  R+ D           M  + KVWPSD DK  H
Sbjct: 4  NNRQKKSHSS----FSIFSFFKSRRG--RKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHH 63

Query: 66 WVAEPGIDRKAKAYIDKIH 77
          WVAEPGIDRKAK YID+I+
Sbjct: 64 WVAEPGIDRKAKDYIDRIY 76

[Close]

BLAST of CcUC02G031780 vs. ExPASy TrEMBL
Match: V4SLM0 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013222mg PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.0e-09
Identity = 40/83 (48.19%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 5  ANNKTQKRPKSPSCWFSIFGLFKSRDGGRRRDDTM--TMEDTRKVWPSDGDKGRHWVAEP 64
          A NK +K        FS+  +FKSR   RR +D         RK+WPSD DKG +WVAEP
Sbjct: 2  AGNKQKKSS------FSLLNMFKSRRTNRRWEDPWDDVGSTPRKIWPSDEDKGAYWVAEP 61

Query: 65 GIDRKAKAYIDKIHYQIRSSQTE 86
          GIDRKA A+I K H + R S++E
Sbjct: 62 GIDRKASAFITKFH-EARISESE 77

[Close]

BLAST of CcUC02G031780 vs. ExPASy TrEMBL
Match: W9R5Q4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022654 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.0e-09
Identity = 38/76 (50.00%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 7  NKTQKRPKSPSCWFSIFGLFKSRDGGRRRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDR 66
          N    R K  S +FS+F     R    RR D   +ED R+VWPSD D+GR WVAEPGIDR
Sbjct: 4  NNNSSRQKKGSSFFSLF-----RFKRNRRVDDYAVEDMRRVWPSDEDRGR-WVAEPGIDR 63

Query: 67 KAKAYIDKIHYQIRSS 83
          KA+A+I KIH  + ++
Sbjct: 64 KAEAFIAKIHKNMNTA 73

[Close]

BLAST of CcUC02G031780 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 7.3e-08
Identity = 35/69 (50.72%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 20 FSIFGLFKSRDGGRRRDDTMTMED---TRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIH 79
          FS+F  FK+R   R   D  + +D   TRK   SD DK R+WVAEPGIDRKA A+I K H
Sbjct: 13 FSLFSFFKTRRSHRVEADG-SWDDFGYTRKAMASDEDK-RYWVAEPGIDRKASAFIAKFH 72

Query: 80 YQIRSSQTE 86
             R S++E
Sbjct: 73 -ATRVSESE 78

[Close]

BLAST of CcUC02G031780 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 2.8e-07
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 44 TRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSSQTE 86
          TRK W SD DK R+WVAEPGIDRKA A+I K H   R S++E
Sbjct: 23 TRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHAS-RVSESE 62

The following BLAST results are available for this feature:

BLAST of CcUC02G031780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056089.1	8.5e-35	85.88	hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa] >TYJ9642...	[more]
KAG6586063.1	1.8e-24	73.49	hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6599163.1	8.8e-24	72.09	hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_021898970.1	2.0e-12	62.67	uncharacterized protein LOC110815469 [Carica papaya]	[more]
ESR41577.1	6.2e-09	48.19	hypothetical protein CICLE_v10013222mg [Citrus clementina]	[more]

BLAST of CcUC02G031780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G031780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BDY2	4.1e-35	85.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LJ24	1.6e-34	85.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1	[more]
A0A5A7SWT9	3.0e-09	51.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
V4SLM0	3.0e-09	48.19	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013222mg PE=4 ...	[more]
W9R5Q4	3.0e-09	50.00	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022654 PE=4 SV=1	[more]

BLAST of CcUC02G031780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	7.3e-08	50.72	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	2.8e-07	64.29	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 5..82
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 5..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G031780.1	CcUC02G031780.1	mRNA