CcUC02G031140 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G031140
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DUF4283 domain-containing protein
Location	CicolChr02: 26770194 .. 26770515 (+)
RNA-Seq Expression	CcUC02G031140
Synteny	CcUC02G031140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAAGGACAATGCTAAGCTAATACGAGCATTGAATGATCTGATTCAACTACACAATCCATCCATTGTATCGGTCTGTGGCTCCAAGTTCAGCAGTACTAATGTGCATACTCGCTTTTAACGATTCGTATTGTTGAAAGCCTGATGGCTACAATGGTGGTGTTTGGATGTTGTTAACCCAGCAAGATGTACAAATTGAAGTCAGTTCCTATATCCCACAGAAGGTTTCTGCATCAGTGCATTTCCATTCTAAACACAATGAATCAGTGCTATGTCTTTTGAATGAAGATATCGATACATCACTGCGACCGTGGGGACCGATA

mRNA sequence

GGGAAGGACAATGCTAAGCTAATACGAGCATTGAATGATCTGATTCAACTACACAATCCATCCATTGTATCGGTCTGTGGCTCCAAGTTCAGCAGTACTAATCCTGATGGCTACAATGGTGGTGTTTGGATGTTGTTAACCCAGCAAGATGTACAAATTGAAGTCAGTTCCTATATCCCACAGAAGGTTTCTGCATCAGTGCATTTCCATTCTAAACACAATGAATCAGTGCTATGTCTTTTGAATGAAGATATCGATACATCACTGCGACCGTGGGGACCGATA

Coding sequence (CDS)

GGGAAGGACAATGCTAAGCTAATACGAGCATTGAATGATCTGATTCAACTACACAATCCATCCATTGTATCGGTCTGTGGCTCCAAGTTCAGCAGTACTAATCCTGATGGCTACAATGGTGGTGTTTGGATGTTGTTAACCCAGCAAGATGTACAAATTGAAGTCAGTTCCTATATCCCACAGAAGGTTTCTGCATCAGTGCATTTCCATTCTAAACACAATGAATCAGTGCTATGTCTTTTGAATGAAGATATCGATACATCACTGCGACCGTGGGGACCGATA

Protein sequence

GKDNAKLIRALNDLIQLHNPSIVSVCGSKFSSTNPDGYNGGVWMLLTQQDVQIEVSSYIPQKVSASVHFHSKHNESVLCLLNEDIDTSLRPWGPI

Homology

[Close]

BLAST of CcUC02G031140 vs. NCBI nr
Match: KAA0034062.1 (uncharacterized protein E6C27_scaffold65G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 7.8e-21
Identity = 57/108 (52.78%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 3   DNAKLIRALNDLIQLHNPSIVSVCGSKFS-----------------STNPDGYNGGVWML 62
           DNAKL+RAL DLIQLH PSIV + G+K +                 S+ PDGYNGGVW+L
Sbjct: 526 DNAKLMRALKDLIQLHEPSIVLIFGNKITGVDAVKVMQELAFCGSYSSRPDGYNGGVWLL 585

Query: 63  LTQQDVQIEVSSYIPQKVSASVHFHSKHNESVLCLLNEDIDTSLRPWG 94
           L++QDVQ +V+SY PQ+VSASV FHS+ N       N D +TS  PWG
Sbjct: 586 LSKQDVQTKVNSYSPQQVSASVTFHSETNVQPFSPSNADTETSSGPWG 633

[Close]

BLAST of CcUC02G031140 vs. NCBI nr
Match: KAG7030785.1 (hypothetical protein SDJN02_04822, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-20
Identity = 57/110 (51.82%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 1   GKDNAKLIRALNDLIQLHNPSIVSVCGSKFSST-----------------NPDGYNGGVW 60
           G DNA L++AL DLIQLH PSIV + G+K S                    PDGYNGGVW
Sbjct: 505 GTDNANLMQALKDLIQLHEPSIVLIFGTKISGAEAEHVVRELSFCGSYCRKPDGYNGGVW 564

Query: 61  MLLTQQDVQIEVSSYIPQKVSASVHFHSKHNESVLCLLNEDIDTSLRPWG 94
           +LL++QDVQIEV SY PQ+VSASV+F S  N       N D +TS  PWG
Sbjct: 565 LLLSRQDVQIEVDSYSPQQVSASVYFGSNTNRPAFSPPNVDTETSSGPWG 614

[Close]

BLAST of CcUC02G031140 vs. NCBI nr
Match: KAG6600114.1 (hypothetical protein SDJN03_05347, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-20
Identity = 57/110 (51.82%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 1   GKDNAKLIRALNDLIQLHNPSIVSVCGSKFSST-----------------NPDGYNGGVW 60
           G DNA L++AL DLIQLH PSIV + G+K S                    PDGYNGGVW
Sbjct: 505 GTDNANLMQALKDLIQLHEPSIVLIFGTKISGAEAEHVVRELSFCGSYCRKPDGYNGGVW 564

Query: 61  MLLTQQDVQIEVSSYIPQKVSASVHFHSKHNESVLCLLNEDIDTSLRPWG 94
           +LL++QDVQIEV SY PQ+VSASV+F S  N       N D +TS  PWG
Sbjct: 565 LLLSRQDVQIEVDSYSPQQVSASVYFGSNTNRPAFSPPNVDTETSSGPWG 614

[Close]

BLAST of CcUC02G031140 vs. NCBI nr
Match: KGN50455.1 (hypothetical protein Csa_000357 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 56/108 (51.85%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 3   DNAKLIRALNDLIQLHNPSIVSVCGSKFS-----------------STNPDGYNGGVWML 62
           DNAKL+RAL DLIQLH PSIV + G+K S                 S+ PDGYNGGVW+L
Sbjct: 525 DNAKLMRALKDLIQLHEPSIVLIFGNKISGVDTDKVMRELAFCGSYSSKPDGYNGGVWLL 584

Query: 63  LTQQDVQIEVSSYIPQKVSASVHFHSKHNESVLCLLNEDIDTSLRPWG 94
           L++QDVQ +V+S+  Q+VSASV FHS+ N       N D  TS  PWG
Sbjct: 585 LSKQDVQTKVNSFSSQQVSASVTFHSETNVQPFSPSNADTKTSSGPWG 632

[Close]

BLAST of CcUC02G031140 vs. NCBI nr
Match: KAA0034059.1 (hypothetical protein E6C27_scaffold65G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 2.1e-18
Identity = 58/105 (55.24%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 1   GKDNAKLIRALNDLIQLHNPSIVSVCGSKFSSTN-----------------PDGYNGGVW 60
           G D AKLI+A   LI+L  PSIV + GSK SS +                 PDGYNGGVW
Sbjct: 503 GMDIAKLIQASKYLIRLDEPSIVLIFGSKISSADAEEVVRELAFNGSYCRKPDGYNGGVW 562

Query: 61  MLLTQQDVQIEVSSYIPQKVSASVHFHSKHNESVLCLLNEDIDTS 89
           M+L+ QDV+IEVSSY PQKVSASV+F SK NE  + LL+ED +TS
Sbjct: 563 MILSGQDVEIEVSSYSPQKVSASVYFRSKLNEPEVELLDEDTETS 607

[Close]

BLAST of CcUC02G031140 vs. ExPASy TrEMBL
Match: A0A5A7SSJ3 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00480 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.8e-21
Identity = 57/108 (52.78%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 3   DNAKLIRALNDLIQLHNPSIVSVCGSKFS-----------------STNPDGYNGGVWML 62
           DNAKL+RAL DLIQLH PSIV + G+K +                 S+ PDGYNGGVW+L
Sbjct: 526 DNAKLMRALKDLIQLHEPSIVLIFGNKITGVDAVKVMQELAFCGSYSSRPDGYNGGVWLL 585

Query: 63  LTQQDVQIEVSSYIPQKVSASVHFHSKHNESVLCLLNEDIDTSLRPWG 94
           L++QDVQ +V+SY PQ+VSASV FHS+ N       N D +TS  PWG
Sbjct: 586 LSKQDVQTKVNSYSPQQVSASVTFHSETNVQPFSPSNADTETSSGPWG 633

[Close]

BLAST of CcUC02G031140 vs. ExPASy TrEMBL
Match: A0A0A0KLB0 (DUF4283 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175790 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.3e-20
Identity = 56/108 (51.85%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 3   DNAKLIRALNDLIQLHNPSIVSVCGSKFS-----------------STNPDGYNGGVWML 62
           DNAKL+RAL DLIQLH PSIV + G+K S                 S+ PDGYNGGVW+L
Sbjct: 525 DNAKLMRALKDLIQLHEPSIVLIFGNKISGVDTDKVMRELAFCGSYSSKPDGYNGGVWLL 584

Query: 63  LTQQDVQIEVSSYIPQKVSASVHFHSKHNESVLCLLNEDIDTSLRPWG 94
           L++QDVQ +V+S+  Q+VSASV FHS+ N       N D  TS  PWG
Sbjct: 585 LSKQDVQTKVNSFSSQQVSASVTFHSETNVQPFSPSNADTKTSSGPWG 632

[Close]

BLAST of CcUC02G031140 vs. ExPASy TrEMBL
Match: A0A5A7SY10 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00450 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18
Identity = 58/105 (55.24%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 1   GKDNAKLIRALNDLIQLHNPSIVSVCGSKFSSTN-----------------PDGYNGGVW 60
           G D AKLI+A   LI+L  PSIV + GSK SS +                 PDGYNGGVW
Sbjct: 503 GMDIAKLIQASKYLIRLDEPSIVLIFGSKISSADAEEVVRELAFNGSYCRKPDGYNGGVW 562

Query: 61  MLLTQQDVQIEVSSYIPQKVSASVHFHSKHNESVLCLLNEDIDTS 89
           M+L+ QDV+IEVSSY PQKVSASV+F SK NE  + LL+ED +TS
Sbjct: 563 MILSGQDVEIEVSSYSPQKVSASVYFRSKLNEPEVELLDEDTETS 607

[Close]

BLAST of CcUC02G031140 vs. ExPASy TrEMBL
Match: A0A6J1FN13 (uncharacterized protein LOC111446932 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446932 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.0e-18
Identity = 53/93 (56.99%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 3   DNAKLIRALNDLIQLHNPSIVSVCGSKFSSTN-----------------PDGYNGGVWML 62
           DNAKL+RAL DLIQLH PSIV + G+K S  +                 PDGY GG W+L
Sbjct: 483 DNAKLMRALKDLIQLHKPSIVLIFGTKISGADADHVVRELAFDGSYCRKPDGYKGGAWLL 542

Query: 63  LTQQDVQIEVSSYIPQKVSASVHFHSKHNESVL 79
           L+QQDVQIEVSSY PQ+VSASV  HSK N++V+
Sbjct: 543 LSQQDVQIEVSSYSPQQVSASVILHSKPNKAVI 575

[Close]

BLAST of CcUC02G031140 vs. ExPASy TrEMBL
Match: A0A6J1FU80 (uncharacterized protein LOC111446932 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446932 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.0e-18
Identity = 53/93 (56.99%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 3   DNAKLIRALNDLIQLHNPSIVSVCGSKFSSTN-----------------PDGYNGGVWML 62
           DNAKL+RAL DLIQLH PSIV + G+K S  +                 PDGY GG W+L
Sbjct: 485 DNAKLMRALKDLIQLHKPSIVLIFGTKISGADADHVVRELAFDGSYCRKPDGYKGGAWLL 544

Query: 63  LTQQDVQIEVSSYIPQKVSASVHFHSKHNESVL 79
           L+QQDVQIEVSSY PQ+VSASV  HSK N++V+
Sbjct: 545 LSQQDVQIEVSSYSPQQVSASVILHSKPNKAVI 577

The following BLAST results are available for this feature:

BLAST of CcUC02G031140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034062.1	7.8e-21	52.78	uncharacterized protein E6C27_scaffold65G00480 [Cucumis melo var. makuwa]	[more]
KAG7030785.1	2.3e-20	51.82	hypothetical protein SDJN02_04822, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6600114.1	2.3e-20	51.82	hypothetical protein SDJN03_05347, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN50455.1	1.9e-19	51.85	hypothetical protein Csa_000357 [Cucumis sativus]	[more]
KAA0034059.1	2.1e-18	55.24	hypothetical protein E6C27_scaffold65G00450 [Cucumis melo var. makuwa]	[more]

BLAST of CcUC02G031140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G031140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSJ3	3.8e-21	52.78	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A0A0KLB0	9.3e-20	51.85	DUF4283 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175790 PE=...	[more]
A0A5A7SY10	1.0e-18	55.24	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A6J1FN13	3.0e-18	56.99	uncharacterized protein LOC111446932 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FU80	3.0e-18	56.99	uncharacterized protein LOC111446932 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CcUC02G031140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G031140.1	CcUC02G031140.1	mRNA