CcUC02G030050 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G030050
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	B3 domain-containing transcription factor VRN1-like
Location	CicolChr02: 25339190 .. 25340037 (+)
RNA-Seq Expression	CcUC02G030050
Synteny	CcUC02G030050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCAACGCCTCCCCACTTCTTTAAAGTTCTTTCTCACGCACTCACTCTACAAAAGCTTGTAAGTCAAATATCTTCTAATATTTTTTTCTTATGGAAATAATTTGTTCTAAACAAACCTGACTCCCCTTCTTTTATGGCCTTCAAGTTCTTTAAGCTCTTTGAATTGAACCCTCGACATTAGGCAATATTTTCCCTAGATTTAAGCTTTTTATTATCTTGTTCTATTGAAATTCCCACTTTTATAGGCACCAAAAGTTTTGGTTTTGTTGAATGAAGTTGATTGTTGTTTTCCACATTAAGCAATATTTTCCCTAGATTTAAGCCCCTTTTTTTTTCCTATTTCAGGAAGTTCCAACGAAATTTGTGAGACTACATGGAGAAACTCTGCAATCTGAGGAGGTTTGCCTTAAAGTAGTGAATGGGGTAAAATGGAAAATAGGATTAGAAAAAAGCAACCAAAAATTTTGGTTAGAAAAAGGATGGGCAGAGTTTGTAAAGTTTTATTCTATTGATATTAATTTTTTTGTAGTATTCCAATATAACGGCAACTCTTGCTTTCATGTTCTTATATTTGATAAAACTGCTACTGGGATTCAATATCCAAATGCTTCTAGAGAACTTAACAAAAACATATCTGAACAAGGGGAAATAAATAGGAAGAGAGAAGAAAATGGATGTTTCCAAATATTGGGTAACAACCAGAGATCAAAAAGGGAAGATAAAAGTCAAATTTTGCATTCACCAACTCCTAAGACCATGAAAAGAAGTGATCAAGCAGGTGGGAGTAAAGTGATTTCCAAAAAAAGTGGAGCTGAAGAAACATCACTTTCACTCTTCTGA

mRNA sequence

ATGGCTTCCTCAACGCCTCCCCACTTCTTTAAAGTTCTTTCTCACGCACTCACTCTACAAAAGCTTGAAGTTCCAACGAAATTTGTGAGACTACATGGAGAAACTCTGCAATCTGAGGAGGTTTGCCTTAAAGTAGTGAATGGGGTAAAATGGAAAATAGGATTAGAAAAAAGCAACCAAAAATTTTGGTTAGAAAAAGGATGGGCAGAGTTTGTAAAGTTTTATTCTATTGATATTAATTTTTTTGTAGTATTCCAATATAACGGCAACTCTTGCTTTCATGTTCTTATATTTGATAAAACTGCTACTGGGATTCAATATCCAAATGCTTCTAGAGAACTTAACAAAAACATATCTGAACAAGGGGAAATAAATAGGAAGAGAGAAGAAAATGGATGTTTCCAAATATTGGGTAACAACCAGAGATCAAAAAGGGAAGATAAAAGTCAAATTTTGCATTCACCAACTCCTAAGACCATGAAAAGAAGTGATCAAGCAGGTGGGAGTAAAGTGATTTCCAAAAAAAGTGGAGCTGAAGAAACATCACTTTCACTCTTCTGA

Coding sequence (CDS)

ATGGCTTCCTCAACGCCTCCCCACTTCTTTAAAGTTCTTTCTCACGCACTCACTCTACAAAAGCTTGAAGTTCCAACGAAATTTGTGAGACTACATGGAGAAACTCTGCAATCTGAGGAGGTTTGCCTTAAAGTAGTGAATGGGGTAAAATGGAAAATAGGATTAGAAAAAAGCAACCAAAAATTTTGGTTAGAAAAAGGATGGGCAGAGTTTGTAAAGTTTTATTCTATTGATATTAATTTTTTTGTAGTATTCCAATATAACGGCAACTCTTGCTTTCATGTTCTTATATTTGATAAAACTGCTACTGGGATTCAATATCCAAATGCTTCTAGAGAACTTAACAAAAACATATCTGAACAAGGGGAAATAAATAGGAAGAGAGAAGAAAATGGATGTTTCCAAATATTGGGTAACAACCAGAGATCAAAAAGGGAAGATAAAAGTCAAATTTTGCATTCACCAACTCCTAAGACCATGAAAAGAAGTGATCAAGCAGGTGGGAGTAAAGTGATTTCCAAAAAAAGTGGAGCTGAAGAAACATCACTTTCACTCTTCTGA

Protein sequence

MASSTPPHFFKVLSHALTLQKLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKFWLEKGWAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYPNASRELNKNISEQGEINRKREENGCFQILGNNQRSKREDKSQILHSPTPKTMKRSDQAGGSKVISKKSGAEETSLSLF

Homology

[Close]

BLAST of CcUC02G030050 vs. NCBI nr
Match: XP_023513190.1 (B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.8 bits (364), Expect = 7.3e-31
Identity = 66/106 (62.26%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 4   STPPHFFKV-LSHALTLQKLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKF 63
           S  PHFFKV L   LT  KL +P KFVR HGE L++EEV LKV +G +WK+GL K+++K 
Sbjct: 7   SATPHFFKVILPQTLTQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEKI 66

Query: 64  WLEKGWAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYP 109
           W EKGW EFVKFYS++I  F+ F+Y GNSCFHV+IFDKTA+ I+YP
Sbjct: 67  WFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYP 112

[Close]

BLAST of CcUC02G030050 vs. NCBI nr
Match: XP_022928091.1 (B3 domain-containing transcription factor VRN1-like [Cucurbita moschata])

HSP 1 Score: 142.9 bits (359), Expect = 2.8e-30
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 4   STPPHFFKV-LSHALTLQKLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKF 63
           S  PHFFKV L   L   KL +P KFVR HGE L++EEV LKV +G +WK+GL K+++K 
Sbjct: 7   SATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEKI 66

Query: 64  WLEKGWAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYP 109
           W EKGW EFVKFYS++I  F+ F+Y GNSCFHV+IFDKTA+ I+YP
Sbjct: 67  WFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYP 112

[Close]

BLAST of CcUC02G030050 vs. NCBI nr
Match: KAG6571413.1 (B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.9 bits (359), Expect = 2.8e-30
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 4   STPPHFFKV-LSHALTLQKLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKF 63
           S  PHFFKV L   L   KL +P KFVR HGE L++EEV LKV +G +WK+GL K+++K 
Sbjct: 7   SATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEKI 66

Query: 64  WLEKGWAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYP 109
           W EKGW EFVKFYS++I  F+ F+Y GNSCFHV+IFDKTA+ I+YP
Sbjct: 67  WFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYP 112

[Close]

BLAST of CcUC02G030050 vs. NCBI nr
Match: XP_022971710.1 (B3 domain-containing transcription factor VRN1-like [Cucurbita maxima])

HSP 1 Score: 142.5 bits (358), Expect = 3.6e-30
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 4   STPPHFFKV-LSHALTLQKLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKF 63
           S  PHFFKV L   L   KL +P KFVR HGE L++EEV LKV +G +WK+GL K+++K 
Sbjct: 7   SATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEKI 66

Query: 64  WLEKGWAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYP 109
           W EKGW EFVKFYS++I  F+ F+Y GNSCFHV+IFDKTA+ I+YP
Sbjct: 67  WFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYP 112

[Close]

BLAST of CcUC02G030050 vs. NCBI nr
Match: XP_022158241.1 (B3 domain-containing protein At4g01580-like [Momordica charantia])

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-28
Identity = 79/185 (42.70%), Postives = 112/185 (60.54%), Query Frame = 0


Query: 3   SSTPPHFFKV-LSHALTLQKLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQK 62
           +S  PHFFKV L H LT +KL VP KFV  HGE LQ+EEV LKV NG +WK+G+EKSN K
Sbjct: 14  TSATPHFFKVILPHILTQRKLNVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGK 73

Query: 63  FWLEKGWAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYPNASRELNKNISEQ 122
            W EKGW +FV+FYSI + +F+ F+Y  N+CFHV IFD +A+ I+YP       ++ SE+
Sbjct: 74  VWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEE 133

Query: 123 GE-----INRKRE----ENGCFQILGNNQRSKREDKSQILHSPTPKTMKRSDQAGGSKVI 178
            E       R+RE    +   + +  + +     D  ++L +   ++ K  D+    KVI
Sbjct: 134 FEDQILVYKRRREGKITQTNLYSVAHHKKMKISNDHDEVLRNEDFQSSKFKDRL---KVI 193

[Close]

BLAST of CcUC02G030050 vs. ExPASy Swiss-Prot
Match: Q8L3W1 (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.0e-14
Identity = 44/104 (42.31%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 6   PPHFFKVLSHALTLQ--KLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKFW 65
           P  FF  L  + T+Q  +L VP KFV    + L S  V L V +G  W++GL K++ K W
Sbjct: 2   PRPFFHKLIFSSTIQEKRLRVPDKFVSKFKDEL-SVAVALTVPDGHVWRVGLRKADNKIW 61

Query: 66  LEKGWAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQY 108
            + GW EFV  YSI I + ++F+Y GNS F V IF+ + + I Y
Sbjct: 62  FQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINY 104

[Close]

BLAST of CcUC02G030050 vs. ExPASy Swiss-Prot
Match: Q9XIB4 (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-12
Identity = 44/123 (35.77%), Postives = 72/123 (58.54%), Query Frame = 0


Query: 5   TPPHFFKVLSHALTLQK-LEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKFW 64
           T   F K++  +  ++K ++VP +FVR  G  L ++ V L+   G K  I +++   + W
Sbjct: 30  TVKKFIKIILLSRIIEKMMKVPARFVRF-GPKL-TDNVTLQTPVGFKRSIRIKRIGDEVW 89

Query: 65  LEKGWAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYP----NASRELNKNIS 123
            EKGW+EF + +S+    F+ F Y G+SCF V+IFD +A+ I+YP    + +RE   +  
Sbjct: 90  FEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPLDDTDDNREEVMDDD 149

[Close]

BLAST of CcUC02G030050 vs. ExPASy Swiss-Prot
Match: Q84R27 (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18960 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.9e-12
Identity = 38/101 (37.62%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 9   FFK-VLSHALTLQKLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKFWLEKG 68
           FFK VL   +  + +++P +FV+L G  L SE V L+   G K  I L++  ++ W  +G
Sbjct: 30  FFKLVLPSTMKDKMMKIPPRFVKLQGSKL-SEVVTLETPAGFKRSIKLKRIGEEIWFHEG 89

Query: 69  WAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYP 109
           W+EF + +SI+   F++F+Y  NS F V+IF+ +A   +YP
Sbjct: 90  WSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYP 129

[Close]

BLAST of CcUC02G030050 vs. ExPASy Swiss-Prot
Match: Q9ZSH7 (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 9   FFK-VLSHALTLQKLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKFWLEKG 68
           FFK VL   +  + + +P +FV+L G  L SE V L    G K  I L++  ++ W  +G
Sbjct: 30  FFKLVLPSTMKDKMMRIPPRFVKLQGSKL-SEVVTLVTPAGYKRSIKLKRIGEEIWFHEG 89

Query: 69  WAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYP 109
           W+EF + +SI+   F++F+Y  NS F V+IF+ +A    YP
Sbjct: 90  WSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYP 129

[Close]

BLAST of CcUC02G030050 vs. ExPASy Swiss-Prot
Match: Q851V5 (Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0621600 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.1e-08
Identity = 35/92 (38.04%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 8   HFFKVLSHALTLQKLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKFWLEKG 67
           +FFKV+      Q + +P KF     + +Q   + LK  NG    + ++K + K  L KG
Sbjct: 149 YFFKVMIGGFRRQ-MTIPYKFAENFRDQIQG-TIKLKARNGNTCSVLVDKCSNKLVLTKG 208

Query: 68  WAEFVKFYSIDINFFVVFQYNGNSCFHVLIFD 100
           WAEF   + I +  F+VF+Y GNS F V IFD
Sbjct: 209 WAEFANSHDIKMGDFLVFRYTGNSQFEVKIFD 238

[Close]

BLAST of CcUC02G030050 vs. ExPASy TrEMBL
Match: A0A6J1EJA7 (B3 domain-containing transcription factor VRN1-like OS=Cucurbita moschata OX=3662 GN=LOC111434979 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.4e-30
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 4   STPPHFFKV-LSHALTLQKLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKF 63
           S  PHFFKV L   L   KL +P KFVR HGE L++EEV LKV +G +WK+GL K+++K 
Sbjct: 7   SATPHFFKVILPQTLNQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEKI 66

Query: 64  WLEKGWAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYP 109
           W EKGW EFVKFYS++I  F+ F+Y GNSCFHV+IFDKTA+ I+YP
Sbjct: 67  WFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYP 112

[Close]

BLAST of CcUC02G030050 vs. ExPASy TrEMBL
Match: A0A6J1I6H9 (B3 domain-containing transcription factor VRN1-like OS=Cucurbita maxima OX=3661 GN=LOC111470377 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.8e-30
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 4   STPPHFFKV-LSHALTLQKLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKF 63
           S  PHFFKV L   L   KL +P KFVR HGE L++EEV LKV +G +WK+GL K+++K 
Sbjct: 7   SATPHFFKVILPQTLIQSKLAIPHKFVRKHGEALETEEVRLKVASGAEWKVGLTKNDEKI 66

Query: 64  WLEKGWAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYP 109
           W EKGW EFVKFYS++I  F+ F+Y GNSCFHV+IFDKTA+ I+YP
Sbjct: 67  WFEKGWEEFVKFYSVEIGHFLTFRYEGNSCFHVVIFDKTASEIEYP 112

[Close]

BLAST of CcUC02G030050 vs. ExPASy TrEMBL
Match: A0A6J1E0D8 (B3 domain-containing protein At4g01580-like OS=Momordica charantia OX=3673 GN=LOC111024773 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 7.4e-29
Identity = 79/185 (42.70%), Postives = 112/185 (60.54%), Query Frame = 0


Query: 3   SSTPPHFFKV-LSHALTLQKLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQK 62
           +S  PHFFKV L H LT +KL VP KFV  HGE LQ+EEV LKV NG +WK+G+EKSN K
Sbjct: 14  TSATPHFFKVILPHILTQRKLNVPKKFVSRHGEALQNEEVFLKVANGAEWKVGVEKSNGK 73

Query: 63  FWLEKGWAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYPNASRELNKNISEQ 122
            W EKGW +FV+FYSI + +F+ F+Y  N+CFHV IFD +A+ I+YP       ++ SE+
Sbjct: 74  VWFEKGWQQFVEFYSIGVGYFLTFRYETNACFHVTIFDPSASEIEYPMEDFGDIRSESEE 133

Query: 123 GE-----INRKRE----ENGCFQILGNNQRSKREDKSQILHSPTPKTMKRSDQAGGSKVI 178
            E       R+RE    +   + +  + +     D  ++L +   ++ K  D+    KVI
Sbjct: 134 FEDQILVYKRRREGKITQTNLYSVAHHKKMKISNDHDEVLRNEDFQSSKFKDRL---KVI 193

[Close]

BLAST of CcUC02G030050 vs. ExPASy TrEMBL
Match: A0A2I4F3Y0 (uncharacterized protein LOC108995281 OS=Juglans regia OX=51240 GN=LOC108995281 PE=4 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 3.6e-23
Identity = 70/171 (40.94%), Postives = 107/171 (62.57%), Query Frame = 0


Query: 7   PHFFK-VLSHALTLQKLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKFWLE 66
           PHFFK +L+ +L   KL +P +FVR HGE L S    L + NG +WK+ L + + + WL+
Sbjct: 19  PHFFKIILADSLRHGKLMIPRRFVRKHGEGL-SNLAFLNLPNGAEWKLELTRCDGELWLQ 78

Query: 67  KGWAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYPNASREL-NKNISEQGEI 126
           KGW EF+++YS+    F+VF+Y GNS FHVLIFD +AT + YP  S ++  KN  E+ ++
Sbjct: 79  KGWQEFLEYYSVKPGHFLVFRYEGNSRFHVLIFDMSATEVDYPTHSSQVKGKNFGEKLQV 138

Query: 127 NRKR--EENGCFQILGNNQRSKREDKSQILHSPTPKTMKRSDQAGGSKVIS 174
           + K   E +   +IL + +  KR +K  +   P P+ MKR++ +  +K IS
Sbjct: 139 SPKEETENDSSVEILDSFRTYKRREK--LPCDPRPQKMKRTNPSAKTKKIS 186

[Close]

BLAST of CcUC02G030050 vs. ExPASy TrEMBL
Match: A0A6P9F0R5 (B3 domain-containing transcription factor VRN1-like OS=Juglans regia OX=51240 GN=LOC108995280 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.6e-23
Identity = 68/171 (39.77%), Postives = 106/171 (61.99%), Query Frame = 0


Query: 7   PHFFK-VLSHALTLQKLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKFWLE 66
           PHFFK +L+ +L   KL +P +FVR HGE L S    L + NG +WK+ L + + + WL+
Sbjct: 19  PHFFKIILADSLRHGKLMIPRRFVRKHGEGL-SNLAFLNLPNGAEWKLELTRFDDEIWLQ 78

Query: 67  KGWAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYPNASREL-NKNISEQGEI 126
           KGW EF+++YS+    F+VF+Y GNSCFH+LIFD +AT I YP  + ++      E+ ++
Sbjct: 79  KGWQEFMEYYSVKPGHFLVFRYEGNSCFHILIFDMSATEIDYPTHNSQIKGGKFGEKLQV 138

Query: 127 NRKR--EENGCFQILGNNQRSKREDKSQILHSPTPKTMKRSDQAGGSKVIS 174
           + K   E +   +IL N +  KR +K  +   P P+ MKR++ +  ++ IS
Sbjct: 139 SPKEETENDSSMEILDNFRTYKRREK--LPCDPRPQKMKRTNPSAKTEKIS 186

[Close]

BLAST of CcUC02G030050 vs. TAIR 10
Match: AT3G18990.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.5e-15
Identity = 44/104 (42.31%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 6   PPHFFKVLSHALTLQ--KLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKFW 65
           P  FF  L  + T+Q  +L VP KFV    + L S  V L V +G  W++GL K++ K W
Sbjct: 2   PRPFFHKLIFSSTIQEKRLRVPDKFVSKFKDEL-SVAVALTVPDGHVWRVGLRKADNKIW 61

Query: 66  LEKGWAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQY 108
            + GW EFV  YSI I + ++F+Y GNS F V IF+ + + I Y
Sbjct: 62  FQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINY 104

[Close]

BLAST of CcUC02G030050 vs. TAIR 10
Match: AT1G49475.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 72.8 bits (177), Expect = 3.3e-13
Identity = 44/123 (35.77%), Postives = 72/123 (58.54%), Query Frame = 0


Query: 5   TPPHFFKVLSHALTLQK-LEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKFW 64
           T   F K++  +  ++K ++VP +FVR  G  L ++ V L+   G K  I +++   + W
Sbjct: 30  TVKKFIKIILLSRIIEKMMKVPARFVRF-GPKL-TDNVTLQTPVGFKRSIRIKRIGDEVW 89

Query: 65  LEKGWAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYP----NASRELNKNIS 123
            EKGW+EF + +S+    F+ F Y G+SCF V+IFD +A+ I+YP    + +RE   +  
Sbjct: 90  FEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPLDDTDDNREEVMDDD 149

[Close]

BLAST of CcUC02G030050 vs. TAIR 10
Match: AT3G18960.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 72.0 bits (175), Expect = 5.6e-13
Identity = 38/101 (37.62%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 9   FFK-VLSHALTLQKLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKFWLEKG 68
           FFK VL   +  + +++P +FV+L G  L SE V L+   G K  I L++  ++ W  +G
Sbjct: 30  FFKLVLPSTMKDKMMKIPPRFVKLQGSKL-SEVVTLETPAGFKRSIKLKRIGEEIWFHEG 89

Query: 69  WAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYP 109
           W+EF + +SI+   F++F+Y  NS F V+IF+ +A   +YP
Sbjct: 90  WSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYP 129

[Close]

BLAST of CcUC02G030050 vs. TAIR 10
Match: AT4G01580.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-12
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 9   FFK-VLSHALTLQKLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKFWLEKG 68
           FFK VL   +  + + +P +FV+L G  L SE V L    G K  I L++  ++ W  +G
Sbjct: 30  FFKLVLPSTMKDKMMRIPPRFVKLQGSKL-SEVVTLVTPAGYKRSIKLKRIGEEIWFHEG 89

Query: 69  WAEFVKFYSIDINFFVVFQYNGNSCFHVLIFDKTATGIQYP 109
           W+EF + +SI+   F++F+Y  NS F V+IF+ +A    YP
Sbjct: 90  WSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYP 129

[Close]

BLAST of CcUC02G030050 vs. TAIR 10
Match: AT4G33280.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.8e-06
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 21  KLEVPTKFVRLHGETLQSEEVCLKVVNGVKWKIGLEKSNQKFWLEK-GWAEFVKFYSIDI 80
           +L +P KF   H +    + V LK  +GV + +G+E+ ++K    + GW +FVK +S++ 
Sbjct: 36  RLVIPRKF-STHCKRKLPQIVTLKSPSGVTYNVGVEEDDEKTMAFRFGWDKFVKDHSLEE 95

Query: 81  NFFVVFQYNGNSCFHVLIFD 100
           N  +VF+++G S F VL+FD
Sbjct: 96  NDLLVFKFHGVSEFEVLVFD 114

The following BLAST results are available for this feature:

BLAST of CcUC02G030050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513190.1	7.3e-31	62.26	B3 domain-containing transcription factor VRN1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022928091.1	2.8e-30	61.32	B3 domain-containing transcription factor VRN1-like [Cucurbita moschata]	[more]
KAG6571413.1	2.8e-30	61.32	B3 domain-containing transcription factor VRN1, partial [Cucurbita argyrosperma ...	[more]
XP_022971710.1	3.6e-30	61.32	B3 domain-containing transcription factor VRN1-like [Cucurbita maxima]	[more]
XP_022158241.1	1.5e-28	42.70	B3 domain-containing protein At4g01580-like [Momordica charantia]	[more]

BLAST of CcUC02G030050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L3W1	5.0e-14	42.31	B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9XIB4	4.6e-12	35.77	B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49...	[more]
Q84R27	7.9e-12	37.62	B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18...	[more]
Q9ZSH7	2.3e-11	37.62	B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01...	[more]
Q851V5	9.1e-08	38.04	Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japoni...	[more]

BLAST of CcUC02G030050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJA7	1.4e-30	61.32	B3 domain-containing transcription factor VRN1-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1I6H9	1.8e-30	61.32	B3 domain-containing transcription factor VRN1-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1E0D8	7.4e-29	42.70	B3 domain-containing protein At4g01580-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A2I4F3Y0	3.6e-23	40.94	uncharacterized protein LOC108995281 OS=Juglans regia OX=51240 GN=LOC108995281 P...	[more]
A0A6P9F0R5	3.6e-23	39.77	B3 domain-containing transcription factor VRN1-like OS=Juglans regia OX=51240 GN...	[more]

BLAST of CcUC02G030050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18990.1	3.5e-15	42.31	AP2/B3-like transcriptional factor family protein	[more]
AT1G49475.1	3.3e-13	35.77	AP2/B3-like transcriptional factor family protein	[more]
AT3G18960.1	5.6e-13	37.62	AP2/B3-like transcriptional factor family protein	[more]
AT4G01580.1	1.6e-12	37.62	AP2/B3-like transcriptional factor family protein	[more]
AT4G33280.1	1.8e-06	36.25	AP2/B3-like transcriptional factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	SMART	SM01019	B3_2	coord: 9..101 e-value: 6.6E-14 score: 62.2
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 9..100 e-value: 2.6E-16 score: 59.3
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 7..101 score: 12.167423
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 7..99 e-value: 1.19103E-21 score: 82.7608
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 1..102 e-value: 4.3E-24 score: 86.4
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 3..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..186
None	No IPR available	PANTHER	PTHR31920:SF26	TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED	coord: 3..176
None	No IPR available	PANTHER	PTHR31920	B3 DOMAIN-CONTAINING	coord: 3..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G030050.1	CcUC02G030050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding