CcUC02G030630 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC02G030630
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUbiquitin conjugation factor E4
LocationCicolChr02: 26102318 .. 26106796 (+)
RNA-Seq ExpressionCcUC02G030630
SyntenyCcUC02G030630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCTTATGGCGGCGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTCTGCGCTCACCGCACGGCTCCGTGCTTTGGAAACGGGAACGTTGATGGCTTTATATAGGCGCTGGCCATATTCACTACGCACTTCTTTTCGATGTGGGACTTCGAACTTCCAAGGCTATTACTGACATTTTCTACTATGCAAGTATCAGAAACCAATGAAATGTGGCCATGCGGCATCCCATTCAGCTAGTATTTATCACTTTATTCGATTTCTTTAAACAAAAAAATCAGGCGCATATGTTTCTAAGCATAGTGTCAATGTCCTTGAAGTTTGAAATTTTGGAAGTCTTCTTTGAATGTTCAATGTCCGAATTTGTTTGATTTTGAGTGTTCAACTTAATCAAATTTGAAGTGTTGTGATGCTAAAGAGAGATGATGTCTTAGTATAAAAATGTTTTAAAACCTATTTAAAATGTTGGTTCTTTTAAAAAGCATTCAACTTATAAGAGATTTAGGCTCTATTAATGTAAAGAAAGATAGCACGAAAACCAAAAGACTATTTGGTAAAACAATTATTTAGGACATGTTTTGGAACAATCTTAAAATCGTTAAAATCACTTTTGTCATTTTTAAAATCACTTGAAAATACATTTTAATAACCCAAAATTAATTTAGTTTTCAATTTTACACTTTTATGCGACCAAAAGTATATTTTGTAAAAAAAAAAAAAAAACAAATACTTGGATAAAGGTTCAACCACCCAGTTCTTGGGCAAATAATTGGATGAACTCACACCTAGTTTGTCCCGATAATGTCAACTCTAATGTCTAAGTTGGTGTAAGAGTATCGATCATTTCTCATGTTTTTCTTTTATCGTTGGATTTAAATGTTCTAAAATATTGTTTTTTTTAAATACAAAAATAAATTTACTCTTAGTTTTAGATGAAAAGTAGCTTATTTAAAAAACTACCCTTAATTAAAAAAATAATAATAATAATAATAATTCAAAAGTACTCTGTTAATATATGAAAAAAAAAACTTCAAACTTGCATTAAATATATATAATTTGTTCAAATTGATCACAATTAATAGTAGGAACATTTTTTTCTTTTAATTTTTAAGGCTAAGAGTATTAATTGAAAGCATTAAGAGTATTCCCTATATATATATATATAGTTTAAGGATGTTTTATACAAAGTCTAAAGTTTTCTTTCTTCTTTTTTGTATAATTCGACTTATTTTAAACTTAGGTTAGGGTTGGGCCACTCTAAAGGGAGGAACCCTTCAAAAACGGAAGTATGGCGCATAAAGCGGCAAGCCCACAATATTCTTTAGTAAAAGGTGAAATAAATAAAAAAAGAATATAGGCCAAATAATGGTCACGCAAAATGTCTTATACTTATGACATTTCTCTTTTATCTTAACCAATGTGAGACTTTATATTTCCAATAGAAGCATCAACATTAAGTTTGTAAGTGTGAATCGTTGGTGGCTCTCAGTATGTAATTATATCTAATAGGTTTTTGAACTTTAAACATATTATCTCCTTTAAGAGGCCGTTTGGAACACCAATTTGGAATAGGTTGATTGGGTTTTTTGGGAGGTGTGTTAAACAATAATGGTGTTGGAGGATAAATTTGAACCAATCAAATTTCACCACGACCTCACAACAAAAGCTTACATTTTATTAAATTTTGGGGTGGGTCCCTAAAATGAAATTAGATGACAAATAAATGGAAAACTAAAAATTTGTCATGTGTCTTTTTGTTGGCTATTTGATCACCAAAACAAGCTAGATCTAATTCAACATAAGCCTAATCATAGTAAATTCGTAAATTGGATTAGTCTGAGTAAATTAAGTCGTTCTGGGCCAATGCCCAATCAAATTTAAGCCGGAAATTGGACCAAAGAAAAGGTTAGGCCAAGACCAAGTTATGGCCCAAACCATAGGTCCAATTCCTAGGCCCAAATGGGCAATCAACCCAAGCTTACAAGTTCCTGAAAACTCTATAAAAAGAGTTATTACATATAATTTTGAGAGTGATTGAAAGAACTGAAGACCAAAGCTTTGAAGATGGAAGCTCCAAAGATTTCTTAAACTCAAGATCAAATGACAAAGTTCTAAGTTTTTGAAGACTTCTAAGCTAGAATTGAACAACAAATATTCAGTGTTTTGGTTCAATGTTTATCCGTTAGATTCAATTCAATTTGGCTTTATATATAATGATATAGATTCAATTTTTCGAAAACAATTTGACTTCATATGTAATTATTGGAAAATATGAACCCATGATTGCCAAACATGATTGCCCAGAATTTACTTAAATTCATAATAAATCCGATTATGAAGTTCAATAACATCCAAAAGTTGAGGCTTCGGTAGCTATTTTGGTTTTACCAGTGTAAAACTATTTAGCCTCCAAATTTGAAAAAAAAAATGACAGAAAAAGAGGATCACTTAAAATGTCATTACAACATACATTCCACGAACATAAACTTTACAAATGCCATTAACAAACTTTATTTCATATAAATATGATGTGTTAATAATGAATGAAGTAATAAATTAACCAATTATAAATAATAAATAATGATCATATATTCATAATAAAGAATCAAATTAGAATTAATTGTTTGGTTATAAAAAACAATAAGTAATCAATTATTATTATTGAAGAATAATGTTTTTACTAAATAAATTTACATAATCCTAGTTTACTAATTAAATATATTTAAAATATTATATAATTAGCTAATTAATTAATAATTTATGCAAATAGATAATTTTATTCATTTAATAGATTTTGATTGTAAAAATAAAGTAAGTAAATATTTTAATTGGTTATTATTTATTTAGTAAAACAAATATTTATATTAATTTTGTTAAATTAATGTTAATTAATTAATTAACTATATACAAAGTGGAATTATATATAAAATGAAAAATAGAAGAAAATGAAGAGAAGAGAAAACCTACAATTTTAAAAGGGAAAAAAATTTTGTATGTGGAAAAGAGGATATCTGGCAATTGTTATTCTCGGACAAAGTGTTAAAAACACTGAAATAAACATGGTTTTTTTATGTCTATGTCAATTTCCACCATAATAATAAAATTTATATAAAAAAATAAAAACCCTCAAATCAAACGACTCGTTAAAGTACAATTTTTCTAGTTTTGCAAGTCAAAAGAAAGTACGTTTTCACATTTATGAATTCAATTTTTGTAGGGAGCCCGGAGAAGTTTTGAGCTAAATATTGTTATTATTATTATTATTTGGTTTTGAGCTATGTTTGAAAATGAAGTGTACATCAGCAGTCTTTGCATGATGTTATAAAGTATAAGAGATACTTTTCCAACTAAATGACTATACACATAAAGGTTCGCAAAAGTTTGATATCAAAGAGTATCAATTTTGTTTGTATGAAATTTCACACATCTTGTCGTCTAATGCAAATTCTACGAGGGTTTGTTTGTCAACCTATTCTTAATTTATGTTTCATTTTTTAAGTTCACCTACACGAAAGTTAATTGATATGGTACCGAACTAATTATACTCAAATACCTAAGTTAATATATGAATATATAATCTAGCTAAGCATAAAGTAAGCAAATACCTAAGTTAATACCTAAGTTAATATGAAGTAAGCAAATACCTAAGTTAATACCTAAGTTAATATGGTACCGAACTAATTATACTCAAATACCTAAGTAAATATATAAGTAAATATATGAATATATAATCTAGCTAAGCATAAAGTAAGCAAATACCTAAGTTAATATATGAATATATAATCTAGCTAAGCATAAAGTAAGAATTTTCCTCGGTTTTTGAAGAAAAGCATTGTACTTGTATAGGTTAACTCTTTGAAGAAAAGCATTGTACTTGTATAGGTTAACTCTTCTCTAATGCTTGTATAGGTTATTAATGTTATAATAGTCTTTCTTTAACACTTGTATTAACTCAATGTGACTGAAGAAATTACGAGCGCATAATTGAAAGTTACTGTCTAAATTACGAGCGCATAAATGAGATGAGAATTATCCGTATTTCAATATTTGGTCCCTAACTATTAAACTTTAAACAGTTTGAAAATTTATATCTATAATACTTCGGTCAGAATCGTATACGAATGTTTTTAAAATTAGAATGAAATAACTATGGTGACATAAAAAATTAAAAAAATTATAAACTTGTACTTGGACCCCAATTAACACCAATCAAAATTCAAAAGTTTCGGAAGTCGATTATAGGGTACCAGTCCCGAAGGAAGGACCCTCCAAAAATAGGCGTATGCCGCTTATGGCGGCGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTCTGCGCTCACCGCACGGCTCCGTGCTTTGGAAACGGGAACGTTGATGGCTTTATATAGGCGCTGGCCATATTCACTACGCACTTCTTTTCGATGTGGGACTTCGAACTTCCAAGGCTATTACTGA

mRNA sequence

ATGCCGCTTATGGCGGCGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTCTGCGCTCACCGCACGGCTCCGTGCTTTGGAAACGGGAACGGTACCAGTCCCGAAGGAAGGACCCTCCAAAAATAGGCGTATGCCGCTTATGGCGGCGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTCTGCGCTCACCGCACGGCTCCGTGCTTTGGAAACGGGAACGTTGATGGCTTTATATAGGCGCTGGCCATATTCACTACGCACTTCTTTTCGATGTGGGACTTCGAACTTCCAAGGCTATTACTGA

Coding sequence (CDS)

ATGCCGCTTATGGCGGCGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTCTGCGCTCACCGCACGGCTCCGTGCTTTGGAAACGGGAACGGTACCAGTCCCGAAGGAAGGACCCTCCAAAAATAGGCGTATGCCGCTTATGGCGGCGAGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTCTGCGCTCACCGCACGGCTCCGTGCTTTGGAAACGGGAACGTTGATGGCTTTATATAGGCGCTGGCCATATTCACTACGCACTTCTTTTCGATGTGGGACTTCGAACTTCCAAGGCTATTACTGA

Protein sequence

MPLMAASTRYSLVKGERIVRSALTARLRALETGTVPVPKEGPSKNRRMPLMAASTRYSLVKGERIVRSALTARLRALETGTLMALYRRWPYSLRTSFRCGTSNFQGYY
Homology
[Close]
BLAST of CcUC02G030630 vs. NCBI nr
Match: KAF7833781.1 (Mitochondrial chaperone BCS1 [Senna tora])

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-12
Identity = 57/107 (53.27%), Postives = 58/107 (54.21%), Query Frame = 0 

Query: 1   MPLMAASTRYSLVKGERIVRSALTARLRALET---------------------------- 60
           MPL AASTRYSLVKGERIVR  LTA LR   T                            
Sbjct: 11  MPLKAASTRYSLVKGERIVRFVLTAWLRDFCTDHASLFIVSSILKCCKLHDVGHRINNMG 70

Query: 61  -GTVPVPKEGPSKNRRMPLMAASTRYSLVKGERIVRSALTARLRALE 79
            G  P  K    KNRRMPL AASTRYSLVKGERIVRS L A LRA +
Sbjct: 71  MGVAPPTKRNLHKNRRMPLNAASTRYSLVKGERIVRSVLNAWLRAFD 117

[Close]
BLAST of CcUC02G030630 vs. NCBI nr
Match: RDX78837.1 (hypothetical protein CR513_40827, partial [Mucuna pruriens])

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06
Identity = 40/78 (51.28%), Postives = 46/78 (58.97%), Query Frame = 0 

Query: 1  MPLMAASTRYSLVKGERIVRSALTARLRALETGTVPVPKEGPSKNRRMPLMAASTRYSLV 60
          MPL    TRYSLVKGERIVR     RL++         +E   KN RM L    TRYSLV
Sbjct: 1  MPLNMTETRYSLVKGERIVRYVSITRLQSSN-------QENSFKNMRMLLKVTKTRYSLV 60

Query: 61 KGERIVRSALTARLRALE 79
          KGERIVR  L  +LR ++
Sbjct: 61 KGERIVRFVLITQLRLVD 71

[Close]
BLAST of CcUC02G030630 vs. NCBI nr
Match: KAF7803805.1 (Mitochondrial chaperone BCS1 [Senna tora])

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-06
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 39 KEGPSKNRRMPLMAASTRYSLVKGERIVRSALTARLRALET 80
          ++  SKNRRMPL+AASTRYSLVKGERIVRS LTARLRA ++
Sbjct: 47 RKSHSKNRRMPLLAASTRYSLVKGERIVRSVLTARLRACKS 87

[Close]
BLAST of CcUC02G030630 vs. NCBI nr
Match: KHG26645.1 (Violaxanthin de-epoxidase, chloroplastic [Gossypium arboreum])

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-04
Identity = 30/35 (85.71%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 40  EGPSKNRRMPLMAASTRYSLVKGERIVRSALTARL 75
           E PSKNRRMPL AASTRYSLVKGERIVR  L ARL
Sbjct: 522 EPPSKNRRMPLRAASTRYSLVKGERIVRFVLIARL 556

[Close]
BLAST of CcUC02G030630 vs. NCBI nr
Match: KAG0603333.1 (hypothetical protein M758_10G085700 [Ceratodon purpureus] >KAG0603334.1 hypothetical protein M758_10G085800 [Ceratodon purpureus])

HSP 1 Score: 54.3 bits (129), Expect = 7.6e-04
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 38  PKEGPSKNRRMPLMAASTRYSLVKGERIVRSALTARLRALETG 81
           P+EG SKNR MP+   S RYSLVKGERIVRS L+ RLR  ++G
Sbjct: 93  PREGRSKNRDMPVCVPSARYSLVKGERIVRSVLSTRLRDGQSG 135

[Close]
BLAST of CcUC02G030630 vs. ExPASy TrEMBL
Match: A0A371FKJ3 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_40827 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.0e-06
Identity = 40/78 (51.28%), Postives = 46/78 (58.97%), Query Frame = 0 

Query: 1  MPLMAASTRYSLVKGERIVRSALTARLRALETGTVPVPKEGPSKNRRMPLMAASTRYSLV 60
          MPL    TRYSLVKGERIVR     RL++         +E   KN RM L    TRYSLV
Sbjct: 1  MPLNMTETRYSLVKGERIVRYVSITRLQSSN-------QENSFKNMRMLLKVTKTRYSLV 60

Query: 61 KGERIVRSALTARLRALE 79
          KGERIVR  L  +LR ++
Sbjct: 61 KGERIVRFVLITQLRLVD 71

[Close]
BLAST of CcUC02G030630 vs. ExPASy TrEMBL
Match: A0A0B0PNT1 (Violaxanthin de-epoxidase, chloroplastic OS=Gossypium arboreum OX=29729 GN=F383_07932 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.7e-05
Identity = 30/35 (85.71%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 40  EGPSKNRRMPLMAASTRYSLVKGERIVRSALTARL 75
           E PSKNRRMPL AASTRYSLVKGERIVR  L ARL
Sbjct: 522 EPPSKNRRMPLRAASTRYSLVKGERIVRFVLIARL 556

[Close]
BLAST of CcUC02G030630 vs. ExPASy TrEMBL
Match: A0A200R9Y3 (Ubiquitin conjugation factor E4 OS=Macleaya cordata OX=56857 GN=BVC80_9057g93 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.2e-04
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 46 RRMPLMAASTRYSLVKGERIVRSALTARLRALETGTL 83
          RRMPL AASTRYSLVKGERIVRS LTA LRA +   L
Sbjct: 36 RRMPLCAASTRYSLVKGERIVRSVLTAWLRAFQMSEL 72

The following BLAST results are available for this feature:
BLAST of CcUC02G030630 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7833781.14.4e-1253.27Mitochondrial chaperone BCS1 [Senna tora][more]
RDX78837.12.1e-0651.28hypothetical protein CR513_40827, partial [Mucuna pruriens][more]
KAF7803805.13.6e-0678.05Mitochondrial chaperone BCS1 [Senna tora][more]
KHG26645.12.0e-0485.71Violaxanthin de-epoxidase, chloroplastic [Gossypium arboreum][more]
KAG0603333.17.6e-0465.12hypothetical protein M758_10G085700 [Ceratodon purpureus] >KAG0603334.1 hypothet... [more]
BLAST of CcUC02G030630 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC02G030630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A371FKJ31.0e-0651.28Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_40827 P... [more]
A0A0B0PNT19.7e-0585.71Violaxanthin de-epoxidase, chloroplastic OS=Gossypium arboreum OX=29729 GN=F383_... [more]
A0A200R9Y38.2e-0478.38Ubiquitin conjugation factor E4 OS=Macleaya cordata OX=56857 GN=BVC80_9057g93 PE... [more]
BLAST of CcUC02G030630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC02G030630.1CcUC02G030630.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010028 xanthophyll cycle
molecular_function GO:0046422 violaxanthin de-epoxidase activity