CcUC02G026270 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G026270
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
Location	CicolChr02: 12032160 .. 12032423 (-)
RNA-Seq Expression	CcUC02G026270
Synteny	CcUC02G026270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCGGGAAATTATGGAGTCGAAGACGACGACGACAAGGCAGTGACAAAGAAAGGGAGCAGCAATGGCAATAGTAGCAAGAAGATGGCAGAGGTAAAGGCAGCTGCCTCAGCTGGATTTGTGAAGGCAAAGGCCGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGA

mRNA sequence

ATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCGGGAAATTATGGAGTCGAAGACGACGACGACAAGGCAGTGACAAAGAAAGGGAGCAGCAATGGCAATAGTAGCAAGAAGATGGCAGAGGTAAAGGCAGCTGCCTCAGCTGGATTTGTGAAGGCAAAGGCCGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGA

Coding sequence (CDS)

ATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCGGGAAATTATGGAGTCGAAGACGACGACGACAAGGCAGTGACAAAGAAAGGGAGCAGCAATGGCAATAGTAGCAAGAAGATGGCAGAGGTAAAGGCAGCTGCCTCAGCTGGATTTGTGAAGGCAAAGGCCGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGA

Protein sequence

MGSKAPSWADQWGSGNYGVEDDDDKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQKVKSGTSVGIKWVKNQYQKKVSK

Homology

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BLAST of CcUC02G026270 vs. NCBI nr
Match: KAA0059574.1 (hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE8652289.1 hypothetical protein Csa_022099 [Cucumis sativus] >TYK24204.1 hypothetical protein E5676_scaffold27G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 5.7e-34
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDD-DKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSGNYGVEDDD + AVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          TVGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

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BLAST of CcUC02G026270 vs. NCBI nr
Match: KAG7010736.1 (hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-32
Identity = 79/87 (90.80%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDDDKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 60
          MGSKAPSWADQWGSG+YGVEDDD+ A+TKKGSSNGNSSKKMA+VKAAASAGFVKAK+ A 
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 VGAQKVKSGTSVGIKWVKNQYQKKVSK 87

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BLAST of CcUC02G026270 vs. NCBI nr
Match: KAG7034974.1 (hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.7 bits (369), Expect = 9.0e-32
Identity = 81/87 (93.10%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1   MGSKAPSWADQWGSGNYGVEDDDDKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 60
           MGSKAPSWADQWGSGNYGVE DDDK V KKGSSNG+SSKKM EVKAAASAGFVKAKAVA 
Sbjct: 91  MGSKAPSWADQWGSGNYGVE-DDDKMVAKKGSSNGSSSKKMTEVKAAASAGFVKAKAVAA 150

Query: 61  VGAQKVKSGTSVGIKWVKNQYQKKVSK 88
           VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 151 VGAQKVKSGTSVGIKWVKNQYQKKVSK 176

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BLAST of CcUC02G026270 vs. NCBI nr
Match: KAG6570886.1 (hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145.6 bits (366), Expect = 2.0e-31
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDDDKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 60
          MGSKAPSWADQWGSG+YGVEDDD+ A+TKKGSSNGNSSKKMA+VKAAASAGFVKAK+ A 
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVS 87
          VGAQKVKSGTSVGIKWVKNQYQKK S
Sbjct: 61 VGAQKVKSGTSVGIKWVKNQYQKKKS 86

[Close]

BLAST of CcUC02G026270 vs. NCBI nr
Match: KAG6604861.1 (hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.6 bits (353), Expect = 6.5e-30
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1   MGSKAPSWADQWGSGNYGVEDDDDKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 60
           MGSKAPSWADQWGSGNYGVE DDDK V KKGS NG+SSKKM EVKAAASAGFVKAKAVA 
Sbjct: 80  MGSKAPSWADQWGSGNYGVE-DDDKMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVAA 139

Query: 61  VGAQKVKSGTSVGIKWVKNQYQKK 85
           VGAQKVKSGTSVGIKWVKNQYQKK
Sbjct: 140 VGAQKVKSGTSVGIKWVKNQYQKK 162

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BLAST of CcUC02G026270 vs. ExPASy TrEMBL
Match: A0A5D3DKS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00040 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.7e-34
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDD-DKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSGNYGVEDDD + AVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          TVGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

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BLAST of CcUC02G026270 vs. ExPASy TrEMBL
Match: A0A0A0LR11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.7e-34
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1   MGSKAPSWADQWGSGNYGVEDDD-DKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
           MGSKAPSWADQWGSGNYGVEDDD + AVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 86  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 145

Query: 61  TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
           TVGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 146 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 173

[Close]

BLAST of CcUC02G026270 vs. ExPASy TrEMBL
Match: A0A5C7HG95 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.0e-26
Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDDDKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 60
          MGSKAPSWADQWGSG++G E+DD+K VTKK SS+G SSKKMAE KAAASAGF KAKA A+
Sbjct: 1  MGSKAPSWADQWGSGSFGDEEDDNKLVTKK-SSSGGSSKKMAEAKAAASAGFDKAKAAAS 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVS 87
          VGAQKVKSGTSVG+KWVK QYQKK S
Sbjct: 61 VGAQKVKSGTSVGLKWVKKQYQKKSS 85

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BLAST of CcUC02G026270 vs. ExPASy TrEMBL
Match: V4UEV4 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.4e-22
Identity = 62/86 (72.09%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 1  MGSKAPSWADQWGSGNYGVEDDDDKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 60
          MGSKAPSWADQWG+G +GV+++DDK VTK  SS+G +  K+ EVKAAASAGF KAK+ A 
Sbjct: 1  MGSKAPSWADQWGTGGFGVDEEDDKLVTKNASSSGGN--KITEVKAAASAGFDKAKSAAA 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVS 87
          VGAQKVK+GTS GIKWVK QYQKK S
Sbjct: 61 VGAQKVKAGTSAGIKWVKKQYQKKGS 84

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BLAST of CcUC02G026270 vs. ExPASy TrEMBL
Match: A0A2P5EE64 (CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase OS=Trema orientale OX=63057 GN=TorRG33x02_203810 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.0e-22
Identity = 67/98 (68.37%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 1   MGSKAPSWADQWGSGNYGVEDDDDKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 60
           MGSKAPSW+DQWG  N+GVE DDDKA T KG  +G SSKKMAE KA ASAG  KAKA A 
Sbjct: 12  MGSKAPSWSDQWGGNNFGVEGDDDKAGTNKGKGSG-SSKKMAEAKAMASAGLGKAKAAAA 71

Query: 61  V-----------GAQKVKSGTSVGIKWVKNQYQKKVSK 88
           V           GAQKVKSGTS+GIKWVKNQYQK+ SK
Sbjct: 72  VGADKAKVAAIFGAQKVKSGTSLGIKWVKNQYQKRTSK 108

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BLAST of CcUC02G026270 vs. TAIR 10
Match: AT3G48180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19020.1); Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05
Identity = 32/81 (39.51%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 7  SWADQWGSGNYGVEDDDDKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQKV 66
          SWA+QW S      +      T  G   G +S K    K    AG  K KA A+ G +KV
Sbjct: 5  SWAEQWDS------NQQSSGKTTHGGEGGGASSK---YKEKVGAGLGKTKAAASSGLKKV 64

Query: 67 KSGTSVGIKWVKNQYQKKVSK 88
          K GTS+G+ WVK++Y K  +K
Sbjct: 65 KIGTSLGLNWVKDKYNKTTTK 76

[Close]

BLAST of CcUC02G026270 vs. TAIR 10
Match: AT1G19020.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 6.5e-04
Identity = 26/81 (32.10%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 7  SWADQWGSGNYGVEDDDDKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQKV 66
          SWADQW +     +     +     SS   ++    + K     G  K KAVA+ G +K+
Sbjct: 5  SWADQWDNSGDSAKGGRIGSGAVVRSSGSGATSNTTKYKEKMGQGLDKTKAVASSGFKKL 64

Query: 67 KSGTSVGIKWVKNQYQKKVSK 88
          K+G+++G +WVK++Y K   K
Sbjct: 65 KTGSAIGFRWVKDKYHKTTHK 85

The following BLAST results are available for this feature:

BLAST of CcUC02G026270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059574.1	5.7e-34	96.59	hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE865...	[more]
KAG7010736.1	1.4e-32	90.80	hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7034974.1	9.0e-32	93.10	hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6570886.1	2.0e-31	89.53	hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6604861.1	6.5e-30	91.67	hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CcUC02G026270 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G026270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DKS5	2.7e-34	96.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LR11	2.7e-34	96.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1	[more]
A0A5C7HG95	8.0e-26	81.40	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1	[more]
V4UEV4	2.4e-22	72.09	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 ...	[more]
A0A2P5EE64	7.0e-22	68.37	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase OS=Trema orien...	[more]

BLAST of CcUC02G026270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48180.1	2.0e-05	39.51	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G19020.1	6.5e-04	32.10	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	PANTHER	PTHR33386	OS02G0740600 PROTEIN	coord: 1..87
None	No IPR available	PANTHER	PTHR33386:SF13	ANKYRIN REPEAT PROTEIN	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G026270.1	CcUC02G026270.1	mRNA