CcUC02G028280 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G028280
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Transmembrane protein
Location	CicolChr02: 22114061 .. 22114432 (+)
RNA-Seq Expression	CcUC02G028280
Synteny	CcUC02G028280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGGTTTCAACCAAAGAGAAGAGGTCCAGAGTGGAAACAAGGATGGACAGGCCAAACCCTAGGCTCTGTTTCTTCTCCACCACCTCAATTTCTCACCATTTTTGGTATTGTCATTGTCTTGCTTTGGTTTTCTCAGTTCAACACGGGCTATGAAGCTCAAATGAACAAAAATTTTCAGCTGGTTCTTTTCTTGTTGCCCATCTTGGTCATTTTCTTCATGTCTTCATATTCAATTGGTGGACTGATCAACTTCCGACTTCGCCGACCGGCAACCGGGTCAACTCAACGAGGTGCCTCTCCATGGACCATTGCCATTTTGGTCCCTCTCATTCTGATTTTGCTTTATTACCAACCCTCATTCCGTTGA

mRNA sequence

ATGGATTGGTTTCAACCAAAGAGAAGAGGTCCAGAGTGGAAACAAGGATGGACAGGCCAAACCCTAGGCTCTGTTTCTTCTCCACCACCTCAATTTCTCACCATTTTTGGTATTGTCATTGTCTTGCTTTGGTTTTCTCAGTTCAACACGGGCTATGAAGCTCAAATGAACAAAAATTTTCAGCTGGTTCTTTTCTTGTTGCCCATCTTGGTCATTTTCTTCATGTCTTCATATTCAATTGGTGGACTGATCAACTTCCGACTTCGCCGACCGGCAACCGGGTCAACTCAACGAGGTGCCTCTCCATGGACCATTGCCATTTTGGTCCCTCTCATTCTGATTTTGCTTTATTACCAACCCTCATTCCGTTGA

Coding sequence (CDS)

ATGGATTGGTTTCAACCAAAGAGAAGAGGTCCAGAGTGGAAACAAGGATGGACAGGCCAAACCCTAGGCTCTGTTTCTTCTCCACCACCTCAATTTCTCACCATTTTTGGTATTGTCATTGTCTTGCTTTGGTTTTCTCAGTTCAACACGGGCTATGAAGCTCAAATGAACAAAAATTTTCAGCTGGTTCTTTTCTTGTTGCCCATCTTGGTCATTTTCTTCATGTCTTCATATTCAATTGGTGGACTGATCAACTTCCGACTTCGCCGACCGGCAACCGGGTCAACTCAACGAGGTGCCTCTCCATGGACCATTGCCATTTTGGTCCCTCTCATTCTGATTTTGCTTTATTACCAACCCTCATTCCGTTGA

Protein sequence

MDWFQPKRRGPEWKQGWTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNKNFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATGSTQRGASPWTIAILVPLILILLYYQPSFR

Homology

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BLAST of CcUC02G028280 vs. NCBI nr
Match: KAG7010871.1 (hypothetical protein SDJN02_27669, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187.2 bits (474), Expect = 8.5e-44
Identity = 96/126 (76.19%), Postives = 107/126 (84.92%), Query Frame = 0


Query: 1   MDWFQPKRRGPEWKQGWTGQTL-GSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNK- 60
           M+W +PKRRGPEWKQ WTGQTL GSVSSPPPQ LTIFGIVIVLLWFSQ  TGY+ QM++ 
Sbjct: 1   MEWLEPKRRGPEWKQEWTGQTLGGSVSSPPPQLLTIFGIVIVLLWFSQSTTGYDTQMHRS 60

Query: 61  --NFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATGSTQRGASPWTIAILVPLILILL 120
             NFQL+LFLLPILVIFFMSSYS+ GLIN R  R ATGS +RGASP TI ILV LIL+LL
Sbjct: 61  ASNFQLLLFLLPILVIFFMSSYSMCGLINLRSWRSATGSPRRGASPLTITILVSLILVLL 120

Query: 121 YYQPSF 123
           Y++PSF
Sbjct: 121 YFRPSF 126

[Close]

BLAST of CcUC02G028280 vs. NCBI nr
Match: KGN61894.1 (hypothetical protein Csa_005908 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 4.0e-41
Identity = 93/124 (75.00%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 1   MDWFQPKRRGPEWKQG--WTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNK 60
           MD F PKRRGPEWK+G   TGQTL SVS PP Q L IFGIVIVLLWFSQFN G+EAQ+N+
Sbjct: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60

Query: 61  NFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATGSTQRGASPWTIAILVPLILILLYY 120
           +FQL LFLLPI VIFFM SYS   LINF  RR  TG  QRGASPWTIAILV LIL+LLYY
Sbjct: 61  SFQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILVLLYY 120

Query: 121 QPSF 123
           Q SF
Sbjct: 121 QSSF 124

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BLAST of CcUC02G028280 vs. NCBI nr
Match: KAF3434655.1 (hypothetical protein FNV43_RR21740 [Rhamnella rubrinervis])

HSP 1 Score: 156.4 bits (394), Expect = 1.6e-34
Identity = 82/126 (65.08%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 1   MDWFQPKRRGPEWKQGWTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNK-- 60
           M+WF PKRRGPEWKQGWTGQTL S+S+PP   LTIFGIVIVLLWFSQ+ TGY+AQ+ +  
Sbjct: 1   MEWFYPKRRGPEWKQGWTGQTLTSISAPPLHLLTIFGIVIVLLWFSQY-TGYKAQLQQTT 60

Query: 61  -NFQLVLFLLPILVIFFMSSY-SIGGLINFRLRRPATGSTQRGASPWTIAILVPLILILL 120
            NFQL L +LPIL+IFFM+ Y S GG  NF+LRRP     + G SPW +AIL+ L+L+LL
Sbjct: 61  VNFQLFLMVLPILLIFFMALYSSSGGWFNFQLRRP-EAFHRAGGSPWGVAILLVLLLVLL 120

Query: 121 YYQPSF 123
            YQ SF
Sbjct: 121 SYQSSF 124

[Close]

BLAST of CcUC02G028280 vs. NCBI nr
Match: PON83413.1 (Transmembrane protein [Trema orientale])

HSP 1 Score: 147.5 bits (371), Expect = 7.5e-32
Identity = 73/127 (57.48%), Postives = 93/127 (73.23%), Query Frame = 0


Query: 1   MDWFQPKRRGPEWKQGWTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNK-- 60
           M+WF PKRRGP+WKQGWT QT+ S+S+P    L IF IV+VLLW SQ+ TGY+AQ+ +  
Sbjct: 1   MEWFYPKRRGPQWKQGWTSQTVASISAPSFHLLAIFSIVMVLLWLSQY-TGYKAQLQQTA 60

Query: 61  -NFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATGSTQR--GASPWTIAILVPLILIL 120
            NFQL +FLLP+L+I FM+SYS  GL NFR RRP   +  +  G+SPW +A  V L+L+L
Sbjct: 61  VNFQLFMFLLPVLLIVFMASYSSSGLFNFRFRRPRPDTPMQLAGSSPWGVAFFVALLLVL 120

Query: 121 LYYQPSF 123
           L YQ SF
Sbjct: 121 LSYQSSF 126

[Close]

BLAST of CcUC02G028280 vs. NCBI nr
Match: KAE8008693.1 (hypothetical protein FH972_005182 [Carpinus fangiana])

HSP 1 Score: 147.1 bits (370), Expect = 9.8e-32
Identity = 78/126 (61.90%), Postives = 93/126 (73.81%), Query Frame = 0


Query: 1   MDWFQPKRRGPEWKQGWTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQM---N 60
           M+WF  KRRGPEWKQGWTGQTLGS+S+PP   LTIFGIVIVLLW SQ +T Y+AQ+    
Sbjct: 1   MEWFYTKRRGPEWKQGWTGQTLGSISTPPLHLLTIFGIVIVLLWLSQ-STDYKAQLKYTT 60

Query: 61  KNFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATGSTQR-GASPWTIAILVPLILILL 120
            NFQL +FLLPIL+I FM++YS GG  +  L R    S QR G  PW +AILV ++L+LL
Sbjct: 61  VNFQLFIFLLPILLILFMAAYSTGGRFHSPLLRSEYESVQRAGGLPWGMAILVVVLLVLL 120

Query: 121 YYQPSF 123
            YQ SF
Sbjct: 121 SYQSSF 125

[Close]

BLAST of CcUC02G028280 vs. ExPASy TrEMBL
Match: A0A0A0LLH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263890 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.9e-41
Identity = 93/124 (75.00%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 1   MDWFQPKRRGPEWKQG--WTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNK 60
           MD F PKRRGPEWK+G   TGQTL SVS PP Q L IFGIVIVLLWFSQFN G+EAQ+N+
Sbjct: 1   MDCFYPKRRGPEWKRGLTGTGQTLSSVSPPPIQLLIIFGIVIVLLWFSQFNAGHEAQLNR 60

Query: 61  NFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATGSTQRGASPWTIAILVPLILILLYY 120
           +FQL LFLLPI VIFFM SYS   LINF  RR  TG  QRGASPWTIAILV LIL+LLYY
Sbjct: 61  SFQLFLFLLPIFVIFFMYSYSSSRLINFGFRRSPTGLAQRGASPWTIAILVLLILVLLYY 120

Query: 121 QPSF 123
           Q SF
Sbjct: 121 QSSF 124

[Close]

BLAST of CcUC02G028280 vs. ExPASy TrEMBL
Match: A0A2P5ED06 (Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_208280 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.6e-32
Identity = 73/127 (57.48%), Postives = 93/127 (73.23%), Query Frame = 0


Query: 1   MDWFQPKRRGPEWKQGWTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNK-- 60
           M+WF PKRRGP+WKQGWT QT+ S+S+P    L IF IV+VLLW SQ+ TGY+AQ+ +  
Sbjct: 1   MEWFYPKRRGPQWKQGWTSQTVASISAPSFHLLAIFSIVMVLLWLSQY-TGYKAQLQQTA 60

Query: 61  -NFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATGSTQR--GASPWTIAILVPLILIL 120
            NFQL +FLLP+L+I FM+SYS  GL NFR RRP   +  +  G+SPW +A  V L+L+L
Sbjct: 61  VNFQLFMFLLPVLLIVFMASYSSSGLFNFRFRRPRPDTPMQLAGSSPWGVAFFVALLLVL 120

Query: 121 LYYQPSF 123
           L YQ SF
Sbjct: 121 LSYQSSF 126

[Close]

BLAST of CcUC02G028280 vs. ExPASy TrEMBL
Match: A0A5N6QRB9 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_005182 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.7e-32
Identity = 78/126 (61.90%), Postives = 93/126 (73.81%), Query Frame = 0


Query: 1   MDWFQPKRRGPEWKQGWTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQM---N 60
           M+WF  KRRGPEWKQGWTGQTLGS+S+PP   LTIFGIVIVLLW SQ +T Y+AQ+    
Sbjct: 1   MEWFYTKRRGPEWKQGWTGQTLGSISTPPLHLLTIFGIVIVLLWLSQ-STDYKAQLKYTT 60

Query: 61  KNFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATGSTQR-GASPWTIAILVPLILILL 120
            NFQL +FLLPIL+I FM++YS GG  +  L R    S QR G  PW +AILV ++L+LL
Sbjct: 61  VNFQLFIFLLPILLILFMAAYSTGGRFHSPLLRSEYESVQRAGGLPWGMAILVVVLLVLL 120

Query: 121 YYQPSF 123
            YQ SF
Sbjct: 121 SYQSSF 125

[Close]

BLAST of CcUC02G028280 vs. ExPASy TrEMBL
Match: B9STD1 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0660950 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 8.1e-32
Identity = 74/130 (56.92%), Postives = 94/130 (72.31%), Query Frame = 0


Query: 1   MDWFQPKRRGPEWKQGWTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNK-- 60
           M+WF P+RRGPEWKQGWTGQTLGS+S PPP  L IFGIVI+LLW SQ+ T Y+AQ++   
Sbjct: 1   MEWFYPRRRGPEWKQGWTGQTLGSISIPPPPLLVIFGIVILLLWLSQY-TDYKAQLHHSA 60

Query: 61  -NFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPATG-----STQRGASPWTIAILVPLI 120
            NFQL LFLLP+L+I  ++SYS   +  FRLR+P +G     S +  + PW IA  V ++
Sbjct: 61  INFQLFLFLLPVLLILLIASYSTNWMPYFRLRQPRSGRESVRSAEGSSQPWGIAAFVAVL 120

Query: 121 LILLYYQPSF 123
           L+LL YQ SF
Sbjct: 121 LVLLSYQSSF 129

[Close]

BLAST of CcUC02G028280 vs. ExPASy TrEMBL
Match: A0A2P5C233 (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_190300 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.1e-31
Identity = 74/127 (58.27%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 1   MDWFQPKRRGPEWKQGWTGQTLGSVSSPPPQFLTIFGIVIVLLWFSQFNTGYEAQMNK-- 60
           M WF PKRRGP+WKQGWT QT+ SVS+P    L IF IV+VLLW SQ+ TG++AQ+ +  
Sbjct: 1   MGWFYPKRRGPQWKQGWTSQTVASVSAPSFHLLAIFSIVMVLLWLSQY-TGHKAQLQQTA 60

Query: 61  -NFQLVLFLLPILVIFFMSSYSIGGLINFRLRRPA--TGSTQRGASPWTIAILVPLILIL 120
            NFQL +FLLP+L+I FM+SYS  GL NFR RRP   T     G+SPW +A+ V L+L+L
Sbjct: 61  VNFQLFVFLLPVLLIVFMASYSSCGLFNFRFRRPRPDTPMQPAGSSPWGVAVFVALLLVL 120

Query: 121 LYYQPSF 123
           L YQ SF
Sbjct: 121 LSYQSSF 126

[Close]

BLAST of CcUC02G028280 vs. TAIR 10
Match: AT5G19875.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 8.3e-05
Identity = 32/106 (30.19%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 22  LGSVSSPPPQFLTIFGIVIVLL---WFSQFNTGYEAQMNKNFQLVLFLLPILVIFFMSSY 81
           L  +S P P    +F +V  +L   W+  F +  E  ++ + +LV    P+ ++  +  +
Sbjct: 12  LDYLSLPNPHLCFLFIVVFFVLSFTWYLNFESIIEDTLD-HLKLVFIFTPLFLLLLVHFF 71

Query: 82  SIGGLINFRLRRPATGSTQR-GASPWTIAILVPLILILLYYQPSFR 124
           S GGL +F +  P   S  R G+SPW +A ++ LIL ++ YQ  F+
Sbjct: 72  S-GGL-SFYVPWPEQDSIHRAGSSPWGVAAVLVLILFMVSYQSDFQ 114

The following BLAST results are available for this feature:

BLAST of CcUC02G028280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010871.1	8.5e-44	76.19	hypothetical protein SDJN02_27669, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN61894.1	4.0e-41	75.00	hypothetical protein Csa_005908 [Cucumis sativus]	[more]
KAF3434655.1	1.6e-34	65.08	hypothetical protein FNV43_RR21740 [Rhamnella rubrinervis]	[more]
PON83413.1	7.5e-32	57.48	Transmembrane protein [Trema orientale]	[more]
KAE8008693.1	9.8e-32	61.90	hypothetical protein FH972_005182 [Carpinus fangiana]	[more]

BLAST of CcUC02G028280 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G028280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLH8	1.9e-41	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263890 PE=4 SV=1	[more]
A0A2P5ED06	3.6e-32	57.48	Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_208280 PE=4 SV=1	[more]
A0A5N6QRB9	4.7e-32	61.90	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_005182 PE=4 SV=1	[more]
B9STD1	8.1e-32	56.92	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0660950 PE=4 SV=1	[more]
A0A2P5C233	3.1e-31	58.27	Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_190300 PE=4...	[more]

BLAST of CcUC02G028280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19875.1	8.3e-05	30.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306:SF21	EXPRESSED PROTEIN	coord: 1..123
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G028280.1	CcUC02G028280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016853	isomerase activity