CcUC02G029940 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G029940
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr02: 25257980 .. 25259036 (+)
RNA-Seq Expression	CcUC02G029940
Synteny	CcUC02G029940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTTTATCAAGCTCCATAATTTTATAGAATTGAAAGTTTGTGTGCAAAAATAAATTTAACTGCAGAACATATCCAATATAATCATGAATTGACCCAAAGACTAGAGCGCAAACCGTAAAACCCAGATGTATTAATGCTGAATGATTACTAAATCTGAGATACAAGGAGTCTGGAAAAACATCATTCAAGTGTAAAACGGTAGTAGAACATAATACAAACATACATGAAAATCATAACAGCCAAAGGCAGGAAGATTTTCTTTTTCCTCTTTCTAATCTAGTTTTACTGCTATGCACTTTTGGGATAGCTAATTTCAAAATGAGTTCAAGAACCTTCAAGCGGAACTGCCATCACCTTTATCTTGTGATGATGAATCTGTTGCCAGTTTCTTTGTTGGGTTTGAGTCAGCACACTCTGAATTTGTTGAAACTCGTTTGACTCCCCTTCCGACAACACCAAGGTGCGTCACTCCAGTCGCGCCATTCGTGTGGGCAGTTGAGACTGTTGGAGAGTCAAATCCTCCATTGCTGTTAGCTGAACCCATTTGTGAGGAGTTGAACACCGCTGGAACTGGAGGTGTGATCTTCTCGATATTCGCCTTCGCTGATCCTATCCCGAGGATCTCTGAGAGAATTGACTTTGGGTTAGAGGCTAGCTGTTGCAGATCTTCGAGCTGTACAAAGACAAAACATTGATTAGATTTTTGCATTTCTCTGTCGGAGTTCACTTGCAGAAGTTACAATCTGAACTCGCCTTCTTTTCTAGCTCAACCAAAAGCCCAGATAGAGTTTCAATCTCAGATTGTTTCTCTGTTGCAGTATTGTCAGTGTCAGTCTGGGAGCCACTGGAGGATAGTGGGGCCTCTGGTTCTGACCCCGAAGTAGAAGAAGCTGTAGTTGGTACAATAATACTCTTTACTTCATCGGTCAGCCGCACCACACGTGACTTGCAAATAGATATTGCCTTCTGGCAATATGAAATGGCTTCCTGCGGCTGGGAACCAAACTCCAAACACAAGCATACACGAAAATTTCTGGAATTTTCAGTTTAA

mRNA sequence

ATGGATAACCTTCAAGCGGAACTGCCATCACCTTTATCTTGTGATGATGAATCTGTTGCCAGTTTCTTTGTTGGGTTTGAGTCAGCACACTCTGAATTTGTTGAAACTCGTTTGACTCCCCTTCCGACAACACCAAGGTGCGTCACTCCAGTCGCGCCATTCGTGTGGGCAGTTGAGACTGTTGGAGAGTCAAATCCTCCATTGCTGTTAGCTGAACCCATTTGTGAGGAGTTGAACACCGCTGGAACTGGAGGTATCTTCGAGCTGTACAAAGACAAAACATTGATTAGATTTTTGCATTTCTCTGTCGGAGTTCACTTGCAGAAGTTACAATCTGAACTCGCCTTCTTTTCTAGCTCAACCAAAAGCCCAGATAGAGTTTCAATCTCAGATTGTTTCTCTGTTGCAGTATTGTCAGTGTCAGTCTGGGAGCCACTGGAGGATAGTGGGGCCTCTGGTTCTGACCCCGAAGTAGAAGAAGCTGTAGTTGGTACAATAATACTCTTTACTTCATCGGTCAGCCGCACCACACGTGACTTGCAAATAGATATTGCCTTCTGGCAATATGAAATGGCTTCCTGCGGCTGGGAACCAAACTCCAAACACAAGCATACACGAAAATTTCTGGAATTTTCAGTTTAA

Coding sequence (CDS)

ATGGATAACCTTCAAGCGGAACTGCCATCACCTTTATCTTGTGATGATGAATCTGTTGCCAGTTTCTTTGTTGGGTTTGAGTCAGCACACTCTGAATTTGTTGAAACTCGTTTGACTCCCCTTCCGACAACACCAAGGTGCGTCACTCCAGTCGCGCCATTCGTGTGGGCAGTTGAGACTGTTGGAGAGTCAAATCCTCCATTGCTGTTAGCTGAACCCATTTGTGAGGAGTTGAACACCGCTGGAACTGGAGGTATCTTCGAGCTGTACAAAGACAAAACATTGATTAGATTTTTGCATTTCTCTGTCGGAGTTCACTTGCAGAAGTTACAATCTGAACTCGCCTTCTTTTCTAGCTCAACCAAAAGCCCAGATAGAGTTTCAATCTCAGATTGTTTCTCTGTTGCAGTATTGTCAGTGTCAGTCTGGGAGCCACTGGAGGATAGTGGGGCCTCTGGTTCTGACCCCGAAGTAGAAGAAGCTGTAGTTGGTACAATAATACTCTTTACTTCATCGGTCAGCCGCACCACACGTGACTTGCAAATAGATATTGCCTTCTGGCAATATGAAATGGCTTCCTGCGGCTGGGAACCAAACTCCAAACACAAGCATACACGAAAATTTCTGGAATTTTCAGTTTAA

Protein sequence

MDNLQAELPSPLSCDDESVASFFVGFESAHSEFVETRLTPLPTTPRCVTPVAPFVWAVETVGESNPPLLLAEPICEELNTAGTGGIFELYKDKTLIRFLHFSVGVHLQKLQSELAFFSSSTKSPDRVSISDCFSVAVLSVSVWEPLEDSGASGSDPEVEEAVVGTIILFTSSVSRTTRDLQIDIAFWQYEMASCGWEPNSKHKHTRKFLEFSV

Homology

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BLAST of CcUC02G029940 vs. ExPASy TrEMBL
Match: A0A453BP40 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.5e-05
Identity = 67/198 (33.84%), Postives = 85/198 (42.93%), Query Frame = 0


Query: 15  DDESVASFFVGFESAHSEFVETRLTPLPTTPRCVT--PVAPFVWAVETVGESNPPLLLAE 74
           D ES A+      SA    +  RL PLPTTPR VT  PV P V AV+ VGES P  L   
Sbjct: 46  DGESSAASLFEQGSAEIGLILARLMPLPTTPRSVTVLPVLPDVAAVDIVGESKP--LFTP 105

Query: 75  PICEELNTAGTGG----IFELYKDKTLIRFLHFSV---GVHLQKLQSELAFFSSSTKSPD 134
           PICEE+  A  G      F +      + F+  S+   GV +   +S  +FFS S   P 
Sbjct: 106 PICEEVKDAALGATALPAFCINPAFAAMLFIISSISELGVAIACSRSS-SFFSRSGNIPV 165

Query: 135 RVSIS---DCFSVAVLSVSVWEPLEDSGASGSDPEVEEAVVGTIILFTSSVSRTTRDLQI 194
             S S   D F  +  +V    PL  +  +                F  S     RDL  
Sbjct: 166 TTSSSSSIDNFFESPSAVDALSPLSANKVA-------------FAFFRLS----KRDLHN 223

Query: 195 DIAFWQYEMASCGWEPNS 201
           + AF QY +AS   + NS
Sbjct: 226 ETAFAQYGIASAILDANS 223

The following BLAST results are available for this feature:

BLAST of CcUC02G029940 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G029940 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC02G029940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A453BP40	6.5e-05	33.84	Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S...	[more]

BLAST of CcUC02G029940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G029940.1	CcUC02G029940.1	mRNA