CcUC02G028080 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G028080
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Actin cytoskeleton-regulatory complex protein
Location	CicolChr02: 21399028 .. 21401182 (+)
RNA-Seq Expression	CcUC02G028080
Synteny	CcUC02G028080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTGTGGTTCGACTTGGTTTGATGTGTATGCTTCTTGCTGGGATGTTGTTGATTCAACTCACGGCTGCGAATGTCGCGGAGGTGCCAACAGTAGCCACGGCGATGCCGTTCTTCGGGGCTAACTTTGGAAAGGAGGAGGAGATTCGGCAGCCGGGAGTGGCTGAAGGTCCTACAATCAGACGGCTGGGAAAGCATCATTTTCACACCTCCATCCCCGGCGATGGGGTGCTCATCGGCGGCCTTGCTACTGCTGTTTTTGCTGTTGTGTTTTGCTACATAAGGGTCACCACAAAGCCTAAACATGTCAACTAATTAAACTATTTTAGTTTTAGCATGATTGAGAGTGTTTACCATATTAAAAAATATTCTAAAACATAGTTTCTATGATTAAAGTGATTTTTCGCATAATTAAAAGTCATTTTAACTATTTTTAAATTACTCTAAACTATATCTAAAACACTATCTTTGTATTTGTATTTGTCTCAAAGCTATGCTCGTTTTTCATTTCCTCCATCTAAAATTGATTCATAGTTAAAAATCCACAAACAATTCAACAGGTTGATTATTTTCTTGATGCAAGATTGTCATTCTTTATTTTGTATCATTCTATACAAAAAATAAACCCCTGCTAAAGAAAATAGACACAAAAAGTTTGAGTTTTGTTTCAAAATGAGTTCTTGTAAAAGTTGATTACTCTCCCTTGTAAAAAGGTATATTCATACCTCATTTTCATGCTTAATACCGACTTTGACTCTTTAACCAAGTTACAAAATACCTTAAAACCAATTCTTATGAATTATGTGCAATATTACATGATAAAGTTTAGGACTGTTATTAAATATAGCAAATCAGTTAAACTATTTACAAATATAAAACTTTTTTATTGTCTATCAGTTATAAACCGCAATAGACTCCTATTGCTGATAAACATCCAAAATTTTCTATATTTGTAAATATTTTGATTTTTTTTTTATTTATAATAATTATTTAAGATTCATGTTACCAACACTATTTCTTTTAAATCATACTTGAATTCAGTCCAAATTTTAATTTCAAAACAAAGAAAAAAAAAGTGTAAAATAATTAAATTGAAACATCAGATTAGATATAAAACTAAAATTGAAAAATCAGTCACATTTTGTTAGATTTTTGTAGGACCATAATATCATGTGCTCTTCACTACAGCCTCTAGGACGTTAATGTGTTATTATCATAATTTGGCCCAAATCATTAATATCTTTGATTCATTTAAATCAATTATAAACCATGTAGGGCTTGTATGTGAACTTTGTAGGGAAATTACAAATAAGTTTAAATATTAAAGAAATAACCATTAAAAACATATAAATCATAAAATACATTAATGTTCAATAGTTATTAAAAATCACAAATAATATTCTAGTATAATAAGTTAAAAAACACTTTTCCTCGTATAAAAAGTTATAGGAGTAATAATTTAGTATACTTTTAATTTGTATCGATTTTGTCTCGAACTTTAGTGACTTTAGTCACCAGTGTGCGTAACCATTTTTAGTCTAATATGCAACGATTTATTCTTATTGTATAATTATGGTTAAGATTTATTAGAATTTCTTACCTAGGTAAAATTAATAAAACAATTAGGGACCAATACGTCTATAAGTTTTATAAAATTTAAAATCAATAAATGATAAAAAAAATTGATATTTAATTTTGATGGAATTTTGTAAGAAATAGACAAAATTGTTATAAATTTGAAAGTATATAGACTAAATACTTAATAAATCAAAATTTAGGGATTAAAATTTAAGTCCATTAAAATTAGGGACCAAAAGTGAATTGTAGTCTCTTATTTATTTATTTTTTTTAATCACATTTTGTATACAAATGACTAAATTTTAGGTCCATCAAAATTAGGGACCAAAAGTTAACTATTTAATTCACTTACATTTTTTTTTTTTCCTTTTTAAATTATGAGTGAATTTGATGTTGACAAAATAAGCTAAAAATAAAGAAAAGAATAAGATAAGATAAGATTCATCCTTGTTTGGGATTTGAAAAAACTCATATTTCTTCTCCATTATAGAGTCGAGATCCATGCGTAGACGACCGCGAACAGTGGAGAACTCACCAACAGCTGGGCATGACCTTGCGGTTGCCAGACAACTAG

mRNA sequence

ATGGCAGCTGTGGTTCGACTTGGTTTGATGTGTATGCTTCTTGCTGGGATGTTGTTGATTCAACTCACGGCTGCGAATGTCGCGGAGGTGCCAACAGTAGCCACGGCGATGCCGTTCTTCGGGGCTAACTTTGGAAAGGAGGAGGAGATTCGGCAGCCGGGAGTGGCTGAAGGTCCTACAATCAGACGGCTGGGAAAGCATCATTTTCACACCTCCATCCCCGGCGATGGGGTGCTCATCGGCGGCCTTGCTACTGCTGTTTTTGCTGTTGTGTTTTGCTACATAAGGAGTCGAGATCCATGCGTAGACGACCGCGAACAGTGGAGAACTCACCAACAGCTGGGCATGACCTTGCGGTTGCCAGACAACTAG

Coding sequence (CDS)

ATGGCAGCTGTGGTTCGACTTGGTTTGATGTGTATGCTTCTTGCTGGGATGTTGTTGATTCAACTCACGGCTGCGAATGTCGCGGAGGTGCCAACAGTAGCCACGGCGATGCCGTTCTTCGGGGCTAACTTTGGAAAGGAGGAGGAGATTCGGCAGCCGGGAGTGGCTGAAGGTCCTACAATCAGACGGCTGGGAAAGCATCATTTTCACACCTCCATCCCCGGCGATGGGGTGCTCATCGGCGGCCTTGCTACTGCTGTTTTTGCTGTTGTGTTTTGCTACATAAGGAGTCGAGATCCATGCGTAGACGACCGCGAACAGTGGAGAACTCACCAACAGCTGGGCATGACCTTGCGGTTGCCAGACAACTAG

Protein sequence

MAAVVRLGLMCMLLAGMLLIQLTAANVAEVPTVATAMPFFGANFGKEEEIRQPGVAEGPTIRRLGKHHFHTSIPGDGVLIGGLATAVFAVVFCYIRSRDPCVDDREQWRTHQQLGMTLRLPDN

Homology

[Close]

BLAST of CcUC02G028080 vs. NCBI nr
Match: XP_023532519.1 (uncharacterized protein LOC111794654 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.3 bits (334), Expect = 1.5e-27
Identity = 70/95 (73.68%), Postives = 77/95 (81.05%), Query Frame = 0


Query: 3   AVVRLGLMCMLLAGMLLIQLTAANVAEVPTVATAMPFFGANFGKEEEI-RQPGVAEGPTI 62
           AVVR GL+C++L GM L QLTAA+ AE PTVATAMPFFGA  G E E+  Q GVA GP I
Sbjct: 15  AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGAEIGMEMEMENQQGVAAGPEI 74

Query: 63  RRLGKHHFHTSIPGDGVLIGGLATAVFAVVFCYIR 97
           RRLGKHH HTS+ G GVL+GGLATAVFAVVFCYIR
Sbjct: 75  RRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIR 109

[Close]

BLAST of CcUC02G028080 vs. NCBI nr
Match: XP_022947872.1 (uncharacterized protein LOC111451632 [Cucurbita moschata] >KAG6604835.1 hypothetical protein SDJN03_02152, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 71/95 (74.74%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 3  AVVRLGLMCMLLAGMLLIQLTAANVAEVPTVATAMPFFGANFGKEEEI-RQPGVAEGPTI 62
          AVVR GL+C++L GM L QLTAA+ AE PTVATAMPFFG   GKE E+  QPGVA GP I
Sbjct: 2  AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFG-EIGKEVEMENQPGVAAGPEI 61

Query: 63 RRLGKHHFHTSIPGDGVLIGGLATAVFAVVFCYIR 97
          RRLGKHH HTS+ G GVL+GGLATAVFAVVFCYIR
Sbjct: 62 RRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIR 95

[Close]

BLAST of CcUC02G028080 vs. NCBI nr
Match: KAG7034949.1 (hypothetical protein SDJN02_01742 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 71/95 (74.74%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 3   AVVRLGLMCMLLAGMLLIQLTAANVAEVPTVATAMPFFGANFGKEEEI-RQPGVAEGPTI 62
           AVVR GL+C++L GM L QLTAA+ AE PTVATAMPFFG   GKE E+  QPGVA GP I
Sbjct: 47  AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFG-EIGKEVEMENQPGVAAGPEI 106

Query: 63  RRLGKHHFHTSIPGDGVLIGGLATAVFAVVFCYIR 97
           RRLGKHH HTS+ G GVL+GGLATAVFAVVFCYIR
Sbjct: 107 RRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIR 140

[Close]

BLAST of CcUC02G028080 vs. NCBI nr
Match: KGN46704.1 (hypothetical protein Csa_020980 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 9.5e-27
Identity = 69/96 (71.88%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 1  MAAVVRLGLMCMLLAGMLLIQLTAANVAEVPTVATAMPFFGANFGKEEEIRQPGVAEGPT 60
          MAAVVRL LM ++LAGM  IQLTAANV E P V TA+ FFG+  GKEE ++ P VAEGP 
Sbjct: 1  MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTAL-FFGSKIGKEEAVQGPVVAEGPA 60

Query: 61 IRRLGKHHFHTSIPGDGVLIGGLATAVFAVVFCYIR 97
          IRRLGKHHFHTS+ G  VLIG LATAVFA+VFCYIR
Sbjct: 61 IRRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIR 95

[Close]

BLAST of CcUC02G028080 vs. NCBI nr
Match: KAG6572323.1 (hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-12
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 4  VVRLGLMCMLLAGMLLIQLTAANVAEVPTVATAMPFFGANFGKEEEIRQPGVAEGPTIRR 63
          + ++ L+C++LA +LLIQ  A+      +  +A P       + + +  PG+AE P IRR
Sbjct: 1  MAKISLLCLILAQILLIQAMASTATTTTSHVSAAP----EPSETDNVEGPGLAEAPEIRR 60

Query: 64 LGKHHFHTSIPGDGVLIGGLATAVFAVVFCYIR 97
          LGKHH   S+ G GV+IGGL TAVFA VFCYIR
Sbjct: 61 LGKHHVDKSVAGGGVIIGGLVTAVFAAVFCYIR 89

[Close]

BLAST of CcUC02G028080 vs. ExPASy TrEMBL
Match: A0A6J1G7L7 (uncharacterized protein LOC111451632 OS=Cucurbita moschata OX=3662 GN=LOC111451632 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.2e-27
Identity = 71/95 (74.74%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 3  AVVRLGLMCMLLAGMLLIQLTAANVAEVPTVATAMPFFGANFGKEEEI-RQPGVAEGPTI 62
          AVVR GL+C++L GM L QLTAA+ AE PTVATAMPFFG   GKE E+  QPGVA GP I
Sbjct: 2  AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFG-EIGKEVEMENQPGVAAGPEI 61

Query: 63 RRLGKHHFHTSIPGDGVLIGGLATAVFAVVFCYIR 97
          RRLGKHH HTS+ G GVL+GGLATAVFAVVFCYIR
Sbjct: 62 RRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIR 95

[Close]

BLAST of CcUC02G028080 vs. ExPASy TrEMBL
Match: A0A0A0KCY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124190 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.6e-27
Identity = 69/96 (71.88%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 1  MAAVVRLGLMCMLLAGMLLIQLTAANVAEVPTVATAMPFFGANFGKEEEIRQPGVAEGPT 60
          MAAVVRL LM ++LAGM  IQLTAANV E P V TA+ FFG+  GKEE ++ P VAEGP 
Sbjct: 1  MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTAL-FFGSKIGKEEAVQGPVVAEGPA 60

Query: 61 IRRLGKHHFHTSIPGDGVLIGGLATAVFAVVFCYIR 97
          IRRLGKHHFHTS+ G  VLIG LATAVFA+VFCYIR
Sbjct: 61 IRRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIR 95

[Close]

BLAST of CcUC02G028080 vs. ExPASy TrEMBL
Match: A5BAN6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044272 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-09
Identity = 44/91 (48.35%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 6  RLGLMCMLLAGMLLIQLTAANVAEVPTVATAMPFFGANFGKEEEIRQPGVAEGPTIRRLG 65
          RL L+C+LLA +L++Q  A      P  +        + G   E  +  VAE P  RRLG
Sbjct: 3  RLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLE--VAEAPANRRLG 62

Query: 66 KHHFHTSIPGDGVLIGGLATAVFAVVFCYIR 97
          KHH   SI G GV+IGGLATA+FA VFCYIR
Sbjct: 63 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIR 91

[Close]

BLAST of CcUC02G028080 vs. ExPASy TrEMBL
Match: A0A0A0K3N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-09
Identity = 42/89 (47.19%), Postives = 53/89 (59.55%), Query Frame = 0


Query: 9  LMCMLLAGMLLIQLTAANVAEVPTVATAMPFFGANFGKEEEIRQPG-VAEGPTIRRLGKH 68
          L C+++  + LIQ    ++A      T +P   A    E+  R+   VAE P IRRLGKH
Sbjct: 7  LFCLIVGEIFLIQAITTSIA----TTTELPLSVAPESSEKGTREGSEVAEAPEIRRLGKH 66

Query: 69 HFHTSIPGDGVLIGGLATAVFAVVFCYIR 97
          H   S+ G GV+IGGL TAVFA VFCYIR
Sbjct: 67 HGDKSMAGGGVIIGGLVTAVFAAVFCYIR 91

[Close]

BLAST of CcUC02G028080 vs. ExPASy TrEMBL
Match: A0A2N9IXN3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-09
Identity = 47/116 (40.52%), Postives = 58/116 (50.00%), Query Frame = 0


Query: 6   RLGLMCMLLAGMLLIQLTA-------------------------ANVAEVPTVATAMPFF 65
           RLGL C++LA +L++Q  A                         A VA+ P  + A    
Sbjct: 3   RLGLFCLILAEILVVQAMAEKSEGSELNPFGLKAQNKNGALGVVARVADQPVSSIA---- 62

Query: 66  GANFGKEEEIRQPGVAEGPTIRRLGKHHFHTSIPGDGVLIGGLATAVFAVVFCYIR 97
                  E      VAE P IRR+GKHH   S+ G GV+IGGLATA+FAVVFCYIR
Sbjct: 63  ----ESPESKEYSDVAEAPVIRRMGKHHSDKSLAGGGVIIGGLATAIFAVVFCYIR 110

[Close]

BLAST of CcUC02G028080 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 36/103 (34.95%), Postives = 49/103 (47.57%), Query Frame = 0


Query: 9   LMCMLLAGMLLIQLTAANVAEVPTVATAMPFFGANFGKEEEIRQPGVAEGPTIRRLGKHH 68
           ++C LL   +     A++ AE P    A    G +    EE   P V+      R G HH
Sbjct: 7   VLCFLLT-YVFSMAAASSEAEPP----ATRKLGRHEWPGEEAEAPEVSHLEETVRRGHHH 66

Query: 69  --FHTSIPGDGVLIGGLATAVFAVVFCYIRS---RDPCVDDRE 107
                S+ G GV++GGLAT    VVFCYIR+     P  D++E
Sbjct: 67  STVERSVAGGGVILGGLATTFLVVVFCYIRATRKHKPNYDEKE 104

The following BLAST results are available for this feature:

BLAST of CcUC02G028080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532519.1	1.5e-27	73.68	uncharacterized protein LOC111794654 [Cucurbita pepo subsp. pepo]	[more]
XP_022947872.1	2.5e-27	74.74	uncharacterized protein LOC111451632 [Cucurbita moschata] >KAG6604835.1 hypothet...	[more]
KAG7034949.1	2.5e-27	74.74	hypothetical protein SDJN02_01742 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KGN46704.1	9.5e-27	71.88	hypothetical protein Csa_020980 [Cucumis sativus]	[more]
KAG6572323.1	1.7e-12	46.24	hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CcUC02G028080 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G028080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7L7	1.2e-27	74.74	uncharacterized protein LOC111451632 OS=Cucurbita moschata OX=3662 GN=LOC1114516...	[more]
A0A0A0KCY0	4.6e-27	71.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124190 PE=4 SV=1	[more]
A5BAN6	2.5e-09	48.35	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044272 PE=4 SV=1	[more]
A0A0A0K3N0	2.5e-09	47.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1	[more]
A0A2N9IXN3	2.5e-09	40.52	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1	[more]

BLAST of CcUC02G028080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09280.1	2.2e-05	34.95	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34558	EXPRESSED PROTEIN	coord: 5..96
None	No IPR available	PANTHER	PTHR34558:SF4	EXPRESSED PROTEIN	coord: 5..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G028080.1	CcUC02G028080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane