CcUC02G024640 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G024640
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Tubulin alpha-1B chain
Location	CicolChr02: 8163269 .. 8165166 (-)
RNA-Seq Expression	CcUC02G024640
Synteny	CcUC02G024640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTATGCGAGAGAACACCTCCGCTACGCTGGTCGAGTTGGAGATCATACACACTGCCCTCTGCACCTTGGCAAGGTCACCGCCCGGAACCACCGTTGGCGGCTGGTAGTTAATGCCACACTTGAAACCAGTGGGGCACCAATCCACGAACTGGATCGTGCGCTTGGTTTTGATGGTTGCAACAGCGGCATTGACATCCTTCGGCACAACGTCTCCTCGATACATCAGACAGCAAGCCATGTACTTCCCATGGCGGGGATCGCACTTGGCCATCATGGAAGATGGCTCGAATGCGCTGTTGGTGATCTCCGCTACAGAGAGCTGTTCATGGTAGGCCTTCTCTGCCGAGATCACAGGGGCATAGGAGGAAAGCATGAAGTGGATTCTTGGGTAAGGGACTAAATTCGTTTGGAACTCAGTGACATCTACATTCAGAGCTCCATCGAACCGTAGAGAGGCTGTCAAGGACGAAATCACCTGAACATCATATCAAAGAAACAGTAGTCCATGATAAAAATTTGTTAGATTAGTCAAGTTCATCATTTGAAAGTAAAGGTACTAAAAATTAAAGATCAAAATGATATTTTAACCAATTTGTCACCACAACATTCAAGAAAATGAAAGGCCGTTAAAATGTACCTGAGAGATGAGACGGTTGAGGTTTGTGTATGTTGGTCGCTCAATGTCAAGGGAGCGTCTACAAATGTCATAAATGGCCTCATTGTCAAGAAGCACAGAAACATCTGTATGTTCAAGGAGGGAATGGGTTGAAAGAACACTGTTGTAAGGTTCAACAACAGAGGTGGAAACTTGTGGAGAGGGATAAACAGTGAAACCAAGCTTTGATTTCTTGCCATAGTCAACAGACAAACGCTCCAAAAGGAGGGAGCCAAGACCAGATCCAGTACCCCCACCAACAGCGTTAAACACCAGGAAGCCTTGAAGTCCAGTGCAGTTGTCAGCGAGCTTTCTAATGCGATCCAAACAGAGATCAACAATCTCCTTGCCAACTGAAACACAAGTTTTTCCAATTATCATTACACAGTTCATGAAAAAACACCATGGTATACGTTCAAAATATTGATTGAATTAGCTTATACGAATGTGACAATTTGAGATGCTTACTGGTGTAATGGCCACGAGCAAAGTTGTTGGCAGCATCTTCTTTGCCGCTGATTAGCTGTTCAGGATGGAACAATTGGCGATACATTCCAGTCCTCACCTCATCGATGACAGTAGGCTCGAGATCAACAAAAACAGCACGAGGAACATGCTTGCCTGCACCTGTTTCACTGAAGAAGGTGTTGAAGGCATCATCGCCTCCAGCTACAGTTGTGTCACTCGGCATTCGACCATCAGGCTGAAATACAGATGAAAAAATTTAGACAAGATGAAAATATCCCTCAACATGTCTGATATATCCATCTATATATATATTTATATGTCTATAAATCAAGGACATCTCCAACATTTTTTATAAATGCTCGTAAAACATGAAAAACGTCATCTACTTAGACTAATATAAATAGAAATATTAATAACAATATTCACAACTTAGTTTGGGAGAAAACAAAAAAAAAATCATCTAACTAAAATTTATAAATTTAGCGACTTATAAGAACTATATGTTGATAATCAATATTTTATATTTTCATATTGATATAAACATTGAAATTTTATCCTTGGACAGCATGAAACTCAAATTTGGAATTCATTACAATTCTCGTGGAAAAAAGAAAAAGAATAAACATTCGCGCACTTGAATTGAATTCCATACCCACATATAATCATTTCAGTTCATTTTTTAATGACGTGAAAGTTCTAAAACTAGAAACTCTAATAAGAAACAGCTAACTATTTTCACAAATATCAATCAGATCTCAGTAGAATTATGA

mRNA sequence

ATGGTCTATGCGAGAGAACACCTCCGCTACGCTGGTCGAGTTGGAGATCATACACACTGCCCTCTGCACCTTGGCAAGGTCACCGCCCGGAACCACCGTTGGCGGCTGGTAGTTAATGCCACACTTGAAACCAGTGGGGCACCAATCCACGAACTGGATCGTGCGCTTGGTTTTGATGGTTGCAACAGCGGCATTGACATCCTTCGGCACAACGTCTCCTCGATACATCAGACAGCAAGCCATGTACTTCCCATGGCGGGGATCGCACTTGGCCATCATGGAAGATGGCTCGAATGCGCTGTTGGTGATCTCCGCTACAGAGAGCTGTTCATGGTAGGCCTTCTCTGCCGAGATCACAGGGGCATAGGAGGAAAGCATGAAGTGGATTCTTGGATCTCAGTAGAATTATGA

Coding sequence (CDS)

ATGGTCTATGCGAGAGAACACCTCCGCTACGCTGGTCGAGTTGGAGATCATACACACTGCCCTCTGCACCTTGGCAAGGTCACCGCCCGGAACCACCGTTGGCGGCTGGTAGTTAATGCCACACTTGAAACCAGTGGGGCACCAATCCACGAACTGGATCGTGCGCTTGGTTTTGATGGTTGCAACAGCGGCATTGACATCCTTCGGCACAACGTCTCCTCGATACATCAGACAGCAAGCCATGTACTTCCCATGGCGGGGATCGCACTTGGCCATCATGGAAGATGGCTCGAATGCGCTGTTGGTGATCTCCGCTACAGAGAGCTGTTCATGGTAGGCCTTCTCTGCCGAGATCACAGGGGCATAGGAGGAAAGCATGAAGTGGATTCTTGGATCTCAGTAGAATTATGA

Protein sequence

MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDILRHNVSSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHRGIGGKHEVDSWISVEL

Homology

[Close]

BLAST of CcUC02G024640 vs. NCBI nr
Match: OQS04464.1 (hypothetical protein THRCLA_03304 [Thraustotheca clavata])

HSP 1 Score: 147.5 bits (371), Expect = 8.3e-32
Identity = 66/132 (50.00%), Postives = 89/132 (67.42%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V  REH   +  VGDH    L   K+TA NH WR VV+ TLETS AP+H+L+  LG DG
Sbjct: 314 VVNTREHFSNSTGVGDHAASTLDTSKITAWNHGWRFVVDTTLETSRAPVHKLNGTLGLDG 373

Query: 61  CNSGIDILRHNVSSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            NS IDILR +++++HQT+SHV  MA I L HH + +E A+ D  +RELFMV L   +HR
Sbjct: 374 GNSSIDILRDDITTVHQTSSHVFTMAWITLSHHRKRIEAAICDFSHRELFMVSLFSTNHR 433

Query: 121 GIGGKHEVDSWI 133
            +  +HE+D+W+
Sbjct: 434 SVRAQHEMDTWV 445

[Close]

BLAST of CcUC02G024640 vs. NCBI nr
Match: CAD2221797.1 (hypothetical protein, conserved [Angomonas deanei])

HSP 1 Score: 138.3 bits (347), Expect = 5.0e-29
Identity = 67/136 (49.26%), Postives = 90/136 (66.18%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V A EHL     VG+H H  LHLG+VTAR+H   LVV+  LE  G P+ ELD AL  DG
Sbjct: 71  VVNAGEHLSDGSGVGNHAHGTLHLGEVTARDHGGGLVVDTALEAGGGPVDELDGALRLDG 130

Query: 61  CNSGIDILRHNVSSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            + G+D+L  +++++H+ A HVL +A +ALG H   LE  VGDL   ELF+VGLL  D  
Sbjct: 131 GDGGVDVLGDDITAVHEAARHVLTVARVALGEHASGLEDGVGDLGDGELFVVGLLGGDDG 190

Query: 121 GIGGKHEVDSWISVEL 137
           G+GG+HEVD+ +  E+
Sbjct: 191 GVGGEHEVDTGVGHEV 206

[Close]

BLAST of CcUC02G024640 vs. NCBI nr
Match: EPY42742.1 (hypothetical protein AGDE_01181 [Angomonas deanei] >EPY42926.1 hypothetical protein AGDE_00997 [Angomonas deanei])

HSP 1 Score: 138.3 bits (347), Expect = 5.0e-29
Identity = 67/136 (49.26%), Postives = 90/136 (66.18%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V A EHL     VG+H H  LHLG+VTAR+H   LVV+  LE  G P+ ELD AL  DG
Sbjct: 71  VVNAGEHLSDGSGVGNHAHGTLHLGEVTARDHGGGLVVDTALEAGGGPVDELDGALRLDG 130

Query: 61  CNSGIDILRHNVSSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            + G+D+L  +++++H+ A HVL +A +ALG H   LE  VGDL   ELF+VGLL  D  
Sbjct: 131 GDGGVDVLGDDITAVHEAARHVLTVARVALGEHASGLEDGVGDLGDGELFVVGLLGGDDG 190

Query: 121 GIGGKHEVDSWISVEL 137
           G+GG+HEVD+ +  E+
Sbjct: 191 GVGGEHEVDTGVGHEV 206

[Close]

BLAST of CcUC02G024640 vs. NCBI nr
Match: KAF3846725.1 (hypothetical protein F7725_003803, partial [Dissostichus mawsoni])

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-28
Identity = 63/130 (48.46%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V A   L   G V  H H PLHLG+V++RNH   LVV+A LE SG P+H+LD ALGFDG
Sbjct: 65  VVQASPGLCDGGGVAQHAHGPLHLGQVSSRNHGRGLVVDAHLEASGTPVHKLDGALGFDG 124

Query: 61  CNSGIDILRHNVSSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            +  +DI  H++ ++ + A HVL + G+A      WLE  VGD+ +R+L +VGLLC D+ 
Sbjct: 125 GDGRVDIFGHHIPTVQEAAGHVLAVTGVAFHQLVGWLETGVGDVSHRQLLVVGLLCGDNW 184

Query: 121 GIGGKHEVDS 131
           G+GG+ EVD+
Sbjct: 185 GVGGQREVDT 194

[Close]

BLAST of CcUC02G024640 vs. NCBI nr
Match: ESS55048.1 (hypothetical protein TCDM_13504 [Trypanosoma cruzi Dm28c])

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-27
Identity = 66/119 (55.46%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V A EHLR  GRVG+H H  LHLGKV   +HR  LVV+A LE SG P+H+L+RAL  DG
Sbjct: 303 VVDACEHLRDGGRVGNHAHRALHLGKVATGHHRRGLVVDAALEASGRPVHKLNRALRLDG 362

Query: 61  CNSGIDILRHNVSSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDH 120
            +  + +LRHNV+++H+ A HVL +AG+AL HH R L+  V DLR  EL +V LL RDH
Sbjct: 363 RDGSVHVLRHNVAAVHEAACHVLAVAGVALRHHRRRLKHRVRDLRNGELLVVCLLRRDH 421

[Close]

BLAST of CcUC02G024640 vs. ExPASy TrEMBL
Match: A0A1W0A2F7 (Uncharacterized protein OS=Thraustotheca clavata OX=74557 GN=THRCLA_03304 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.0e-32
Identity = 66/132 (50.00%), Postives = 89/132 (67.42%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V  REH   +  VGDH    L   K+TA NH WR VV+ TLETS AP+H+L+  LG DG
Sbjct: 314 VVNTREHFSNSTGVGDHAASTLDTSKITAWNHGWRFVVDTTLETSRAPVHKLNGTLGLDG 373

Query: 61  CNSGIDILRHNVSSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            NS IDILR +++++HQT+SHV  MA I L HH + +E A+ D  +RELFMV L   +HR
Sbjct: 374 GNSSIDILRDDITTVHQTSSHVFTMAWITLSHHRKRIEAAICDFSHRELFMVSLFSTNHR 433

Query: 121 GIGGKHEVDSWI 133
            +  +HE+D+W+
Sbjct: 434 SVRAQHEMDTWV 445

[Close]

BLAST of CcUC02G024640 vs. ExPASy TrEMBL
Match: K3X1R8 (Uncharacterized protein OS=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) OX=431595 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.6e-31
Identity = 67/132 (50.76%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V AREH     RV DH H  LH  K+TA  + WRLVV+  LET  AP+HELDRALG D 
Sbjct: 60  VVDAREHFSDGRRVRDHAHGTLHASKITAWYNSWRLVVDTALETRWAPVHELDRALGLDR 119

Query: 61  CNSGIDILRHNVSSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            N  I IL H+++++H+T  HVL +A + LGHH  W + AVGD   R+L +V LL RDH 
Sbjct: 120 GNRSIHILWHDITTVHETRGHVLAVAWVTLGHHRGWFKDAVGDFSDRQLLVVRLLSRDHW 179

Query: 121 GIGGKHEVDSWI 133
            +  +HEVD+W+
Sbjct: 180 RVRAQHEVDTWV 191

[Close]

BLAST of CcUC02G024640 vs. ExPASy TrEMBL
Match: A0A803JI81 (Tubulin alpha 1c like, gene 2 OS=Xenopus tropicalis OX=8364 GN=tuba1cl.2 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.4e-30
Identity = 61/136 (44.85%), Postives = 85/136 (62.50%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           ++ A   L   G V  H H  L+LG++  RN  W LVV+  LETS AP+H+LD   G D 
Sbjct: 64  VIQASPGLSNGGGVAQHAHSSLYLGQIPTRNRCWGLVVDTNLETSWAPVHKLDGTFGLDS 123

Query: 61  CNSGIDILRHNVSSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            NS IDI  H+++++ Q  SHV  M G+   H   WL+ ++GDL YREL MV  LCRD+R
Sbjct: 124 SNSSIDIFGHHITAVQQATSHVFTMTGVTFHHLIGWLKASIGDLGYRELLMVSFLCRDNR 183

Query: 121 GIGGKHEVDSWISVEL 137
           GIGG+ E+D+ +  ++
Sbjct: 184 GIGGQREMDTGVGYQV 199

[Close]

BLAST of CcUC02G024640 vs. ExPASy TrEMBL
Match: A0A4W2I559 (Tubulin alpha-1B chain OS=Bos indicus x Bos taurus OX=30522 GN=TUBA1A PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.4e-29
Identity = 66/132 (50.00%), Postives = 87/132 (65.91%), Query Frame = 0


Query: 1   MVYAREHLRYAGRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDG 60
           +V AR  L  +  V  H H  L+ G+V+AR H  RLVVNA LE SGAP+H+LD  LG DG
Sbjct: 59  VVQARPGLSNSCGVAQHAHSSLYFGQVSARYHSGRLVVNANLEASGAPVHKLDGTLGLDG 118

Query: 61  CNSGIDILRHNVSSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHR 120
            N  IDI  ++++++ Q A HV PMA +   H   WL+ ++GDL YR+LFMVG L RD R
Sbjct: 119 GNGSIDIFGNHITTVQQAAGHVFPMARVTFHHLVGWLKASIGDLCYRKLFMVGFLSRDDR 178

Query: 121 GIGGKHEVDSWI 133
           G+ G+ EVD+ I
Sbjct: 179 GVCGQREVDAGI 190

[Close]

BLAST of CcUC02G024640 vs. ExPASy TrEMBL
Match: A0A023G3K8 (Putative alpha tubulin (Fragment) OS=Amblyomma triste OX=251400 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-29
Identity = 64/121 (52.89%), Postives = 86/121 (71.07%), Query Frame = 0


Query: 12  GRVGDHTHCPLHLGKVTARNHRWRLVVNATLETSGAPIHELDRALGFDGCNSGIDILRHN 71
           G V  H H  L+LG+VT RN+  RLVV++ LETS AP+++LD ALG DGCNS +DIL H+
Sbjct: 73  GGVRQHAHSTLYLGQVTTRNNSGRLVVDSNLETSWAPVNKLDGALGLDGCNSCVDILWHH 132

Query: 72  VSSIHQTASHVLPMAGIALGHHGRWLECAVGDLRYRELFMVGLLCRDHRGIGGKHEVDSW 131
           ++++ +TA HVLPM GI L H    L+  +GDL Y +L +VGLL RDH  +  K EVD+W
Sbjct: 133 ITTVQETAGHVLPMTGITLDHLVGRLKAGIGDLCYCQLLVVGLLSRDHWSVCHKREVDAW 192

Query: 132 I 133
           +
Sbjct: 193 V 193

The following BLAST results are available for this feature:

BLAST of CcUC02G024640 vs. NCBI nr


Match Name	E-value	Identity	Description
OQS04464.1	8.3e-32	50.00	hypothetical protein THRCLA_03304 [Thraustotheca clavata]	[more]
CAD2221797.1	5.0e-29	49.26	hypothetical protein, conserved [Angomonas deanei]	[more]
EPY42742.1	5.0e-29	49.26	hypothetical protein AGDE_01181 [Angomonas deanei] >EPY42926.1 hypothetical prot...	[more]
KAF3846725.1	2.5e-28	48.46	hypothetical protein F7725_003803, partial [Dissostichus mawsoni]	[more]
ESS55048.1	1.2e-27	55.46	hypothetical protein TCDM_13504 [Trypanosoma cruzi Dm28c]	[more]

BLAST of CcUC02G024640 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G024640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1W0A2F7	4.0e-32	50.00	Uncharacterized protein OS=Thraustotheca clavata OX=74557 GN=THRCLA_03304 PE=4 S...	[more]
K3X1R8	2.6e-31	50.76	Uncharacterized protein OS=Globisporangium ultimum (strain ATCC 200006 / CBS 805...	[more]
A0A803JI81	6.4e-30	44.85	Tubulin alpha 1c like, gene 2 OS=Xenopus tropicalis OX=8364 GN=tuba1cl.2 PE=4 SV...	[more]
A0A4W2I559	1.4e-29	50.00	Tubulin alpha-1B chain OS=Bos indicus x Bos taurus OX=30522 GN=TUBA1A PE=3 SV=1	[more]
A0A023G3K8	2.4e-29	52.89	Putative alpha tubulin (Fragment) OS=Amblyomma triste OX=251400 PE=2 SV=1	[more]

BLAST of CcUC02G024640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36527	OS01G0282866 PROTEIN	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G024640.1	CcUC02G024640.1	mRNA