CcUC02G026490 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G026490
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Ribosomal_L30 domain-containing protein
Location	CicolChr02: 12630636 .. 12633157 (-)
RNA-Seq Expression	CcUC02G026490
Synteny	CcUC02G026490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCCCATGACGTCGATTCATCCTATGGCCTTGCCTCGCGCCATATTTGCTCTCCCCGTCAAAGATGCACTGGATCTACGTGCCAGAAGATGCACTAGATCTACTTGCCACGTTGTCCGTGTGCCACCTGCAACTCACACTGCGGGAAGGAGAAAAGACACTGGTGTTAGTGAAAAAACAAAAGCCATAATTTTTTTTTTTTTTTTAATGAAAGGTCCAAGAGCCCTTAATTGAAGGCATTTTATGTCAGAAAGCCCAAATTATTGTAGTTTAGAGCAGGAGCAGCCCAAATGGACAATAAGTTATAACTAAATAAAAAAACAGAAAAATAAAACAATCAAACCCTAAAATCAGATTTCCCTCACAAACCCACACAGCCTCCAATCTTCTCTTCGTCAGTTCGTCTTCAACGCAAGCCCCTCCTCATCATCTTACTATTTATTCGTCTGAGCAACTCTATTTTCCGGGCCTACGCCGTTTCGCCGCCGACCGTCAGCCTCGTTGCCGACCACGCCTCAACCTCGCCATCGACCATCTCGCCGCGCTTTGCCTTGTCACCACCACCGCCGGTCAATTTCAAAGCTCTCTGTTTTCTCCCTCTTTTTTCACTCTGTTTTGAAACCTTCTTTAATTTTAACCTAAATTATTATGTAGGTAGTTAAAGTAATATGCATCTTCATCCTCAACCCAAGGTCAATTTATATGTAAAGAAAAAATATAAAAATGTATATAAATCTTTTTTTAAGAAATTAACGAATCGCCGTATCCTACATTACTTTTAGAGGATTTTATTGAAAGCTTCAAGTGGATATGAAGATGAAGTAAGTGTCTATTTGAGATGACGAAATCGTGGCATAAATGTGGTTTCTACTTAAAACTATCATCTATATCTTTTTATGTCTTTTTATGTTTTAGTTGTGCAACTAGAGCATTTGGTAGAGCTTCCAATCTATTGAAGATGTTCATTTGTTTACTCGAAATTTGGGAACTGCAAAAAGGTTTTCCTGCCCAACAAATTAAAAGATTTCGTTGAGGTGCTTAGGTGAGATTGTTGATGTGTTTGTAGAGAAAACTGTTTCTTAACCTTTGTTTTTGTTTTGTAGATTTTGGAGATCTTGGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCATGGAGTCCTAATCTTTATATCACACTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGTACATTAGAGGCGTTGCGGCTCCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTTGCTTTATATACTTGTTCTCTACTATGGGGACTGAATGTTGAATGTTGTTGTTTTTTGTTTTTATTTATTATTATTATTATTTCTTTTTGTTATTTGATTATAGGTAAAGCGATTAATAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCCCTCCGACCTCCATTAGTTGTAAACCACCTTCCGGCTCCAAAGTCTGCTCCTGCCTCTTGAAACATGTATTGTTGTTAGAGGTCAGGTCTACTTCTTAAGAATCGATATGATGTTGAAAAGAATTATATTTGAGCAGTGTATTTTATTTTTTTTTTTTTTTTAATTACTTGACAATGAAGGCTTTTATGCTCTATTCATCTTGCTGAGTCTAGTTGCTAGCTAAAATAATTACTGGAACGCATGCTAGTTCAATGTCTATCAAAAGCATTTGATGAAAGCTACTTTCTGTAAGAAACTTGCTATGAGACACGGCTGTTTTTGCATAAATGAATGCATGCCCGTTTGACTTGAGAACATTAGTTGAAATATGCTTAATGATTTGGATCATATAAAACAGAACCTAGGGGAAGACAAAATGGCAGTGGCTTATCTGCGCATTAATGGTAAAAGTATAGGATGCTTGTAGCTACAGGCTTTGAGATATTCAAACACATACAGGATTTTAAACTTATAAAAGGGCACCTTGAAGCAACAACCTTACTTGAACATGATCTGTTCTATAGGTTGCATGACTGTGTCCTTGATTTCTAAAAGGAGCACCTTGAAGCACACACTCTTAAGTTTCTGTTGCCTTCATGCTTATTGGCCCTTCCATTTCAAGTGTGACCATGTCATTTGAAGTCTTCAGCTCCTCATTGTTGTCTTTGGAGCTGACATAATGCTGGTCTTTATACTGATGTTTCCGGGCAAGAAGAAGAAAAAGGAAAAAGTTTAGCAGGCCTAACACTGCAAGTAGCCAATAGAAGTAGTTCAAGTTTCCCTTGTTGAGATTACTTCTCAGCCAGTGCTTGTTGGTTACTTTATCTACAATTGTTACCAACAAACTACTAACAAAAAACCCCATGGAAAGAGTGCTTAGAAAAAGTCCTGTGCTCATGGATTTCATTCTTTCCGGTGCTTCTCTGATGAAAAACTCGAGTTGTCCAACATATGCAAATGCTTCTCCAGCACCAACCAAGAAGAATTGA

mRNA sequence

AAGCCCATGACGTCGATTCATCCTATGGCCTTGCCTCGCGCCATATTTGCTCTCCCCGTCAAAGATGCACTGGATCTACGTGCCAGAAGATGCACTAGATCTACTTGCCACGTTGTCCGTGTGCCACCTGCAACTCACACTGCGGGAAGGAGAAAAGACACTGGTATTTTGGAGATCTTGGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCATGGAGTCCTAATCTTTATATCACACTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGTACATTAGAGGCGTTGCGGCTCCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAATAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCCCTCCGACCTCCATTAGTTGTAAACCACCTTCCGGCTCCAAACCAGTGCTTGTTGGTTACTTTATCTACAATTGTTACCAACAAACTACTAACAAAAAACCCCATGGAAAGAGTGCTTAGAAAAAGTCCTGTGCTCATGGATTTCATTCTTTCCGGTGCTTCTCTGATGAAAAACTCGAGTTGTCCAACATATGCAAATGCTTCTCCAGCACCAACCAAGAAGAATTGA

Coding sequence (CDS)

AAGCCCATGACGTCGATTCATCCTATGGCCTTGCCTCGCGCCATATTTGCTCTCCCCGTCAAAGATGCACTGGATCTACGTGCCAGAAGATGCACTAGATCTACTTGCCACGTTGTCCGTGTGCCACCTGCAACTCACACTGCGGGAAGGAGAAAAGACACTGGTATTTTGGAGATCTTGGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCATGGAGTCCTAATCTTTATATCACACTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGTACATTAGAGGCGTTGCGGCTCCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAATAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCCCTCCGACCTCCATTAGTTGTAAACCACCTTCCGGCTCCAAACCAGTGCTTGTTGGTTACTTTATCTACAATTGTTACCAACAAACTACTAACAAAAAACCCCATGGAAAGAGTGCTTAGAAAAAGTCCTGTGCTCATGGATTTCATTCTTTCCGGTGCTTCTCTGATGAAAAACTCGAGTTGTCCAACATATGCAAATGCTTCTCCAGCACCAACCAAGAAGAATTGA

Protein sequence

KPMTSIHPMALPRAIFALPVKDALDLRARRCTRSTCHVVRVPPATHTAGRRKDTGILEILDMNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPNQCLLVTLSTIVTNKLLTKNPMERVLRKSPVLMDFILSGASLMKNSSCPTYANASPAPTKKN

Homology

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BLAST of CcUC02G026490 vs. NCBI nr
Match: KAG6604875.1 (hypothetical protein SDJN03_02192, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209.9 bits (533), Expect = 2.2e-50
Identity = 102/109 (93.58%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 56  ILEILDMNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWN 115
           ILE+LDMNAFKAFKANVPIAWSPNLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWN
Sbjct: 32  ILEVLDMNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWN 91

Query: 116 TPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPN 165
           TPTVRGM+QQVKRL+VVETEEM+KARKQKVEQHK+LRPPLVVNHLPAP+
Sbjct: 92  TPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLPAPS 140

[Close]

BLAST of CcUC02G026490 vs. NCBI nr
Match: XP_038901296.1 (50S ribosomal protein L30 [Benincasa hispida] >XP_038901297.1 50S ribosomal protein L30 [Benincasa hispida] >XP_038901298.1 50S ribosomal protein L30 [Benincasa hispida])

HSP 1 Score: 201.8 bits (512), Expect = 6.1e-48
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 62  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 121
           MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 122 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAP 164
           MLQQVKRLIVVETEEMYKARKQKVEQHKALRPP+VV+HLPAP
Sbjct: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLPAP 102

[Close]

BLAST of CcUC02G026490 vs. NCBI nr
Match: XP_023512952.1 (uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.8 bits (512), Expect = 6.1e-48
Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 62  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 121
           MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 122 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPN 165
           MLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLPAP+
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPAPS 103

[Close]

BLAST of CcUC02G026490 vs. NCBI nr
Match: XP_022947175.1 (uncharacterized protein LOC111451121 [Cucurbita moschata] >KAG7034985.1 rpmD [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.5 bits (506), Expect = 3.0e-47
Identity = 97/103 (94.17%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 62  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 121
           MNAFKAFKANVPIAWSPNLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 122 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPN 165
           M+QQVKRL+VVETEEM+KARKQKVEQHK+LRPPLVVNHLPAP+
Sbjct: 61  MIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLPAPS 103

[Close]

BLAST of CcUC02G026490 vs. NCBI nr
Match: XP_022140468.1 (uncharacterized protein LOC111011134 [Momordica charantia])

HSP 1 Score: 199.5 bits (506), Expect = 3.0e-47
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 62  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 121
           MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60

Query: 122 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPN 165
           M+QQVKRL+VVETEEMYKARKQKVEQHKALRPPLVVNHLP P+
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLPVPS 103

[Close]

BLAST of CcUC02G026490 vs. ExPASy Swiss-Prot
Match: Q8FS51 (50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) OX=196164 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.9e-04
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 80  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 134
           L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ LIVVE
Sbjct: 3   LKITQVKGTIGTKPKHRDNLRSLGLKRIRHSVVRPDTPEVRGMVQAVRHLIVVE 56

[Close]

BLAST of CcUC02G026490 vs. ExPASy Swiss-Prot
Match: Q8NSX3 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.9e-04
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 80  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 134
           L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ LIVVE
Sbjct: 3   LKITQIKGTVGTKPKHRENLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

[Close]

BLAST of CcUC02G026490 vs. ExPASy Swiss-Prot
Match: A4QBL5 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.3e-04
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 80  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 134
           L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ LIVVE
Sbjct: 3   LKITQIKGTVGTKPKHRDNLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

[Close]

BLAST of CcUC02G026490 vs. ExPASy Swiss-Prot
Match: A8ZV75 (50S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 39069 / Hxd3) OX=96561 GN=rpmD PE=3 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 3.3e-04
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 77  SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 134
           S ++ +TL + M G    HR+ L A+ L K NRTV   +TPTV+GM+++V  L+ VE
Sbjct: 2   SGSIKVTLAKSMIGRPEKHRKVLRAMGLTKVNRTVCLQDTPTVQGMIRKVSHLLRVE 58

[Close]

BLAST of CcUC02G026490 vs. ExPASy Swiss-Prot
Match: C3PL27 (50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CIP 107346 / CN-1) OX=548476 GN=rpmD PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.3e-04
Identity = 22/54 (40.74%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 80  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 134
           L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ L+ VE
Sbjct: 3   LKITQVKGLVGTKPNHRANMESLGLKRIGHSVVKQDTPIIRGMVHKVRHLVTVE 56

[Close]

BLAST of CcUC02G026490 vs. ExPASy TrEMBL
Match: A0A6J1CI25 (uncharacterized protein LOC111011134 OS=Momordica charantia OX=3673 GN=LOC111011134 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 62  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 121
           MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60

Query: 122 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPN 165
           M+QQVKRL+VVETEEMYKARKQKVEQHKALRPPLVVNHLP P+
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLPVPS 103

[Close]

BLAST of CcUC02G026490 vs. ExPASy TrEMBL
Match: A0A6J1G641 (uncharacterized protein LOC111451121 OS=Cucurbita moschata OX=3662 GN=LOC111451121 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 97/103 (94.17%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 62  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 121
           MNAFKAFKANVPIAWSPNLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 122 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPN 165
           M+QQVKRL+VVETEEM+KARKQKVEQHK+LRPPLVVNHLPAP+
Sbjct: 61  MIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLPAPS 103

[Close]

BLAST of CcUC02G026490 vs. ExPASy TrEMBL
Match: A0A6J1FUA4 (uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC111448848 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 62  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 121
           MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 122 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPN 165
           MLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLP+P+
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPS 103

[Close]

BLAST of CcUC02G026490 vs. ExPASy TrEMBL
Match: A0A1S3C214 (50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 4.3e-47
Identity = 95/103 (92.23%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 62  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 121
           MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 122 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPN 165
           M+QQVKRL+VVETEEMYKARKQK+E+H+ALRPPLV+NHLPAP+
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPS 103

[Close]

BLAST of CcUC02G026490 vs. ExPASy TrEMBL
Match: A0A5A7VAZ6 (50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00090 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 4.3e-47
Identity = 95/103 (92.23%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 62  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 121
           MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 122 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPN 165
           M+QQVKRL+VVETEEMYKARKQK+E+H+ALRPPLV+NHLPAP+
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPS 103

[Close]

BLAST of CcUC02G026490 vs. TAIR 10
Match: AT5G55140.1 (ribosomal protein L30 family protein )

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-33
Identity = 67/98 (68.37%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 62  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 121
           M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RG
Sbjct: 1   MSGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRG 60

Query: 122 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNH 160
           M+ QVKR++VVETEEMY ARK+    HKALRPPLVV+H
Sbjct: 61  MIDQVKRMVVVETEEMYNARKEAEANHKALRPPLVVSH 98

The following BLAST results are available for this feature:

BLAST of CcUC02G026490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604875.1	2.2e-50	93.58	hypothetical protein SDJN03_02192, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038901296.1	6.1e-48	98.04	50S ribosomal protein L30 [Benincasa hispida] >XP_038901297.1 50S ribosomal prot...	[more]
XP_023512952.1	6.1e-48	97.09	uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]	[more]
XP_022947175.1	3.0e-47	94.17	uncharacterized protein LOC111451121 [Cucurbita moschata] >KAG7034985.1 rpmD [Cu...	[more]
XP_022140468.1	3.0e-47	95.15	uncharacterized protein LOC111011134 [Momordica charantia]	[more]

BLAST of CcUC02G026490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8FS51	1.9e-04	50.00	50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-31...	[more]
Q8NSX3	1.9e-04	48.15	50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM...	[more]
A4QBL5	3.3e-04	48.15	50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=...	[more]
A8ZV75	3.3e-04	43.86	50S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 390...	[more]
C3PL27	4.3e-04	40.74	50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / D...	[more]

BLAST of CcUC02G026490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CI25	1.5e-47	95.15	uncharacterized protein LOC111011134 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1G641	1.5e-47	94.17	uncharacterized protein LOC111451121 OS=Cucurbita moschata OX=3662 GN=LOC1114511...	[more]
A0A6J1FUA4	1.5e-47	95.15	uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC1114488...	[more]
A0A1S3C214	4.3e-47	92.23	50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1	[more]
A0A5A7VAZ6	4.3e-47	92.23	50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of CcUC02G026490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55140.1	1.6e-33	68.37	ribosomal protein L30 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016082	Ribosomal protein L30, ferredoxin-like fold domain	PFAM	PF00327	Ribosomal_L30	coord: 81..130 e-value: 9.6E-16 score: 57.4
IPR005996	Ribosomal protein L30, bacterial-type	TIGRFAM	TIGR01308	TIGR01308	coord: 80..133 e-value: 3.7E-18 score: 63.0
IPR005996	Ribosomal protein L30, bacterial-type	PANTHER	PTHR15892	MITOCHONDRIAL RIBOSOMAL PROTEIN L30	coord: 62..165
IPR005996	Ribosomal protein L30, bacterial-type	HAMAP	MF_01371_B	Ribosomal_L30_B	coord: 77..134 score: 14.914772
IPR005996	Ribosomal protein L30, bacterial-type	CDD	cd01658	Ribosomal_L30	coord: 80..133 e-value: 3.17934E-15 score: 65.5202
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	GENE3D	3.30.1390.20		coord: 78..139 e-value: 1.4E-17 score: 64.8
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	SUPERFAMILY	55129	Ribosomal protein L30p/L7e	coord: 80..133
None	No IPR available	PANTHER	PTHR15892:SF4	RIBOSOMAL PROTEIN L30, FERREDOXIN-LIKE FOLD DOMAIN-CONTAINING PROTEIN-RELATED	coord: 62..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G026490.1	CcUC02G026490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome