CcUC02G029870 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G029870
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr02: 25224092 .. 25224882 (-)
RNA-Seq Expression	CcUC02G029870
Synteny	CcUC02G029870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTATCTCCATCGCATTGGAGTTTCTTCACTTACTTTCTCTATGCCCAAAAACCAACCTAATATCAATCTTCAATGTCGCATTCCTTGTAAGTAATTATAATTAATATTAACAATCTTTCTTTCTTTTGGTTAATGGTTGTTCATGATATCATTAATTTTTAGGCCAAGAAAATCCAACCACAAAAGTGCTATCAACATCCGTAGTTCAAGATCATAAGAATGTTGGCCAAGTTGACTATGACTGCTTCTTTGTCTCACAATTGCTTTAGAGGAGTTTCGATGTGTTGTAAAAGATTTAAACAATGCTAGTTATGGTAAATATCAATTTATAATAATTTATGTCTTTAATTTCTTCAAAGGAAAAATCCTTATGTGTTGTTAATTGTGGCAGTTTCGGTTACTATTACGAGTTCACAAATCAAATTTGTAGTTGAAATTGATCATATGGAAGTTATTCTAACTGGTAAGGTATATTTGTTTGAATTTCATATATATATATATATATAAAGAGAGAGAGATTGAAGTTGAAAAAATTTAGGGTATGAAGAAGTTAGTTTGGTATTGTTTTTGTAGGAAGGAGATTGCATAATTGGAGGCATTAAAGAAGGAGATGAAATTGAATGTGGAATTAGTCTTTATCCAATGGAAGTTTATCGTGCATTCACATCCAAAAGAGTATGGTTATTCAAGGCATGTGATCCCAATGGTTTGATATTGATCGGTCCTATGGGATTGTCTAATCATATTTCTTCATATTTTCCTGATGATTGCTATGGGGGGAATTGA

mRNA sequence

ATGTCTTATCTCCATCGCATTGGAGTTTCTTCACTTACTTTCTCTATGCCCAAAAACCAACCTAATATCAATCTTCAATGTCGCATTCCTTTTTCGGTTACTATTACGAGTTCACAAATCAAATTTGTAGTTGAAATTGATCATATGGAAGTTATTCTAACTGGTAAGGAAGGAGATTGCATAATTGGAGGCATTAAAGAAGGAGATGAAATTGAATGTGGAATTAGTCTTTATCCAATGGAAGTTTATCGTGCATTCACATCCAAAAGAGTATGGTTATTCAAGGCATGTGATCCCAATGGTTTGATATTGATCGGTCCTATGGGATTGTCTAATCATATTTCTTCATATTTTCCTGATGATTGCTATGGGGGGAATTGA

Coding sequence (CDS)

ATGTCTTATCTCCATCGCATTGGAGTTTCTTCACTTACTTTCTCTATGCCCAAAAACCAACCTAATATCAATCTTCAATGTCGCATTCCTTTTTCGGTTACTATTACGAGTTCACAAATCAAATTTGTAGTTGAAATTGATCATATGGAAGTTATTCTAACTGGTAAGGAAGGAGATTGCATAATTGGAGGCATTAAAGAAGGAGATGAAATTGAATGTGGAATTAGTCTTTATCCAATGGAAGTTTATCGTGCATTCACATCCAAAAGAGTATGGTTATTCAAGGCATGTGATCCCAATGGTTTGATATTGATCGGTCCTATGGGATTGTCTAATCATATTTCTTCATATTTTCCTGATGATTGCTATGGGGGGAATTGA

Protein sequence

MSYLHRIGVSSLTFSMPKNQPNINLQCRIPFSVTITSSQIKFVVEIDHMEVILTGKEGDCIIGGIKEGDEIECGISLYPMEVYRAFTSKRVWLFKACDPNGLILIGPMGLSNHISSYFPDDCYGGN

Homology

[Close]

BLAST of CcUC02G029870 vs. NCBI nr
Match: KAE8651933.1 (hypothetical protein Csa_006731 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 8.2e-34
Identity = 86/181 (47.51%), Postives = 102/181 (56.35%), Query Frame = 0


Query: 1   MSYLHRIGVSSLTF---SMPKNQPNINLQCRIP--------------------------- 60
           M+YLHR+GVSSL+F   +MP NQ +I L+ RIP                           
Sbjct: 1   MTYLHRMGVSSLSFCMPTMPTNQSSITLKYRIPCQENPFYTKVLPMSIVEEPAEVGDVDY 60

Query: 61  ------------------------FSVTITSSQIKFVVEIDHMEVILTGKEGDCIIGGIK 120
                                     VTITSSQIKFV  +DH E   T +EG CIIGGI+
Sbjct: 61  GSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDHWETSFTTQEGKCIIGGIE 120

Query: 121 EGDEIECGISLYPMEVYRAFTSKRVWLFKACDPNGLILIGPMGLSNHISSYFPDDC-YGG 127
           EG+EI+CGISLYPME Y+AFTSKRVW F +CD NGL+LI PMG+  HISS+FP D   GG
Sbjct: 121 EGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYTHISSFFPQDIPNGG 180

[Close]

BLAST of CcUC02G029870 vs. NCBI nr
Match: XP_031737287.1 (uncharacterized protein LOC116402216 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 8.2e-34
Identity = 86/181 (47.51%), Postives = 102/181 (56.35%), Query Frame = 0


Query: 1   MSYLHRIGVSSLTF---SMPKNQPNINLQCRIP--------------------------- 60
           M+YLHR+GVSSL+F   +MP NQ +I L+ RIP                           
Sbjct: 79  MTYLHRMGVSSLSFCMPTMPTNQSSITLKYRIPCQENPFYTKVLPMSIVEEPAEVGDVDY 138

Query: 61  ------------------------FSVTITSSQIKFVVEIDHMEVILTGKEGDCIIGGIK 120
                                     VTITSSQIKFV  +DH E   T +EG CIIGGI+
Sbjct: 139 GSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDHWETSFTTQEGKCIIGGIE 198

Query: 121 EGDEIECGISLYPMEVYRAFTSKRVWLFKACDPNGLILIGPMGLSNHISSYFPDDC-YGG 127
           EG+EI+CGISLYPME Y+AFTSKRVW F +CD NGL+LI PMG+  HISS+FP D   GG
Sbjct: 199 EGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYTHISSFFPQDIPNGG 258

[Close]

BLAST of CcUC02G029870 vs. NCBI nr
Match: XP_008457793.2 (PREDICTED: uncharacterized protein LOC103497397 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 2.7e-29
Identity = 62/89 (69.66%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 33  VTITSSQIKFVVEIDHMEVILTGKEGDCIIGGIKEGDEIECGISLYPMEVYRAFTSKRVW 92
           VTITSS+IKFV  IDH E   T KEG+CIIGGI+EG EI+CGISLYPM+ Y+AFTSKRVW
Sbjct: 237 VTITSSRIKFVALIDHWETSFTTKEGECIIGGIEEGQEIKCGISLYPMKFYKAFTSKRVW 296

Query: 93  LFKACDPNGLILIGPMGLSNHISSYFPDD 122
            F +CD NGL+LI PMG+  HISS+FP +
Sbjct: 297 FFSSCDTNGLLLIAPMGVYTHISSFFPQE 325

[Close]

BLAST of CcUC02G029870 vs. NCBI nr
Match: XP_031737417.1 (uncharacterized protein LOC116402255 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-27
Identity = 63/95 (66.32%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 33  VTITSSQIKFVVEIDHMEVILTGKEGDCIIGGIKEGDEIECGISLYPMEVYRAFTSKRVW 92
           +TI SSQI FVV+ D  E   T KEG+CIIGGI+EGDEI CGIS YPME Y+ FTSKRVW
Sbjct: 42  ITIRSSQINFVVDHD-WETSFTAKEGECIIGGIEEGDEINCGISFYPMEFYKGFTSKRVW 101

Query: 93  LFKACDPNGLILIGPMGLSNHISSYFPDD-CYGGN 127
            F +CD NGL+LI PMG+  HISS+FP D   GGN
Sbjct: 102 FFSSCDTNGLLLIAPMGVYTHISSFFPQDISIGGN 135

[Close]

BLAST of CcUC02G029870 vs. NCBI nr
Match: XP_022928046.1 (uncharacterized protein LOC111434948 [Cucurbita moschata])

HSP 1 Score: 108.6 bits (270), Expect = 3.9e-20
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 33  VTITSSQIKFVVEIDHMEVILTGKEGDCIIGGIKEGDEIECGISLYPMEVYRAFTSKRVW 92
           +TIT+SQIKF+VE   +EV+LT +  +CIIGG   GDE E  + L P E +  FTS+R+W
Sbjct: 160 LTITNSQIKFLVE--DVEVVLTTQRKECIIGGFAAGDEFESAMCLCPWEFFYNFTSERLW 219

Query: 93  LFKACDPNGLILIGPMGLSNHISSYFPDDCYGGN 127
           LFK+ DP G+ LI PMGL  HISSYFP+D Y  N
Sbjct: 220 LFKSYDPKGMTLIAPMGLYVHISSYFPEDFYVPN 251

[Close]

BLAST of CcUC02G029870 vs. ExPASy TrEMBL
Match: A0A0A0LJU4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287150 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 9.1e-31
Identity = 66/95 (69.47%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 33  VTITSSQIKFVVEIDHMEVILTGKEGDCIIGGIKEGDEIECGISLYPMEVYRAFTSKRVW 92
           VTITSSQIKFV  +DH E   T +EG CIIGGI+EG+EI+CGISLYPME Y+AFTSKRVW
Sbjct: 42  VTITSSQIKFVAPVDHWETSFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVW 101

Query: 93  LFKACDPNGLILIGPMGLSNHISSYFPDDC-YGGN 127
            F +CD NGL+LI PMG+  HISS+FP D   GGN
Sbjct: 102 FFSSCDTNGLLLIAPMGVYTHISSFFPQDIPNGGN 136

[Close]

BLAST of CcUC02G029870 vs. ExPASy TrEMBL
Match: A0A1S3C6G9 (uncharacterized protein LOC103497397 OS=Cucumis melo OX=3656 GN=LOC103497397 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.3e-29
Identity = 62/89 (69.66%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 33  VTITSSQIKFVVEIDHMEVILTGKEGDCIIGGIKEGDEIECGISLYPMEVYRAFTSKRVW 92
           VTITSS+IKFV  IDH E   T KEG+CIIGGI+EG EI+CGISLYPM+ Y+AFTSKRVW
Sbjct: 237 VTITSSRIKFVALIDHWETSFTTKEGECIIGGIEEGQEIKCGISLYPMKFYKAFTSKRVW 296

Query: 93  LFKACDPNGLILIGPMGLSNHISSYFPDD 122
            F +CD NGL+LI PMG+  HISS+FP +
Sbjct: 297 FFSSCDTNGLLLIAPMGVYTHISSFFPQE 325

[Close]

BLAST of CcUC02G029870 vs. ExPASy TrEMBL
Match: A0A0A0LMQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287140 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.2e-27
Identity = 63/95 (66.32%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 33  VTITSSQIKFVVEIDHMEVILTGKEGDCIIGGIKEGDEIECGISLYPMEVYRAFTSKRVW 92
           +TI SSQI FVV+ D  E   T KEG+CIIGGI+EGDEI CGIS YPME Y+ FTSKRVW
Sbjct: 42  ITIRSSQINFVVDHD-WETSFTAKEGECIIGGIEEGDEINCGISFYPMEFYKGFTSKRVW 101

Query: 93  LFKACDPNGLILIGPMGLSNHISSYFPDD-CYGGN 127
            F +CD NGL+LI PMG+  HISS+FP D   GGN
Sbjct: 102 FFSSCDTNGLLLIAPMGVYTHISSFFPQDISIGGN 135

[Close]

BLAST of CcUC02G029870 vs. ExPASy TrEMBL
Match: A0A0A0LQ10 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287180 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.7e-25
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 49  MEVILTGKEGDCIIGGIKEGDEIECGISLYPMEVYRAFTSKRVW-LFKACDPNGLILIGP 108
           MEVILT KEG+CIIGG +EGDEI+CGISLYPME Y+AFTSK VW LF + DPNG++LI P
Sbjct: 1   MEVILTTKEGECIIGGTEEGDEIKCGISLYPMEFYKAFTSKGVWLLFNSYDPNGMLLIAP 60

Query: 109 MGLSNHISSYFPDDCYGG 126
           MGL  HISS+ P D YGG
Sbjct: 61  MGLYTHISSFSPHDIYGG 78

[Close]

BLAST of CcUC02G029870 vs. ExPASy TrEMBL
Match: A0A6J1EJ67 (uncharacterized protein LOC111434948 OS=Cucurbita moschata OX=3662 GN=LOC111434948 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-20
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 33  VTITSSQIKFVVEIDHMEVILTGKEGDCIIGGIKEGDEIECGISLYPMEVYRAFTSKRVW 92
           +TIT+SQIKF+VE   +EV+LT +  +CIIGG   GDE E  + L P E +  FTS+R+W
Sbjct: 160 LTITNSQIKFLVE--DVEVVLTTQRKECIIGGFAAGDEFESAMCLCPWEFFYNFTSERLW 219

Query: 93  LFKACDPNGLILIGPMGLSNHISSYFPDDCYGGN 127
           LFK+ DP G+ LI PMGL  HISSYFP+D Y  N
Sbjct: 220 LFKSYDPKGMTLIAPMGLYVHISSYFPEDFYVPN 251

The following BLAST results are available for this feature:

BLAST of CcUC02G029870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651933.1	8.2e-34	47.51	hypothetical protein Csa_006731 [Cucumis sativus]	[more]
XP_031737287.1	8.2e-34	47.51	uncharacterized protein LOC116402216 [Cucumis sativus]	[more]
XP_008457793.2	2.7e-29	69.66	PREDICTED: uncharacterized protein LOC103497397 [Cucumis melo]	[more]
XP_031737417.1	2.6e-27	66.32	uncharacterized protein LOC116402255 [Cucumis sativus]	[more]
XP_022928046.1	3.9e-20	56.38	uncharacterized protein LOC111434948 [Cucurbita moschata]	[more]

BLAST of CcUC02G029870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G029870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJU4	9.1e-31	69.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287150 PE=4 SV=1	[more]
A0A1S3C6G9	1.3e-29	69.66	uncharacterized protein LOC103497397 OS=Cucumis melo OX=3656 GN=LOC103497397 PE=...	[more]
A0A0A0LMQ7	1.2e-27	66.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287140 PE=4 SV=1	[more]
A0A0A0LQ10	5.7e-25	73.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287180 PE=4 SV=1	[more]
A0A6J1EJ67	1.9e-20	56.38	uncharacterized protein LOC111434948 OS=Cucurbita moschata OX=3662 GN=LOC1114349...	[more]

BLAST of CcUC02G029870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G029870.1	CcUC02G029870.1	mRNA