CcUC02G030560 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC02G030560
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionMonocarboxylate transporter 9
LocationCicolChr02: 26054210 .. 26055428 (+)
RNA-Seq ExpressionCcUC02G030560
SyntenyCcUC02G030560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCAGCACAGCGAACTCTTGGAATTCCCTAAAAAGCCGAAAAATGAAGAAGACAACAATACCCTTGGATGATGAAATTCCCACATCGAAAAGGAGTTGTTTTGCGAATCTGTCTCGCACCTATATAAAATCATCCAAGGCCCCGTTGAAAAAATCACGGAGCCGTGCGGTGAGCACAGAACGAACTATTTTTTCGCCTTTTACTAAAGAATACCGTGTGCCTACCGCCATAAGCGGCATACGCCAATTTTTTGGAGGGTCCTTCCTCCCGGATTGGTCCCTAGATCAAATTTTAGTAAAAAATGCGAATTTTAATTTTGAGATGTATAATAATGAAGGTTGAGAGAATTAATTGAGATTAATAATAATAATGAAGTTTGAGAGAGTTAGATTCTCATTGCAAAAGTTTGTCAGGCCTACAGTTGGTGCGGTAAACATTACCTACCCTTATGTGTTAGAAAGTTGAAACTAATGTATGATATTTCATTCTCACAAAATATTTTCAAAACATCGGTAGTATTTTTAAACTGTTTAGTCTGGACCCAAATTCATAAAGAAGCTTAGGAACAGCAGAGGGAGGGAGCCGAATAAAGCTTTCTTTTAAGAAAGATGACAATTCAGTCTTTTAAGACTAGTTCTAGTAGATAGAGTAATAAAGCATAGTCTCATAGAGGACTAGTTCTAGTAGATAGAGTAATAAAGCATAGTCTCATAGAGAAATAAAGCATAGTCCCAGTAGATNTGTTTTGCGAATCTGTCTCGCATCTATATAAAATCATCCAAGGCTCCGTTGAAAATATCACGGAGCCGTGCGGTGAGCACAGAACGAACTATTTTTTCGCCTTTTACTAAAGAATACCGTGTGCCTACCGCCATAAGCGGCATACGCCAATTTTTTGGAGGGTCCTTCCTCCCGGATTGGTCCCTAGATCAAATTTTAGTAAAAAATGCGAATTTTAATTTTGAGATGTATAATAATGAAGGTTGAGAGAATTAATTGAGATTAATAATAATAATGAAGTTTGAGAGAGTTAGATTCTCATTGCAAAAGTTTGTCAGGCCTACAGTTGGTGCGGTAAACATTACCTACCCTTATGTGTTAGAAAGTTGAAACTAATGTATGATATTTCATTCTCACAAAATATTTTCAGTCTGGACCCAAATTCATAAAGAAGCTTAGGAACAGCAGAGGGAGGGAGCCGAATAAAGCTTTCTTTTAA

mRNA sequence

AGCAGCACAGCGAACTCTTGGAATTCCCTAAAAAGCCGAAAAATGAAGAAGACAACAATACCCTTGGATGATGAAATTCCCACATCGAAAAGGAGTTGTTTTGCGAATCTGTCTCGCACCTATATAAAATCATCCAAGGCCCCGTTGAAAAAATCACGGAGCCGTGCGGTGAGCACAGAACGAACTATTTTTTCGCCTTTTACTAAAGAATACCGTGTGCCTACCGCCATAAGCGGCATACGCCAATTTTTTGGAGGGTCCTTCCTCCCGGATTGGTCCCTAGATCAAATTTTATCTGGACCCAAATTCATAAAGAAGCTTAGGAACAGCAGAGGGAGGGAGCCGAATAAAGCTTTCTTTTAA

Coding sequence (CDS)

AGCAGCACAGCGAACTCTTGGAATTCCCTAAAAAGCCGAAAAATGAAGAAGACAACAATACCCTTGGATGATGAAATTCCCACATCGAAAAGGAGTTGTTTTGCGAATCTGTCTCGCACCTATATAAAATCATCCAAGGCCCCGTTGAAAAAATCACGGAGCCGTGCGGTGAGCACAGAACGAACTATTTTTTCGCCTTTTACTAAAGAATACCGTGTGCCTACCGCCATAAGCGGCATACGCCAATTTTTTGGAGGGTCCTTCCTCCCGGATTGGTCCCTAGATCAAATTTTATCTGGACCCAAATTCATAAAGAAGCTTAGGAACAGCAGAGGGAGGGAGCCGAATAAAGCTTTCTTTTAA

Protein sequence

SSTANSWNSLKSRKMKKTTIPLDDEIPTSKRSCFANLSRTYIKSSKAPLKKSRSRAVSTERTIFSPFTKEYRVPTAISGIRQFFGGSFLPDWSLDQILSGPKFIKKLRNSRGREPNKAFF
Homology
[Close]
BLAST of CcUC02G030560 vs. NCBI nr
Match: KAG8480451.1 (hypothetical protein CXB51_025083 [Gossypium anomalum])

HSP 1 Score: 61.6 bits (148), Expect = 5.3e-06
Identity = 38/64 (59.38%), Postives = 44/64 (68.75%), Query Frame = 0 

Query: 26  IPTSKRSCFANLSRTYIKSSKAPLKKSRSRAVSTERTIFSPFTKEYRVPTAISGIRQFFG 85
           IP S ++  A L  ++I  S+  L +SRSRAVSTERTI SPFTKEYRV  A SGIR F G
Sbjct: 528 IPHSLKADKATLP-SFINESENQLIESRSRAVSTERTILSPFTKEYRVLAAYSGIRLFLG 587

Query: 86  GSFL 90
             FL
Sbjct: 588 AYFL 590

[Close]
BLAST of CcUC02G030560 vs. NCBI nr
Match: OMO58839.1 (hypothetical protein CCACVL1_25320, partial [Corchorus capsularis])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 51 KSRSRAVSTERTIFSPFTKEYRVPTAISGIRQFFGGSF 89
          K+RSRAVSTERTI SPFTKEYRV  A+SGIR F GG F
Sbjct: 3  KARSRAVSTERTILSPFTKEYRVLAALSGIRLFLGGPF 40

[Close]
BLAST of CcUC02G030560 vs. NCBI nr
Match: OMP02649.1 (monocarboxylate transporter 9 [Corchorus olitorius])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-05
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 51 KSRSRAVSTERTIFSPFTKEYRVPTAISGIRQFFGGSF 89
          K+RSRAVSTERTI SPFTKEYRV  A+SGIR F GG F
Sbjct: 3  KARSRAVSTERTILSPFTKEYRVLAALSGIRLFLGGPF 40

[Close]
BLAST of CcUC02G030560 vs. NCBI nr
Match: OMO58838.1 (hypothetical protein CCACVL1_25319 [Corchorus capsularis])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-05
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 51 KSRSRAVSTERTIFSPFTKEYRVPTAISGIRQFFGGSFLPD 92
          K+RSRAVSTERTI SPFTKEYRV  A SGIR F GG F+ D
Sbjct: 3  KARSRAVSTERTILSPFTKEYRVLAASSGIRLFLGGLFVLD 43

[Close]
BLAST of CcUC02G030560 vs. NCBI nr
Match: TYH51344.1 (hypothetical protein ES332_D10G266000v1 [Gossypium tomentosum])

HSP 1 Score: 57.8 bits (138), Expect = 7.6e-05
Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 0 

Query: 40 TYIKSSKAPLKKSRSRAVSTERTIFSPFTKEYRVPTAISGIRQFFGGSFL 90
          ++I  S+  L KSRSRAVSTERTI SPFTKEY V  A SGIR F    FL
Sbjct: 44 SFINESENQLPKSRSRAVSTERTILSPFTKEYLVLAAYSGIRLFLEAYFL 93

[Close]
BLAST of CcUC02G030560 vs. ExPASy TrEMBL
Match: A0A1R3GL63 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_25319 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.7e-06
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 51 KSRSRAVSTERTIFSPFTKEYRVPTAISGIRQFFGGSFLPD 92
          K+RSRAVSTERTI SPFTKEYRV  A SGIR F GG F+ D
Sbjct: 3  KARSRAVSTERTILSPFTKEYRVLAASSGIRLFLGGLFVLD 43

[Close]
BLAST of CcUC02G030560 vs. ExPASy TrEMBL
Match: A0A1R3GLA3 (Uncharacterized protein (Fragment) OS=Corchorus capsularis OX=210143 GN=CCACVL1_25320 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.7e-06
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 51 KSRSRAVSTERTIFSPFTKEYRVPTAISGIRQFFGGSF 89
          K+RSRAVSTERTI SPFTKEYRV  A+SGIR F GG F
Sbjct: 3  KARSRAVSTERTILSPFTKEYRVLAALSGIRLFLGGPF 40

[Close]
BLAST of CcUC02G030560 vs. ExPASy TrEMBL
Match: A0A1R3K6E7 (Monocarboxylate transporter 9 OS=Corchorus olitorius OX=93759 GN=COLO4_10930 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.7e-06
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 51 KSRSRAVSTERTIFSPFTKEYRVPTAISGIRQFFGGSF 89
          K+RSRAVSTERTI SPFTKEYRV  A+SGIR F GG F
Sbjct: 3  KARSRAVSTERTILSPFTKEYRVLAALSGIRLFLGGPF 40

[Close]
BLAST of CcUC02G030560 vs. ExPASy TrEMBL
Match: A0A5A7URK2 (Monocarboxylate transporter 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00740 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-05
Identity = 35/60 (58.33%), Postives = 40/60 (66.67%), Query Frame = 0 

Query: 27 PTSKRSCFANLSRTYIKSSKAPLKKSRSRAVSTERTIFSPFTKEYRVPTAISGIRQFFGG 86
          PTS+R+ +A    T IK +     K+RSRAV TERTI SPFTKEYRV  A SGIR F  G
Sbjct: 17 PTSERTRYATRG-TPIKCASKHHSKARSRAVRTERTILSPFTKEYRVLAAYSGIRLFLEG 75

[Close]
BLAST of CcUC02G030560 vs. ExPASy TrEMBL
Match: A0A5D2J9N5 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D10G266000v1 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-05
Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 0 

Query: 40 TYIKSSKAPLKKSRSRAVSTERTIFSPFTKEYRVPTAISGIRQFFGGSFL 90
          ++I  S+  L KSRSRAVSTERTI SPFTKEY V  A SGIR F    FL
Sbjct: 44 SFINESENQLPKSRSRAVSTERTILSPFTKEYLVLAAYSGIRLFLEAYFL 93

The following BLAST results are available for this feature:
BLAST of CcUC02G030560 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG8480451.15.3e-0659.38hypothetical protein CXB51_025083 [Gossypium anomalum][more]
OMO58839.11.2e-0578.95hypothetical protein CCACVL1_25320, partial [Corchorus capsularis][more]
OMP02649.11.2e-0578.95monocarboxylate transporter 9 [Corchorus olitorius][more]
OMO58838.11.2e-0575.61hypothetical protein CCACVL1_25319 [Corchorus capsularis][more]
TYH51344.17.6e-0564.00hypothetical protein ES332_D10G266000v1 [Gossypium tomentosum][more]
BLAST of CcUC02G030560 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC02G030560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1R3GL635.7e-0675.61Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_25319 PE=4 ... [more]
A0A1R3GLA35.7e-0678.95Uncharacterized protein (Fragment) OS=Corchorus capsularis OX=210143 GN=CCACVL1_... [more]
A0A1R3K6E75.7e-0678.95Monocarboxylate transporter 9 OS=Corchorus olitorius OX=93759 GN=COLO4_10930 PE=... [more]
A0A5A7URK23.7e-0558.33Monocarboxylate transporter 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5D2J9N53.7e-0564.00Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D10G266000v1 P... [more]
BLAST of CcUC02G030560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC02G030560.1CcUC02G030560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding