CcUC02G030640 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G030640
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Monocarboxylate transporter 9
Location	CicolChr02: 26106565 .. 26106799 (-)
RNA-Seq Expression	CcUC02G030640
Synteny	CcUC02G030640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGTAATAGCCTTGGAAGTTCGAAGTCCCACATCGAAAAGAAGTGCGTAGTGAATATGGCCAGCGCCTATATAAAGCCATCAACGTTCCCGTTTCCAAAGCACGGAGCCGTGCGGTGAGCGCAGAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCGCCGCCATAAGCGGCATACGCCTATTTTTGGAGGGTCCTTCCTTCGGGACTGGTACCCTATAA

mRNA sequence

ATGTCACCTTGGAAGTTCGAAGTCCCACATCGAAAAGAAGTGCGTAGTGAATATGGCCAGCGCCTATATAAAGCCATCAACGTTCCCGTTTCCAAAGCACGGAGCCGTGCGGTGAGCGCAGAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCGCCGCCATAAGCGGCATACGCCTATTTTTGGAGGGTCCTTCCTTCGGGACTGGTACCCTATAA

Coding sequence (CDS)

ATGTCACCTTGGAAGTTCGAAGTCCCACATCGAAAAGAAGTGCGTAGTGAATATGGCCAGCGCCTATATAAAGCCATCAACGTTCCCGTTTCCAAAGCACGGAGCCGTGCGGTGAGCGCAGAGCGAACTATTCTTTCGCCTTTTACTAAAGAATACCGTGTGCTCGCCGCCATAAGCGGCATACGCCTATTTTTGGAGGGTCCTTCCTTCGGGACTGGTACCCTATAA

Protein sequence

MSPWKFEVPHRKEVRSEYGQRLYKAINVPVSKARSRAVSAERTILSPFTKEYRVLAAISGIRLFLEGPSFGTGTL

Homology

[Close]

BLAST of CcUC02G030640 vs. NCBI nr
Match: OMP02649.1 (monocarboxylate transporter 9 [Corchorus olitorius])

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-09
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 30 VSKARSRAVSAERTILSPFTKEYRVLAAISGIRLFLEGP-SFGTG 74
          + KARSRAVS ERTILSPFTKEYRVLAA+SGIRLFL GP  FGTG
Sbjct: 1  MGKARSRAVSTERTILSPFTKEYRVLAALSGIRLFLGGPFPFGTG 45

[Close]

BLAST of CcUC02G030640 vs. NCBI nr
Match: OMO58839.1 (hypothetical protein CCACVL1_25320, partial [Corchorus capsularis])

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-08
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 30 VSKARSRAVSAERTILSPFTKEYRVLAAISGIRLFLEGP-SFGTG 74
          + KARSRAVS ERTILSPFTKEYRVLAA+SGIRLFL GP   GTG
Sbjct: 1  MGKARSRAVSTERTILSPFTKEYRVLAALSGIRLFLGGPFPLGTG 45

[Close]

BLAST of CcUC02G030640 vs. NCBI nr
Match: KAA0057788.1 (monocarboxylate transporter 9 [Cucumis melo var. makuwa] >TYJ98472.1 monocarboxylate transporter 9 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 35/41 (85.37%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 31 SKARSRAVSAERTILSPFTKEYRVLAAISGIRLFLEGPSFG 72
          SKARSRAV  ERTILSPFTKEYRVLAA SGIRLFLEG  +G
Sbjct: 39 SKARSRAVRTERTILSPFTKEYRVLAAYSGIRLFLEGFLYG 79

[Close]

BLAST of CcUC02G030640 vs. NCBI nr
Match: PPR85392.1 (hypothetical protein GOBAR_AA35300 [Gossypium barbadense])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 32  KARSRAVSAERTILSPFTKEYRVLAAISGIRLFLEGPSF 71
           KARSRAV  ERTILSPFTKEYRVLAA+ GIRLFLEG SF
Sbjct: 106 KARSRAVGTERTILSPFTKEYRVLAALCGIRLFLEGCSF 144

[Close]

BLAST of CcUC02G030640 vs. NCBI nr
Match: KAG8498941.1 (hypothetical protein CXB51_005368 [Gossypium anomalum])

HSP 1 Score: 64.3 bits (155), Expect = 5.1e-07
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 32  KARSRAVSAERTILSPFTKEYRVLAAISGIRLFLEGPSF 71
           KARSRAV  ERTILSPFTKEYRVLAA+ GI LFLEG SF
Sbjct: 209 KARSRAVGTERTILSPFTKEYRVLAALCGIHLFLEGCSF 247

[Close]

BLAST of CcUC02G030640 vs. ExPASy TrEMBL
Match: A0A1R3K6E7 (Monocarboxylate transporter 9 OS=Corchorus olitorius OX=93759 GN=COLO4_10930 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-09
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 30 VSKARSRAVSAERTILSPFTKEYRVLAAISGIRLFLEGP-SFGTG 74
          + KARSRAVS ERTILSPFTKEYRVLAA+SGIRLFL GP  FGTG
Sbjct: 1  MGKARSRAVSTERTILSPFTKEYRVLAALSGIRLFLGGPFPFGTG 45

[Close]

BLAST of CcUC02G030640 vs. ExPASy TrEMBL
Match: A0A1R3GLA3 (Uncharacterized protein (Fragment) OS=Corchorus capsularis OX=210143 GN=CCACVL1_25320 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 30 VSKARSRAVSAERTILSPFTKEYRVLAAISGIRLFLEGP-SFGTG 74
          + KARSRAVS ERTILSPFTKEYRVLAA+SGIRLFL GP   GTG
Sbjct: 1  MGKARSRAVSTERTILSPFTKEYRVLAALSGIRLFLGGPFPLGTG 45

[Close]

BLAST of CcUC02G030640 vs. ExPASy TrEMBL
Match: A0A5A7URK2 (Monocarboxylate transporter 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00740 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.0e-08
Identity = 35/41 (85.37%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 31 SKARSRAVSAERTILSPFTKEYRVLAAISGIRLFLEGPSFG 72
          SKARSRAV  ERTILSPFTKEYRVLAA SGIRLFLEG  +G
Sbjct: 39 SKARSRAVRTERTILSPFTKEYRVLAAYSGIRLFLEGFLYG 79

[Close]

BLAST of CcUC02G030640 vs. ExPASy TrEMBL
Match: A0A2P5W2R8 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA35300 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.5e-08
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 0


Query: 32  KARSRAVSAERTILSPFTKEYRVLAAISGIRLFLEGPSF 71
           KARSRAV  ERTILSPFTKEYRVLAA+ GIRLFLEG SF
Sbjct: 106 KARSRAVGTERTILSPFTKEYRVLAALCGIRLFLEGCSF 144

[Close]

BLAST of CcUC02G030640 vs. ExPASy TrEMBL
Match: A0A5D2NI52 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G233900v1 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-07
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 11 RKEVRSEYGQRLYKAINVPVSKARSRAVSAERTILSPFTKEYRVLAAISGIRLFLEGPSF 70
          RK+V +     LYKA    +S +RSR +S ERTILSPFTKEYRVL  +SGIR FLEG S 
Sbjct: 26 RKQVAA--SSHLYKARRRILSNSRSRVMSTERTILSPFTKEYRVLVTLSGIRQFLEGHSL 85

Query: 71 GTGTL 76
           +  +
Sbjct: 86 SSAPI 88

The following BLAST results are available for this feature:

BLAST of CcUC02G030640 vs. NCBI nr


Match Name	E-value	Identity	Description
OMP02649.1	4.2e-09	84.44	monocarboxylate transporter 9 [Corchorus olitorius]	[more]
OMO58839.1	2.1e-08	82.22	hypothetical protein CCACVL1_25320, partial [Corchorus capsularis]	[more]
KAA0057788.1	1.0e-07	85.37	monocarboxylate transporter 9 [Cucumis melo var. makuwa] >TYJ98472.1 monocarboxy...	[more]
PPR85392.1	1.3e-07	87.18	hypothetical protein GOBAR_AA35300 [Gossypium barbadense]	[more]
KAG8498941.1	5.1e-07	84.62	hypothetical protein CXB51_005368 [Gossypium anomalum]	[more]

BLAST of CcUC02G030640 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G030640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1R3K6E7	2.0e-09	84.44	Monocarboxylate transporter 9 OS=Corchorus olitorius OX=93759 GN=COLO4_10930 PE=...	[more]
A0A1R3GLA3	1.0e-08	82.22	Uncharacterized protein (Fragment) OS=Corchorus capsularis OX=210143 GN=CCACVL1_...	[more]
A0A5A7URK2	5.0e-08	85.37	Monocarboxylate transporter 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A2P5W2R8	6.5e-08	87.18	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA35300 PE=4 SV...	[more]
A0A5D2NI52	2.5e-07	55.38	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G233900v1 P...	[more]

BLAST of CcUC02G030640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G030640.1	CcUC02G030640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding