CcUC02G028150 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G028150
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Protein Ycf2
Location	CicolChr02: 21427129 .. 21427363 (+)
RNA-Seq Expression	CcUC02G028150
Synteny	CcUC02G028150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGTTTATCAAGAATATGCAAGAAAAGCACTTCAGATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCTGTTCTAATACTCCATTCGAGAGTTATTAATATTTATCAAATTTGTTCCTACCTAAAGGAACACTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGATGGCTTTCCCTAGATGAAATGAAAATTGGATTC

mRNA sequence

ATGTTGAATATGCAAGAAAAGCACTTCAGATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCTGTTCTAATACTCCATTCGAGAGAACACTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGATGGCTTTCCCTAGATGAAATGAAAATTGGATTC

Coding sequence (CDS)

ATGTTGAATATGCAAGAAAAGCACTTCAGATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCTGTTCTAATACTCCATTCGAGAGAACACTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAGATGGCTTTCCCTAGATGAAATGAAAATTGGATTC

Protein sequence

MLNMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFERTLLDQMTKTLLRKRWLSLDEMKIGF

Homology

[Close]

BLAST of CcUC02G028150 vs. NCBI nr
Match: YP_009751528.1 (Ycf2 protein [Thladiantha dubia] >YP_009751546.1 Ycf2 protein [Thladiantha dubia] >QIT04009.1 Ycf2 protein [Thladiantha dubia] >QIT04027.1 Ycf2 protein [Thladiantha dubia])

HSP 1 Score: 103.2 bits (256), Expect = 8.3e-19
Identity = 55/73 (75.34%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFE------------RTLLDQMTKTLLR 62
            N QEKHF LLIHRQRWLRTNSSLSNGFF SNTPFE             TLLDQMTKTLLR
Sbjct: 2207 NTQEKHFGLLIHRQRWLRTNSSLSNGFFRSNTPFESYQYLSNLFLSNETLLDQMTKTLLR 2266

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2267 KRWLFPDEMKIGF 2279

[Close]

BLAST of CcUC02G028150 vs. NCBI nr
Match: YP_009262354.1 (hypothetical chloroplast RF2 [Spondias tuberosa] >ANI86805.1 hypothetical chloroplast RF2 [Spondias tuberosa])

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 54/73 (73.97%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLR 62
            N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP+E             TLLDQMTKTLLR
Sbjct: 2227 NTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPYESYQYLSNLFLSNGTLLDQMTKTLLR 2286

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2287 KRWLFPDEMKIGF 2299

[Close]

BLAST of CcUC02G028150 vs. NCBI nr
Match: YP_009262268.1 (hypothetical chloroplast RF2 [Spondias bahiensis] >ANI86719.1 hypothetical chloroplast RF2 [Spondias bahiensis])

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 54/73 (73.97%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLR 62
            N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP+E             TLLDQMTKTLLR
Sbjct: 2227 NTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPYESYQYLSNLFLSNGTLLDQMTKTLLR 2286

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2287 KRWLFPDEMKIGF 2299

[Close]

BLAST of CcUC02G028150 vs. NCBI nr
Match: YP_009262247.1 (hypothetical chloroplast RF2 [Spondias bahiensis] >ANI86720.1 hypothetical chloroplast RF2 [Spondias bahiensis])

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 54/73 (73.97%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLR 62
            N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP+E             TLLDQMTKTLLR
Sbjct: 2215 NTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPYESYQYLSNLFLSNGTLLDQMTKTLLR 2274

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2275 KRWLFPDEMKIGF 2287

[Close]

BLAST of CcUC02G028150 vs. NCBI nr
Match: YP_009431516.1 (hypothetical chloroplast RF2 [Spondias mombin] >YP_009431534.1 hypothetical chloroplast RF2 [Spondias mombin] >ASY95753.1 hypothetical chloroplast RF2 [Spondias mombin] >ASY95754.1 hypothetical chloroplast RF2 [Spondias mombin])

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 54/73 (73.97%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLR 62
            N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP+E             TLLDQMTKTLLR
Sbjct: 2230 NTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPYESYQYLSNLFLSNGTLLDQMTKTLLR 2289

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2290 KRWLFPDEMKIGF 2302

[Close]

BLAST of CcUC02G028150 vs. ExPASy Swiss-Prot
Match: B1A978 (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 7.1e-21
Identity = 54/73 (73.97%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLR 62
            N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP E             TLLDQMTKTLLR
Sbjct: 2225 NTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLR 2284

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2285 KRWLFPDEMKIGF 2297

[Close]

BLAST of CcUC02G028150 vs. ExPASy Swiss-Prot
Match: Q09MB4 (Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 7.1e-21
Identity = 54/73 (73.97%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLR 62
            N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP E             TLLDQMTKTLLR
Sbjct: 2209 NTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLR 2268

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2269 KRWLFPDEMKIGF 2281

[Close]

BLAST of CcUC02G028150 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.5e-20
Identity = 53/73 (72.60%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLR 62
            N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP E              LLDQMTKTLLR
Sbjct: 2207 NTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGRLLDQMTKTLLR 2266

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2267 KRWLFPDEMKIGF 2279

[Close]

BLAST of CcUC02G028150 vs. ExPASy Swiss-Prot
Match: Q0ZIV6 (Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.0e-19
Identity = 52/73 (71.23%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFE------------RTLLDQMTKTLLR 62
            N QEKHF LLIHRQRWLRTNSSLSNG F SNTP E              LLDQMTKTLLR
Sbjct: 2227 NTQEKHFELLIHRQRWLRTNSSLSNGSFRSNTPSESYQYLSNLFLSNARLLDQMTKTLLR 2286

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2287 KRWLFPDEMKIGF 2299

[Close]

BLAST of CcUC02G028150 vs. ExPASy Swiss-Prot
Match: A6MM80 (Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 8.6e-19
Identity = 52/73 (71.23%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLR 62
            N QEKHF LLIHRQRWLRTNSSLSNG F SNT  E             TLLDQMTKTLLR
Sbjct: 2208 NTQEKHFELLIHRQRWLRTNSSLSNGSFRSNTLSESYQYLSNLFLSNGTLLDQMTKTLLR 2267

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2268 KRWLFPDEMKIGF 2280

[Close]

BLAST of CcUC02G028150 vs. ExPASy TrEMBL
Match: A0A6H0ER44 (Protein Ycf2 OS=Thladiantha dubia OX=210344 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.0e-19
Identity = 55/73 (75.34%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFE------------RTLLDQMTKTLLR 62
            N QEKHF LLIHRQRWLRTNSSLSNGFF SNTPFE             TLLDQMTKTLLR
Sbjct: 2207 NTQEKHFGLLIHRQRWLRTNSSLSNGFFRSNTPFESYQYLSNLFLSNETLLDQMTKTLLR 2266

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2267 KRWLFPDEMKIGF 2279

[Close]

BLAST of CcUC02G028150 vs. ExPASy TrEMBL
Match: A0A249RWP1 (Protein Ycf2 OS=Spondias mombin OX=80338 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.9e-19
Identity = 54/73 (73.97%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLR 62
            N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP+E             TLLDQMTKTLLR
Sbjct: 2230 NTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPYESYQYLSNLFLSNGTLLDQMTKTLLR 2289

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2290 KRWLFPDEMKIGF 2302

[Close]

BLAST of CcUC02G028150 vs. ExPASy TrEMBL
Match: A0A191TDN4 (Protein Ycf2 OS=Spondias bahiensis OX=1577648 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.9e-19
Identity = 54/73 (73.97%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLR 62
            N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP+E             TLLDQMTKTLLR
Sbjct: 2227 NTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPYESYQYLSNLFLSNGTLLDQMTKTLLR 2286

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2287 KRWLFPDEMKIGF 2299

[Close]

BLAST of CcUC02G028150 vs. ExPASy TrEMBL
Match: A0A191TDM6 (Protein Ycf2 OS=Spondias bahiensis OX=1577648 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.9e-19
Identity = 54/73 (73.97%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLR 62
            N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP+E             TLLDQMTKTLLR
Sbjct: 2215 NTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPYESYQYLSNLFLSNGTLLDQMTKTLLR 2274

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2275 KRWLFPDEMKIGF 2287

[Close]

BLAST of CcUC02G028150 vs. ExPASy TrEMBL
Match: A0A191TDW0 (Protein Ycf2 OS=Spondias tuberosa OX=991123 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.9e-19
Identity = 54/73 (73.97%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLR 62
            N QEKHF LLIHRQRWLRTNSSLSNGFF SNTP+E             TLLDQMTKTLLR
Sbjct: 2227 NTQEKHFELLIHRQRWLRTNSSLSNGFFRSNTPYESYQYLSNLFLSNGTLLDQMTKTLLR 2286

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2287 KRWLFPDEMKIGF 2299

[Close]

BLAST of CcUC02G028150 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 91.7 bits (226), Expect = 2.3e-19
Identity = 50/73 (68.49%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLR 62
            N QEKHF LLI RQRWLRTNSSLSNGFF SNT  E             TLLD+MTKTLL+
Sbjct: 2221 NTQEKHFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGTLLDRMTKTLLK 2280

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2281 KRWLFSDEMKIGF 2293

[Close]

BLAST of CcUC02G028150 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 91.7 bits (226), Expect = 2.3e-19
Identity = 50/73 (68.49%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 3    NMQEKHFRLLIHRQRWLRTNSSLSNGFFCSNTPFER------------TLLDQMTKTLLR 62
            N QEKHF LLI RQRWLRTNSSLSNGFF SNT  E             TLLD+MTKTLL+
Sbjct: 2221 NTQEKHFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGTLLDRMTKTLLK 2280

Query: 63   KRWLSLDEMKIGF 64
            KRWL  DEMKIGF
Sbjct: 2281 KRWLFSDEMKIGF 2293

The following BLAST results are available for this feature:

BLAST of CcUC02G028150 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009751528.1	8.3e-19	75.34	Ycf2 protein [Thladiantha dubia] >YP_009751546.1 Ycf2 protein [Thladiantha dubia...	[more]
YP_009262354.1	1.4e-18	73.97	hypothetical chloroplast RF2 [Spondias tuberosa] >ANI86805.1 hypothetical chloro...	[more]
YP_009262268.1	1.4e-18	73.97	hypothetical chloroplast RF2 [Spondias bahiensis] >ANI86719.1 hypothetical chlor...	[more]
YP_009262247.1	1.4e-18	73.97	hypothetical chloroplast RF2 [Spondias bahiensis] >ANI86720.1 hypothetical chlor...	[more]
YP_009431516.1	1.4e-18	73.97	hypothetical chloroplast RF2 [Spondias mombin] >YP_009431534.1 hypothetical chlo...	[more]

BLAST of CcUC02G028150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1A978	7.1e-21	73.97	Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1	[more]
Q09MB4	7.1e-21	73.97	Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1	[more]
Q49KT6	3.5e-20	72.60	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]
Q0ZIV6	3.0e-19	71.23	Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1	[more]
A6MM80	8.6e-19	71.23	Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1	[more]

BLAST of CcUC02G028150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0ER44	4.0e-19	75.34	Protein Ycf2 OS=Thladiantha dubia OX=210344 GN=ycf2 PE=3 SV=1	[more]
A0A249RWP1	6.9e-19	73.97	Protein Ycf2 OS=Spondias mombin OX=80338 GN=ycf2 PE=3 SV=1	[more]
A0A191TDN4	6.9e-19	73.97	Protein Ycf2 OS=Spondias bahiensis OX=1577648 GN=ycf2 PE=3 SV=1	[more]
A0A191TDM6	6.9e-19	73.97	Protein Ycf2 OS=Spondias bahiensis OX=1577648 GN=ycf2 PE=3 SV=1	[more]
A0A191TDW0	6.9e-19	73.97	Protein Ycf2 OS=Spondias tuberosa OX=991123 GN=ycf2 PE=3 SV=1	[more]

BLAST of CcUC02G028150 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	2.3e-19	68.49	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	2.3e-19	68.49	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PANTHER	PTHR33078:SF22	PROTEIN YCF2	coord: 3..63
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 3..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G028150.1	CcUC02G028150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
molecular_function	GO:0000166	nucleotide binding