CcUC02G029860 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G029860
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	C2H2-type domain-containing protein
Location	CicolChr02: 25222598 .. 25223086 (+)
RNA-Seq Expression	CcUC02G029860
Synteny	CcUC02G029860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGAAGCTTCAACAATGGATGACAAATCGGTTCCTTATAATCTTCGACTTCGGAGAGATCACAAAGCTTCTTCTCCAACTGAACATTCCAAAACTCACAAGCAAGACAAAGATTTTCAGGTTTTTTTCTTTTTGTTTTTGTTTCTGTTCATGTTCCCTTAATTATTTATTGTTTTCAAAATTAATAAAGAAAATAATAATATTATTGTTATTATATTTAGGAAAAGGCAATTGAAGAAGTATATGCAGGGCATTTAGTTGTGAATTACCGATGTGAAAATTGCGGATGCTCTTTTGATCTTGAAACCTCTCTTCGCTCACATCATTGCAAATTTTGTATTTTTAATTTTAATATTTATAAATATTTGCAGCAGAATAAAAGTGAGAAAGAGGCAATAATGGAAATTGGAGTGGAGAAAAATTTGGGGGAGAACAAGTCTTTCAGAAGAAGAAGTAGGAAGGGAATACCAACACGGGCTCCTTTCTTT

mRNA sequence

ATTTGAAGCTTCAACAATGGATGACAAATCGGTTCCTTATAATCTTCGACTTCGGAGAGATCACAAAGCTTCTTCTCCAACTGAACATTCCAAAACTCACAAGCAAGACAAAGATTTTCAGGAAAAGGCAATTGAAGAAGTATATGCAGGGCATTTAGTTGTGAATTACCGATGTGAAAATTGCGGATGCTCTTTTGATCTTGAAACCTCTCTTCGCTCACATCATTGCAAATTTTGTATTTTTAATTTTAATATTTATAAATATTTGCAGCAGAATAAAAGTGAGAAAGAGGCAATAATGGAAATTGGAGTGGAGAAAAATTTGGGGGAGAACAAGTCTTTCAGAAGAAGAAGTAGGAAGGGAATACCAACACGGGCTCCTTTCTTT

Coding sequence (CDS)

ATGGATGACAAATCGGTTCCTTATAATCTTCGACTTCGGAGAGATCACAAAGCTTCTTCTCCAACTGAACATTCCAAAACTCACAAGCAAGACAAAGATTTTCAGGAAAAGGCAATTGAAGAAGTATATGCAGGGCATTTAGTTGTGAATTACCGATGTGAAAATTGCGGATGCTCTTTTGATCTTGAAACCTCTCTTCGCTCACATCATTGCAAATTTTGTATTTTTAATTTTAATATTTATAAATATTTGCAGCAGAATAAAAGTGAGAAAGAGGCAATAATGGAAATTGGAGTGGAGAAAAATTTGGGGGAGAACAAGTCTTTCAGAAGAAGAAGTAGGAAGGGAATACCAACACGGGCTCCTTTCTTT

Protein sequence

MDDKSVPYNLRLRRDHKASSPTEHSKTHKQDKDFQEKAIEEVYAGHLVVNYRCENCGCSFDLETSLRSHHCKFCIFNFNIYKYLQQNKSEKEAIMEIGVEKNLGENKSFRRRSRKGIPTRAPFF

Homology

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BLAST of CcUC02G029860 vs. NCBI nr
Match: KAE8651931.1 (hypothetical protein Csa_006531, partial [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 8.1e-34
Identity = 78/122 (63.93%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 1   MDDKSVPYNLRLRRDHKASSPTEHSKTHKQDKDFQEKAI-EEVYAGHLVVNYRCENCGCS 60
           MDDKS+PYNLRLR+DHK+SSPTEHSKTHK D+DFQEKA  +++Y  HL+V+YRCE CGCS
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60

Query: 61  FDLETSLRSHHCKFCIFNFNIYKYLQQNKSEKEAIMEIGVEKNLGENKSFRRRSRKGIPT 120
           FD+E+SL SHHCK              NK+E+EA MEI     LGENKSFR++SRKG+P 
Sbjct: 61  FDIESSLSSHHCK--------------NKNEREA-MEIEGHGILGENKSFRKKSRKGVPR 107

Query: 121 RA 122
           RA
Sbjct: 121 RA 107

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BLAST of CcUC02G029860 vs. NCBI nr
Match: XP_023511836.1 (uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.3 bits (329), Expect = 5.6e-27
Identity = 75/125 (60.00%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 1   MDDKSVPYNLRLRRDHKASSPTEHSKTHKQ-DKDFQEKAIEEVYAGHLVVNYRCENCGCS 60
           MDDKSVPYNLRLR+DHKAS+ TE SK  KQ +++FQEK  EEV +      Y C+ CGCS
Sbjct: 1   MDDKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLS-----LYGCDKCGCS 60

Query: 61  FDLETSLRSHHCKFCIFNFNIYKYLQQNKSEKEAIMEIGVEKNLGENKSFRRRSRKGIPT 120
           FDL+ SLRSHHCK              NKSEKEA ME  V++ LG++KS R+R+RKGIPT
Sbjct: 61  FDLQPSLRSHHCK------------NNNKSEKEA-MENEVDEGLGKDKSLRKRTRKGIPT 107

Query: 121 RAPFF 125
           RAPFF
Sbjct: 121 RAPFF 107

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BLAST of CcUC02G029860 vs. NCBI nr
Match: KAG6571418.1 (hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-26
Identity = 75/124 (60.48%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 1   MDDKSVPYNLRLRRDHKASSPTEHSKTHKQ-DKDFQEKAIEEVYAGHLVVNYRCENCGCS 60
           MDDKSVPYNLRLR+DHKAS+ TE SK  KQ +++FQEK  EEV +      Y C+ CGCS
Sbjct: 1   MDDKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLS-----LYGCDKCGCS 60

Query: 61  FDLETSLRSHHCKFCIFNFNIYKYLQQNKSEKEAIMEIGVEKNLGENKSFRRRSRKGIPT 120
           FDL+ SLRSHHCK              NKSEKEA ME  VE+ LG++KS R+R+RKGIPT
Sbjct: 61  FDLQPSLRSHHCK------------NNNKSEKEA-MENEVEEGLGKDKSLRKRTRKGIPT 106

Query: 121 RAPF 124
           RAPF
Sbjct: 121 RAPF 106

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BLAST of CcUC02G029860 vs. NCBI nr
Match: KAG7011182.1 (hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-26
Identity = 74/124 (59.68%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 1   MDDKSVPYNLRLRRDHKASSPTEHSKTHKQ-DKDFQEKAIEEVYAGHLVVNYRCENCGCS 60
           MD+KSVPYNLRLR+DHKAS+ TE SK  KQ +++FQEK  EEV +      Y C+ CGCS
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLS-----LYGCDKCGCS 60

Query: 61  FDLETSLRSHHCKFCIFNFNIYKYLQQNKSEKEAIMEIGVEKNLGENKSFRRRSRKGIPT 120
           FDL+ SLRSHHCK              NKSEKEA ME  VE+ LG++KS R+R+RKGIPT
Sbjct: 61  FDLQPSLRSHHCK------------NNNKSEKEA-MENEVEEGLGKDKSLRKRTRKGIPT 106

Query: 121 RAPF 124
           RAPF
Sbjct: 121 RAPF 106

[Close]

BLAST of CcUC02G029860 vs. NCBI nr
Match: XP_022928048.1 (uncharacterized protein LOC111434950 [Cucurbita moschata])

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-25
Identity = 73/125 (58.40%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 1   MDDKSVPYNLRLRRDHKASSPTEHSKTHKQ-DKDFQEKAIEEVYAGHLVVNYRCENCGCS 60
           MD+KSVPYNLRLR+DHKAS+ TE SK  KQ +++FQEK  EEV +      Y C+ CGCS
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLS-----LYGCDKCGCS 60

Query: 61  FDLETSLRSHHCKFCIFNFNIYKYLQQNKSEKEAIMEIGVEKNLGENKSFRRRSRKGIPT 120
           FDL+ SLRSHHCK              NKSE+EA  E  VE+ LG++KS R+R+RKGIPT
Sbjct: 61  FDLQPSLRSHHCK------------SNNKSEREA-TENEVEEALGKDKSLRKRTRKGIPT 107

Query: 121 RAPFF 125
           RAPFF
Sbjct: 121 RAPFF 107

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BLAST of CcUC02G029860 vs. ExPASy TrEMBL
Match: A0A0A0LQ06 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G287130 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.9e-36
Identity = 81/125 (64.80%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 1   MDDKSVPYNLRLRRDHKASSPTEHSKTHKQDKDFQEKAI-EEVYAGHLVVNYRCENCGCS 60
           MDDKS+PYNLRLR+DHK+SSPTEHSKTHK D+DFQEKA  +++Y  HL+V+YRCE CGCS
Sbjct: 1   MDDKSLPYNLRLRKDHKSSSPTEHSKTHKHDRDFQEKASDDQIYVSHLIVDYRCEKCGCS 60

Query: 61  FDLETSLRSHHCKFCIFNFNIYKYLQQNKSEKEAIMEIGVEKNLGENKSFRRRSRKGIPT 120
           FD+E+SL SHHCK              NK+E+EA MEI     LGENKSFR++SRKG+P 
Sbjct: 61  FDIESSLSSHHCK--------------NKNEREA-MEIEGHGILGENKSFRKKSRKGVPR 110

Query: 121 RAPFF 125
           RAPFF
Sbjct: 121 RAPFF 110

[Close]

BLAST of CcUC02G029860 vs. ExPASy TrEMBL
Match: A0A6J1EMR9 (uncharacterized protein LOC111434950 OS=Cucurbita moschata OX=3662 GN=LOC111434950 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.7e-26
Identity = 73/125 (58.40%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 1   MDDKSVPYNLRLRRDHKASSPTEHSKTHKQ-DKDFQEKAIEEVYAGHLVVNYRCENCGCS 60
           MD+KSVPYNLRLR+DHKAS+ TE SK  KQ +++FQEK  EEV +      Y C+ CGCS
Sbjct: 1   MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLS-----LYGCDKCGCS 60

Query: 61  FDLETSLRSHHCKFCIFNFNIYKYLQQNKSEKEAIMEIGVEKNLGENKSFRRRSRKGIPT 120
           FDL+ SLRSHHCK              NKSE+EA  E  VE+ LG++KS R+R+RKGIPT
Sbjct: 61  FDLQPSLRSHHCK------------SNNKSEREA-TENEVEEALGKDKSLRKRTRKGIPT 107

Query: 121 RAPFF 125
           RAPFF
Sbjct: 121 RAPFF 107

[Close]

BLAST of CcUC02G029860 vs. ExPASy TrEMBL
Match: A0A6J1D739 (uncharacterized protein LOC111017959 OS=Momordica charantia OX=3673 GN=LOC111017959 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 62/125 (49.60%), Postives = 78/125 (62.40%), Query Frame = 0


Query: 1   MDDKSVPYNLRLRRDHKASSPTEHSK-THKQDKDFQEKAIEEVYAGHLVVNYRCENCGCS 60
           MDDKS+PYNLRLR   KAS+PTE SK   K ++DFQEK  EE+      +  RCE CGC 
Sbjct: 1   MDDKSLPYNLRLR---KASAPTEPSKINQKHERDFQEKGDEEI-----GLEQRCEKCGCR 60

Query: 61  FDLETSLRSHHCKFCIFNFNIYKYLQQNKSEKEAIMEIGVEKNLGENKSFRRRSRKGIPT 120
           F +E SL SHHCK           + +   E + + E+ +++N    KSFR+RSRKGIPT
Sbjct: 61  FGIEISLHSHHCK-------CKNKMSEEGMENQVVPEM-LDQNNNNKKSFRKRSRKGIPT 109

Query: 121 RAPFF 125
           RAP F
Sbjct: 121 RAPLF 109

The following BLAST results are available for this feature:

BLAST of CcUC02G029860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651931.1	8.1e-34	63.93	hypothetical protein Csa_006531, partial [Cucumis sativus]	[more]
XP_023511836.1	5.6e-27	60.00	uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo]	[more]
KAG6571418.1	1.2e-26	60.48	hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011182.1	3.6e-26	59.68	hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022928048.1	1.4e-25	58.40	uncharacterized protein LOC111434950 [Cucurbita moschata]	[more]

BLAST of CcUC02G029860 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G029860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ06	1.9e-36	64.80	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G287130 P...	[more]
A0A6J1EMR9	6.7e-26	58.40	uncharacterized protein LOC111434950 OS=Cucurbita moschata OX=3662 GN=LOC1114349...	[more]
A0A6J1D739	2.1e-19	49.60	uncharacterized protein LOC111017959 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of CcUC02G029860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 51..69 score: 8.745844

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G029860.1	CcUC02G029860.1	mRNA