CcUC02G027220 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G027220
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr02: 15362314 .. 15362969 (+)
RNA-Seq Expression	CcUC02G027220
Synteny	CcUC02G027220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAAGAAAACCCTGTTCTGTTTAGTTTTCTTACTAGTTCTAAAAGTGATCGTAAAGTTCCCCGCTATCGAGTGTGATAAAGCCAAGTTTTCAAGTAGCCAAAAGCTAGTTTGATTGGATGTGCCAGTAGGGCTTCCTAACGTTCTATAATCAACTTAAGCTATCACGAAAAGGCTAAAGATAAAAAAAAGCGAATCATCTTTCTTTCTATACGATACGCAATTTCGAAATCAGGGAAAAATTCATCTTGATAGCACAGGAAAGAGAGAACATCTTCCTTCTGTGACATTTACCCAGAAAAAAAAGCCTATTCTATACCAGCTTCTTCTATAGATGAGATAACTGGAGCAGATTCAATAGTAAGGGATATTCACCCAGCAGCTCAAGCAGCAGATTCTATTCTGGGCATGAATGTGCAATCTAAAGACTCGCAAGTTTTTTTCCTATACTTCCCACCGTGGCAGCCTCTAACTCTAAAGCGTTAGTATATATTATATAAAGTGCGCTTTTGGCCTTAGCAGCAAGTACCTTCTACTCCTTGGCATTCACGGATTGGTTATGTAACAATGCTTCTTGTAAGGATCTTCAGTTTGGTTTTGATTGCCAGTGGCGTACGACCTTCTGTGCGATAGCATGGAAGATTTTGGTTTAG

mRNA sequence

ATGGGAAAAGAAAACCCTGTTCTGTTTAGTTTTCTTACTAGTTCTAAAAGTGATCGTAAAGTTCCCCGCTATCGAGTTGCGCTTTTGGCCTTAGCAGCAAGTACCTTCTACTCCTTGGCATTCACGGATTGGTTATGTAACAATGCTTCTTGTAAGGATCTTCAGTTTGGTTTTGATTGCCAGTGGCGTACGACCTTCTGTGCGATAGCATGGAAGATTTTGGTTTAG

Coding sequence (CDS)

ATGGGAAAAGAAAACCCTGTTCTGTTTAGTTTTCTTACTAGTTCTAAAAGTGATCGTAAAGTTCCCCGCTATCGAGTTGCGCTTTTGGCCTTAGCAGCAAGTACCTTCTACTCCTTGGCATTCACGGATTGGTTATGTAACAATGCTTCTTGTAAGGATCTTCAGTTTGGTTTTGATTGCCAGTGGCGTACGACCTTCTGTGCGATAGCATGGAAGATTTTGGTTTAG

Protein sequence

MGKENPVLFSFLTSSKSDRKVPRYRVALLALAASTFYSLAFTDWLCNNASCKDLQFGFDCQWRTTFCAIAWKILV

Homology

[Close]

BLAST of CcUC02G027220 vs. NCBI nr
Match: KJB09803.1 (hypothetical protein B456_001G167900 [Gossypium raimondii])

HSP 1 Score: 80.5 bits (197), Expect = 6.9e-12
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCNNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SLAFTDWLC+NA CKDL+FGFDCQWRTTF AIAWKILV
Sbjct: 19 MSIKVPSTHSLAFTDWLCSNAFCKDLKFGFDCQWRTTFYAIAWKILV 65

[Close]

BLAST of CcUC02G027220 vs. NCBI nr
Match: KAG4125508.1 (hypothetical protein ERO13_D10G099550v2 [Gossypium hirsutum])

HSP 1 Score: 77.0 bits (188), Expect = 7.6e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCNNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SL FTDWLCNN  CKDL+FGFDCQWRTTF AIAWKI V
Sbjct: 19 MSIKVPSTHSLKFTDWLCNNTFCKDLKFGFDCQWRTTFYAIAWKIYV 65

[Close]

BLAST of CcUC02G027220 vs. NCBI nr
Match: KAB2008569.1 (hypothetical protein ES319_D10G107800v1 [Gossypium barbadense])

HSP 1 Score: 77.0 bits (188), Expect = 7.6e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCNNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SL FTDWLCNN  CKDL+FGFDCQWRTTF AIAWKI V
Sbjct: 19 MSIKVPSTHSLKFTDWLCNNTFCKDLKFGFDCQWRTTFYAIAWKIYV 65

[Close]

BLAST of CcUC02G027220 vs. NCBI nr
Match: TYG49702.1 (hypothetical protein ES288_D10G115300v1 [Gossypium darwinii] >TYI60577.1 hypothetical protein E1A91_D10G113000v1 [Gossypium mustelinum])

HSP 1 Score: 77.0 bits (188), Expect = 7.6e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCNNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SL FTDWLCNN  CKDL+FGFDCQWRTTF AIAWKI V
Sbjct: 19 MSIKVPSTHSLKFTDWLCNNTFCKDLKFGFDCQWRTTFYAIAWKIYV 65

[Close]

BLAST of CcUC02G027220 vs. NCBI nr
Match: TYH49160.1 (hypothetical protein ES332_D10G117000v1 [Gossypium tomentosum])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCNNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SL FTDWLCNN  CKDL+FGFD QWRTTF AIAWKI V
Sbjct: 19 MSIKVPSTHSLKFTDWLCNNTFCKDLKFGFDYQWRTTFYAIAWKIYV 65

[Close]

BLAST of CcUC02G027220 vs. ExPASy TrEMBL
Match: A0A0D2NAD0 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G167900 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.3e-12
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCNNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SLAFTDWLC+NA CKDL+FGFDCQWRTTF AIAWKILV
Sbjct: 19 MSIKVPSTHSLAFTDWLCSNAFCKDLKFGFDCQWRTTFYAIAWKILV 65

[Close]

BLAST of CcUC02G027220 vs. ExPASy TrEMBL
Match: A0A5J5PPL4 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D10G107800v1 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.7e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCNNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SL FTDWLCNN  CKDL+FGFDCQWRTTF AIAWKI V
Sbjct: 19 MSIKVPSTHSLKFTDWLCNNTFCKDLKFGFDCQWRTTFYAIAWKIYV 65

[Close]

BLAST of CcUC02G027220 vs. ExPASy TrEMBL
Match: A0A5D2B2B4 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D10G115300v1 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.7e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCNNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SL FTDWLCNN  CKDL+FGFDCQWRTTF AIAWKI V
Sbjct: 19 MSIKVPSTHSLKFTDWLCNNTFCKDLKFGFDCQWRTTFYAIAWKIYV 65

[Close]

BLAST of CcUC02G027220 vs. ExPASy TrEMBL
Match: A0A5D2T5R8 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D10G113000v1 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.7e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCNNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SL FTDWLCNN  CKDL+FGFDCQWRTTF AIAWKI V
Sbjct: 19 MSIKVPSTHSLKFTDWLCNNTFCKDLKFGFDCQWRTTFYAIAWKIYV 65

[Close]

BLAST of CcUC02G027220 vs. ExPASy TrEMBL
Match: A0A5D2J359 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D10G117000v1 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.9e-10
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 29 LALAASTFYSLAFTDWLCNNASCKDLQFGFDCQWRTTFCAIAWKILV 76
          +++   + +SL FTDWLCNN  CKDL+FGFD QWRTTF AIAWKI V
Sbjct: 19 MSIKVPSTHSLKFTDWLCNNTFCKDLKFGFDYQWRTTFYAIAWKIYV 65

The following BLAST results are available for this feature:

BLAST of CcUC02G027220 vs. NCBI nr


Match Name	E-value	Identity	Description
KJB09803.1	6.9e-12	72.34	hypothetical protein B456_001G167900 [Gossypium raimondii]	[more]
KAG4125508.1	7.6e-11	68.09	hypothetical protein ERO13_D10G099550v2 [Gossypium hirsutum]	[more]
KAB2008569.1	7.6e-11	68.09	hypothetical protein ES319_D10G107800v1 [Gossypium barbadense]	[more]
TYG49702.1	7.6e-11	68.09	hypothetical protein ES288_D10G115300v1 [Gossypium darwinii] >TYI60577.1 hypothe...	[more]
TYH49160.1	1.4e-09	65.96	hypothetical protein ES332_D10G117000v1 [Gossypium tomentosum]	[more]

BLAST of CcUC02G027220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G027220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0D2NAD0	3.3e-12	72.34	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G167900 PE=4 ...	[more]
A0A5J5PPL4	3.7e-11	68.09	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D10G107800v1 PE...	[more]
A0A5D2B2B4	3.7e-11	68.09	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D10G115300v1 PE=...	[more]
A0A5D2T5R8	3.7e-11	68.09	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D10G113000v1 P...	[more]
A0A5D2J359	6.9e-10	65.96	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D10G117000v1 P...	[more]

BLAST of CcUC02G027220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G027220.1	CcUC02G027220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane