CcUC02G025220 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G025220
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr02: 9784894 .. 9786629 (-)
RNA-Seq Expression	CcUC02G025220
Synteny	CcUC02G025220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCATTCAAACAAACAAGAAGACTAACGATAGAAGAGTGGAGACAAGTCCGTCTCTATATTTTAAAGAAATGTGAGAGTGTCCTCCCATATATTAGGTATGTAAAAGTTCTCTTATGATAATTTTTTTAATATTTTAAAATAGAATCTAAAGTAACTTTTTAATTTTTTTAGTGAGCACATACAAGGATTACAACATCTTGATCCTAAAAACGCACAAAGTAAGCATGATAAAGAGTTTGTAAACTGGTTGAAGATCATGTAAGTGAGAAAAGACAATAGGTATGATATTTATTTATCAATACAATTTCTACTCATTTTTAAATATGATAGTATTTTCTATGTAGATTACTAAATTATATATTGATGGAAGCAACAAAGTTGACAAACAATTATTAGATTTATCTTGAGGTCCATCACAAGAAGTAACATGCTACAAAGGGTACATTGTTAATGGTTTTAGATTTCGTATCAAGGATGATGATGATTTAAGAAAAACACAAAATAGTGGGATCGTAGTGAGAGAAACTGATGATCAAGAGTACTTCGGTGAATTGCATGATATTATTGAATTGCAATATATGGGAGGAAACAAAATTGTTTTGCTTAAATGTAAATGGTAGAATATCAATAGTCTCGGTAAAGGAATTAGAATTGATGGTCATGAACTAACTAGTGTGAATATGATATACACATTGGCTATAAATGAACCATTTGTATTAGCATGCCAATCTGAAAAAGTTTTTTACCTTCAAAACAGAAGAAACTCAATTTGGTATTTTGTGTTGAAAGTTGATCCAAGAGATTATTACAATATCCCTTTGATCATAGATGAAGATTGTCAAGAAAAAGATGACTAAGAAGACGACAGTAGAGGAATTTAATTCTTAATTTTTTCGTCTGTCATTTATGTTAGGTAATCTCTTTTTTAAACTTTATAATAATATATGATATTTTTTGTTTCTTAAACTAATATACAATTTTTATTATGTGTTATTTATCTAGCTTGCTTTTTCCATCAAGTTTACTATTTGTGTAAGGATGAAAAAAGTAAGAACCAGATTCAACAACAATGTTAGTATATAGTCGCGAGAATACTACGATTGCATCTACATCTAATCAAATAGTTGATGATCAACAATCTTCAACAAAATCTAAAGCAAAAGTTGGTTTAGAAGTTTCATCGTTGTTTACGGGAGAAGGATCAACTACTAGTCATGAAAAGTTTCTTAATAGATCAGGTAACATATATTTTATAATATATATATTATTTATGTTTGATGTGTTACTAACTTACTTTCTCTTCTTCCTTTTTACTTTAGAATCTTCTTCTAGAGAAATAAAAGCACGTGGTCCCACACGTAATTTCAAATTGGTTAAACTACCTAATGGAATTAGATTTAAAGTATCATGGAGGAACAAACGATTTAAACTACCTGTTGGAGATAATGCTGATATCTTTAAAAGCCAATGCACTATCTTGGCTAGACAAGTCAATTTTACTCCTCTACAAGTGAAAAGTTGGAGAGATATTGATATAACAACAAAAAAGAATCTATTTGAGCTTACATTGATATGTGAAAAAATAATAGTTTTCTTCTTTAATTTAATTTTTTACATAATTATACTACAACTATCATTTTCTTTGCAGGAGCGATTTAAAATTGAAGGTCACGAGATTTCAGTATTGCTTCAAATTCACCGATCTTATAATAATTGGAGAGATAGTGTAA

mRNA sequence

ATGGGATCATTCAAACAAACAAGAAGACTAACGATAGAAGAGTGGAGACAAGTCCGTCTCTATATTTTAAAGAAATGTGAGAGTGTCCTCCCATATATTAGTGAGCACATACAAGGATTACAACATCTTGATCCTAAAAACGCACAAAGTAAGCATGATAAAGAGTTTGTAAACTGGTTGAAGATCATGAGCGATTTAAAATTGAAGGTCACGAGATTTCAGTATTGCTTCAAATTCACCGATCTTATAATAATTGGAGAGATAGTGTAA

Coding sequence (CDS)

ATGGGATCATTCAAACAAACAAGAAGACTAACGATAGAAGAGTGGAGACAAGTCCGTCTCTATATTTTAAAGAAATGTGAGAGTGTCCTCCCATATATTAGTGAGCACATACAAGGATTACAACATCTTGATCCTAAAAACGCACAAAGTAAGCATGATAAAGAGTTTGTAAACTGGTTGAAGATCATGAGCGATTTAAAATTGAAGGTCACGAGATTTCAGTATTGCTTCAAATTCACCGATCTTATAATAATTGGAGAGATAGTGTAA

Protein sequence

MGSFKQTRRLTIEEWRQVRLYILKKCESVLPYISEHIQGLQHLDPKNAQSKHDKEFVNWLKIMSDLKLKVTRFQYCFKFTDLIIIGEIV

Homology

[Close]

BLAST of CcUC02G025220 vs. NCBI nr
Match: XP_025646460.1 (uncharacterized protein LOC112741639 [Arachis hypogaea] >XP_025646471.1 uncharacterized protein LOC112741639 [Arachis hypogaea])

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 5   KQTRRLTIEEWRQVRLYILKKCESVLPYISEHIQGLQHLDPKNAQSKHDKEFVNWLK 62
           K TRRL++EE +Q  LYILKKC+ V P+I +H + L+  +P+N Q +HD+EF +W +
Sbjct: 849 KVTRRLSLEEIKQAHLYILKKCDQVTPFIYKHKEILEEENPRNVQKRHDQEFSDWFE 905

[Close]

BLAST of CcUC02G025220 vs. NCBI nr
Match: XP_029145441.1 (uncharacterized protein LOC112715238 isoform X3 [Arachis hypogaea])

HSP 1 Score: 64.3 bits (155), Expect = 6.0e-07
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 5   KQTRRLTIEEWRQVRLYILKKCESVLPYISEHIQGLQHLDPKNAQSKHDKEFVNWLK 62
           K TRRL++EE +Q  LYILK C+ V P+I +H + L+  +P+N Q +HD+EF +W +
Sbjct: 191 KVTRRLSLEEIKQAHLYILKNCDQVTPFICKHKEILEEENPRNVQKRHDQEFSDWFE 247

[Close]

BLAST of CcUC02G025220 vs. NCBI nr
Match: XP_029145439.1 (uncharacterized protein LOC112715238 isoform X1 [Arachis hypogaea])

HSP 1 Score: 64.3 bits (155), Expect = 6.0e-07
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 5   KQTRRLTIEEWRQVRLYILKKCESVLPYISEHIQGLQHLDPKNAQSKHDKEFVNWLK 62
           K TRRL++EE +Q  LYILK C+ V P+I +H + L+  +P+N Q +HD+EF +W +
Sbjct: 191 KVTRRLSLEEIKQAHLYILKNCDQVTPFICKHKEILEEENPRNVQKRHDQEFSDWFE 247

[Close]

BLAST of CcUC02G025220 vs. NCBI nr
Match: XP_029145440.1 (uncharacterized protein LOC112715238 isoform X2 [Arachis hypogaea])

HSP 1 Score: 64.3 bits (155), Expect = 6.0e-07
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 5   KQTRRLTIEEWRQVRLYILKKCESVLPYISEHIQGLQHLDPKNAQSKHDKEFVNWLK 62
           K TRRL++EE +Q  LYILK C+ V P+I +H + L+  +P+N Q +HD+EF +W +
Sbjct: 191 KVTRRLSLEEIKQAHLYILKNCDQVTPFICKHKEILEEENPRNVQKRHDQEFSDWFE 247

[Close]

BLAST of CcUC02G025220 vs. NCBI nr
Match: XP_020989473.1 (uncharacterized protein LOC107470678 isoform X2 [Arachis duranensis])

HSP 1 Score: 63.9 bits (154), Expect = 7.9e-07
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 5   KQTRRLTIEEWRQVRLYILKKCESVLPYISEHIQGLQHLDPKNAQSKHDKEFVNWLK 62
           K TRRL++EE +Q  LYILK C+ V P+I +H + L+  +P+N Q +HD+EF +W +
Sbjct: 191 KVTRRLSLEEIKQAHLYILKNCDQVTPFIYKHKEILEEENPRNVQKRHDQEFSDWFE 247

[Close]

BLAST of CcUC02G025220 vs. ExPASy TrEMBL
Match: A0A6P5N323 (uncharacterized protein LOC107470678 isoform X2 OS=Arachis duranensis OX=130453 GN=LOC107470678 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.8e-07
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 5   KQTRRLTIEEWRQVRLYILKKCESVLPYISEHIQGLQHLDPKNAQSKHDKEFVNWLK 62
           K TRRL++EE +Q  LYILK C+ V P+I +H + L+  +P+N Q +HD+EF +W +
Sbjct: 191 KVTRRLSLEEIKQAHLYILKNCDQVTPFIYKHKEILEEENPRNVQKRHDQEFSDWFE 247

[Close]

BLAST of CcUC02G025220 vs. ExPASy TrEMBL
Match: A0A6P5NRP6 (uncharacterized protein LOC107489344 OS=Arachis duranensis OX=130453 GN=LOC107489344 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.8e-07
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 5   KQTRRLTIEEWRQVRLYILKKCESVLPYISEHIQGLQHLDPKNAQSKHDKEFVNWLK 62
           K TRRL++EE +Q  LYILK C+ V P+I +H + L+  +P+N Q +HD+EF +W +
Sbjct: 849 KVTRRLSLEEIKQAHLYILKNCDQVTPFIYKHKEILEEENPRNVQKRHDQEFSDWFE 905

[Close]

BLAST of CcUC02G025220 vs. ExPASy TrEMBL
Match: A0A6P5MAM6 (uncharacterized protein LOC107458264 OS=Arachis duranensis OX=130453 GN=LOC107458264 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.5e-07
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 5   KQTRRLTIEEWRQVRLYILKKCESVLPYISEHIQGLQHLDPKNAQSKHDKEFVNWLK 62
           K TRRL++EE +Q  LYILK C+ V P+I +H + L+  +P+N Q  HD+EF NW +
Sbjct: 250 KVTRRLSLEEIKQSHLYILKNCDQVTPFICKHKEILEKENPRNVQKWHDQEFSNWFE 306

The following BLAST results are available for this feature:

BLAST of CcUC02G025220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_025646460.1	2.1e-07	49.12	uncharacterized protein LOC112741639 [Arachis hypogaea] >XP_025646471.1 uncharac...	[more]
XP_029145441.1	6.0e-07	47.37	uncharacterized protein LOC112715238 isoform X3 [Arachis hypogaea]	[more]
XP_029145439.1	6.0e-07	47.37	uncharacterized protein LOC112715238 isoform X1 [Arachis hypogaea]	[more]
XP_029145440.1	6.0e-07	47.37	uncharacterized protein LOC112715238 isoform X2 [Arachis hypogaea]	[more]
XP_020989473.1	7.9e-07	47.37	uncharacterized protein LOC107470678 isoform X2 [Arachis duranensis]	[more]

BLAST of CcUC02G025220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G025220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P5N323	3.8e-07	47.37	uncharacterized protein LOC107470678 isoform X2 OS=Arachis duranensis OX=130453 ...	[more]
A0A6P5NRP6	3.8e-07	47.37	uncharacterized protein LOC107489344 OS=Arachis duranensis OX=130453 GN=LOC10748...	[more]
A0A6P5MAM6	6.5e-07	49.12	uncharacterized protein LOC107458264 OS=Arachis duranensis OX=130453 GN=LOC10745...	[more]

BLAST of CcUC02G025220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G025220.1	CcUC02G025220.1	mRNA