CcUC02G024240 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC02G024240
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionSWIB domain-containing protein
LocationCicolChr02: 7609944 .. 7612216 (-)
RNA-Seq ExpressionCcUC02G024240
SyntenyCcUC02G024240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATCGTATTAAATCCATTGAACCTGAATGGATTAACGCGCGTTCAGAAATTGGAGCTTCTCGAGTTATCGGTCTTACCGCTTCACCTTCGCTTTATCCATTTTTCGAACGCAAAAACACAACCTATCGTCACTTCCGGCCATGGCTTTCGTCTCCACCTTCATCTCCGGCGAACCGCCCCTCCTTGTCGCCATAGCCTTCCCCACCGCCTCCTCTGTCAAGCATCCCTGTCAACTGCCTCTGCCTAATTTGCGCTTCGCCCGCACCGTCACCTTCGCTTCCGCCTCCAACCAAGCCACTGCCTCCCGCCGGCAGCCCCGTGGCATCATGAAGCCCCGTAGAGTTTCGCCGGAGATGCAGGCGCTTGTCGGCGCTCCTGAGATTTCCCGCACCCAAGCCCTGAAGGTCATTTGGGCTCACATTAAAGAACATAATCTTCAGGTAGAATCTCTCTTCCTCTGTCGTCTTTCGTTTCTCTTTTTCCTTCCATTTTGTTTCCCTTTCATTCGTCTGTCACTGTTACTAGTTAATTTGAGAATAGGCTTTTCTGTGATTCTTTTTTTCCCCTCGAGTTTTTGGGAATTTCTTACTATGTTCTTTCTGGCATGCGCTGTAATGATCATTAGATTATGTTTCTTCAACTCTTTATGCTTTGTTTTGAATATTTTTAGATGTGGCCTTTTTTATTAGCGAAGTTTGTATGTTTAGGAGATTTTTGCTGTGAGTTGTTGGGTTCTGAGGAGGTTGTATGTGAAGTTTGTTTTGAAGATTTTTGTTCTGAAATGAGGGTTTTGGATTGTTGATCTTTGAAACTTTCTTACTGTATTCTTGTTAGATTGTGCTTTAATGATCATTGGATGAATCGGTTTAGATGTGGCATGTGATGTGGTTATTGAGTTTGAGGCTTTTAAGATATCTGAAGAGGTTTTCCTAGTTAACTCTTTTCTGAGTTGTGCATTTGTTTTCAAAGACTTGGAACAGTTCTAGAAAAACTTATGTTCATTTTTTGGTTTTCAAATATATCAAAGATTGAATCCAACCATTTCATTGATGTTTTATGAACGTAAATACCTTCTATTTGGATAAGATATACATCATCTAAAATTTAAATTTGCTAAAGGTTCTAATTATAGCATCTCTTTGTGTGCTCACCATACACTCTCATTGCATCGTTTTTACACAAATTTCTGTACAAGCATTCTCATTGTCTCTATAGTTTCTTAGTCTCTCTGTTTCACTCTCTAGGCATTTCTTCTTATTTGCTCTCTTCATAAACCCTCTCCCACTTTCTCATCGGATTCTTACCGTTCTTTATTCCTTTCCACATTCTCATCGGATTCTTACCGTTCTTTATTCCTTTCCACATTTCTATCCCTAATTGAGTTCTCCATTATGTATTTACCTTTCGATCTAACTCGATAATGTTATGGTATTTCTTCTTGGAACAGCTGTCTGGGGTTCCTCGGCATGTTTATCAGCCCTTGCTCTTGTGATTTTGATAACTAAGGATTATGGGAATCCTATATTCACTTGAGTTCCTTGAGTTCTCTTACATTACTCCATTAAACTTGTGCTTTCTTTGGCTAAATACTGCCTGGTGTTTCACAAAAGAACAAAAAATTGGTATGATAGTTGCCTTCTTAAAAATCAGTGGTTTGAAGCACAGAACCCGAAGTCAAGTTTATTTGTTTTGTTTCTGATTATATTCTTTCTTTTCTTTGCTTATTTATTTATTTATTTTAATAATTATATTCTTCATTCTTTTAGAAACCTAGCGACAAGAAAGTCATAATTTGTGACGAGAAGCTGAAGAATATATTTGGAGGGAAAGATGAAGTTGGATTTCTGGAGATTGCAGGGTTAATAAGTCCACACTTTCTATAATGATTTGAAGAATGGAAGATAGGCATCTGGGACCTTCAGTTCAGTCCATGAAGATGAACTTTCTTTTTTTTTTTTTTTTTTTTTTTGTGAGACTCTCTCAACTCAGGTATTGCTCACTGAATCCTGTAGTTCAGAGCCCACTTTATGTTTAGTAGTTGGATAGAGAGAAAGAAGGCTTTGTAAGAACTTTGTTTGGAGGTTTATGTAGGGATTGTTATATGGAAATCTTTGGCTAGTAGTTATTAGTTTTTGGGTAAAATGTCTCACTTTTGTATTCGACCTGCTTGATTTTTGTGCTTCTATTTGCCCTGGTCTTGATGATTTTAGCTGTTGTTAATGAAATTGTATGATTTCAACACTATCCATAAAGCTACTTCGTCTTTTTG

mRNA sequence

ATGGTATCAAATTGGAGCTTCTCGAGTTATCGGTCTTACCGCTTCACCTTCGCTTTATCCATTTTTCGAACGCAAAAACACAACCTATCGTCACTTCCGGCCATGGCTTTCGTCTCCACCTTCATCTCCGGCGAACCGCCCCTCCTTGTCGCCATAGCCTTCCCCACCGCCTCCTCTGTCAAGCATCCCTGTCAACTGCCTCTGCCTAATTTGCGCTTCGCCCGCACCGTCACCTTCGCTTCCGCCTCCAACCAAGCCACTGCCTCCCGCCGGCAGCCCCGTGGCATCATGAAGCCCCGTAGAGTTTCGCCGGAGATGCAGGCGCTTGTCGGCGCTCCTGAGATTTCCCGCACCCAAGCCCTGAAGGTCATTTGGGCTCACATTAAAGAACATAATCTTCAGAAACCTAGCGACAAGAAAGTCATAATTTGTGACGAGAAGCTGAAGAATATATTTGGAGGGAAAGATGAAGTTGGATTTCTGGAGATTGCAGGGTTAATAAGTCCACACTTTCTATAATGATTTGAAGAATGGAAGATAGGCATCTGGGACCTTCAGTTCAGTCCATGAAGATGAACTTTCTTTTTTTTTTTTTTTTTTTTTTTGTGAGACTCTCTCAACTCAGGTATTGCTCACTGAATCCTGTAGTTCAGAGCCCACTTTATGTTTAGTAGTTGGATAGAGAGAAAGAAGGCTTTGTAAGAACTTTGTTTGGAGGTTTATGTAGGGATTGTTATATGGAAATCTTTGGCTAGTAGTTATTAGTTTTTGGGTAAAATGTCTCACTTTTGTATTCGACCTGCTTGATTTTTGTGCTTCTATTTGCCCTGGTCTTGATGATTTTAGCTGTTGTTAATGAAATTGTATGATTTCAACACTATCCATAAAGCTACTTCGTCTTTTTG

Coding sequence (CDS)

ATGGTATCAAATTGGAGCTTCTCGAGTTATCGGTCTTACCGCTTCACCTTCGCTTTATCCATTTTTCGAACGCAAAAACACAACCTATCGTCACTTCCGGCCATGGCTTTCGTCTCCACCTTCATCTCCGGCGAACCGCCCCTCCTTGTCGCCATAGCCTTCCCCACCGCCTCCTCTGTCAAGCATCCCTGTCAACTGCCTCTGCCTAATTTGCGCTTCGCCCGCACCGTCACCTTCGCTTCCGCCTCCAACCAAGCCACTGCCTCCCGCCGGCAGCCCCGTGGCATCATGAAGCCCCGTAGAGTTTCGCCGGAGATGCAGGCGCTTGTCGGCGCTCCTGAGATTTCCCGCACCCAAGCCCTGAAGGTCATTTGGGCTCACATTAAAGAACATAATCTTCAGAAACCTAGCGACAAGAAAGTCATAATTTGTGACGAGAAGCTGAAGAATATATTTGGAGGGAAAGATGAAGTTGGATTTCTGGAGATTGCAGGGTTAATAAGTCCACACTTTCTATAA

Protein sequence

MVSNWSFSSYRSYRFTFALSIFRTQKHNLSSLPAMAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
Homology
BLAST of CcUC02G024240 vs. NCBI nr
Match: XP_038888173.1 (uncharacterized protein LOC120078055 isoform X1 [Benincasa hispida])

HSP 1 Score: 247.7 bits (631), Expect = 7.4e-62
Identity = 127/138 (92.03%), Postives = 130/138 (94.20%), Query Frame = 0

Query: 35  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPR 94
           MAF+STFISGEP LLV  A  TA+SVK P QLPLPNLRFARTVTFASASNQATAS RQPR
Sbjct: 1   MAFLSTFISGEPSLLVVKASATATSVKQPYQLPLPNLRFARTVTFASASNQATASHRQPR 60

Query: 95  GIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 154
           GIMKPRR+SPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120

Query: 155 KDEVGFLEIAGLISPHFL 173
           KDEVGFLEIAGLISPHFL
Sbjct: 121 KDEVGFLEIAGLISPHFL 138

BLAST of CcUC02G024240 vs. NCBI nr
Match: XP_022952608.1 (uncharacterized protein LOC111455244 [Cucurbita moschata])

HSP 1 Score: 238.8 bits (608), Expect = 3.5e-59
Identity = 120/138 (86.96%), Postives = 126/138 (91.30%), Query Frame = 0

Query: 35  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPR 94
           MAFVSTF+SGEP LLVA A    SSVKHP QLPLPNLRF+RT+TFASASNQ TAS RQPR
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60

Query: 95  GIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 154
           GIMKPRR+SPEMQALVGAPEISRT+ALKVIW HIKEHNLQKPSDKK+IICDEKLK IFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120

Query: 155 KDEVGFLEIAGLISPHFL 173
           KDEVGFLEIAGLIS HFL
Sbjct: 121 KDEVGFLEIAGLISSHFL 138

BLAST of CcUC02G024240 vs. NCBI nr
Match: XP_023553864.1 (uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.8 bits (608), Expect = 3.5e-59
Identity = 120/138 (86.96%), Postives = 126/138 (91.30%), Query Frame = 0

Query: 35  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPR 94
           MAFVSTF+SGEP LLVA A    SSVKHP QLPLPNLRF+RT+TFASASNQ TAS RQPR
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60

Query: 95  GIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 154
           GIMKPRR+SPEMQALVGAPEISRTQALKVIW HIKEHNLQKP+DKK+IICDEKLK IFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWTHIKEHNLQKPNDKKIIICDEKLKKIFGG 120

Query: 155 KDEVGFLEIAGLISPHFL 173
           KDEVGFLEIAGLIS HFL
Sbjct: 121 KDEVGFLEIAGLISSHFL 138

BLAST of CcUC02G024240 vs. NCBI nr
Match: KAG6571933.1 (hypothetical protein SDJN03_28661, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011621.1 TRI1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237.7 bits (605), Expect = 7.7e-59
Identity = 119/138 (86.23%), Postives = 126/138 (91.30%), Query Frame = 0

Query: 35  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPR 94
           MAFVSTF+SGEP LLVA A    SSVKHP QLPLPNLRF+RT+TFASASNQ TAS RQPR
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60

Query: 95  GIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 154
           GIMKPRR+SPEMQALVGAPEISRT+ALKVIW HIKEHNLQKPSDKK+I+CDEKLK IFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120

Query: 155 KDEVGFLEIAGLISPHFL 173
           KDEVGFLEIAGLIS HFL
Sbjct: 121 KDEVGFLEIAGLISSHFL 138

BLAST of CcUC02G024240 vs. NCBI nr
Match: XP_022972543.1 (uncharacterized protein LOC111471082 [Cucurbita maxima])

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-58
Identity = 120/138 (86.96%), Postives = 127/138 (92.03%), Query Frame = 0

Query: 35  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPR 94
           MAFVSTF+SGE  LL+A A    SSVKHP QLPLPNLRF+RT+TFASASNQATAS RQPR
Sbjct: 1   MAFVSTFVSGELSLLLARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQATASSRQPR 60

Query: 95  GIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 154
           GIMKPRR+SPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKK+I+CDEKLK IFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120

Query: 155 KDEVGFLEIAGLISPHFL 173
           KDEVGFLEIAGLIS HFL
Sbjct: 121 KDEVGFLEIAGLISSHFL 138

BLAST of CcUC02G024240 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.9e-10
Identity = 27/54 (50.00%), Postives = 41/54 (75.93%), Query Frame = 0

Query: 102 VSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGK 156
           +S  +Q  +G+ E+ RTQ +K+IW +IKEH+LQ P D++ I+CDEK++ IFG K
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKK 179

BLAST of CcUC02G024240 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.0e-10
Identity = 25/55 (45.45%), Postives = 42/55 (76.36%), Query Frame = 0

Query: 98  KPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIF 153
           KP ++SP++   +G  ++SR Q +K +W +IK H+LQ P+DK+ I+CD+KLK++F
Sbjct: 119 KPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVF 173

BLAST of CcUC02G024240 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-08
Identity = 25/52 (48.08%), Postives = 40/52 (76.92%), Query Frame = 0

Query: 102 VSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFG 154
           +S  + +L+G  E++RT+ ++ +WA+IK HNLQ P++KK I+CDEKL+ I G
Sbjct: 126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG 177

BLAST of CcUC02G024240 vs. ExPASy TrEMBL
Match: A0A6J1GL33 (uncharacterized protein LOC111455244 OS=Cucurbita moschata OX=3662 GN=LOC111455244 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.7e-59
Identity = 120/138 (86.96%), Postives = 126/138 (91.30%), Query Frame = 0

Query: 35  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPR 94
           MAFVSTF+SGEP LLVA A    SSVKHP QLPLPNLRF+RT+TFASASNQ TAS RQPR
Sbjct: 1   MAFVSTFVSGEPSLLVARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQTTASSRQPR 60

Query: 95  GIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 154
           GIMKPRR+SPEMQALVGAPEISRT+ALKVIW HIKEHNLQKPSDKK+IICDEKLK IFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTEALKVIWTHIKEHNLQKPSDKKIIICDEKLKKIFGG 120

Query: 155 KDEVGFLEIAGLISPHFL 173
           KDEVGFLEIAGLIS HFL
Sbjct: 121 KDEVGFLEIAGLISSHFL 138

BLAST of CcUC02G024240 vs. ExPASy TrEMBL
Match: A0A6J1IAA1 (uncharacterized protein LOC111471082 OS=Cucurbita maxima OX=3661 GN=LOC111471082 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 6.4e-59
Identity = 120/138 (86.96%), Postives = 127/138 (92.03%), Query Frame = 0

Query: 35  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPR 94
           MAFVSTF+SGE  LL+A A    SSVKHP QLPLPNLRF+RT+TFASASNQATAS RQPR
Sbjct: 1   MAFVSTFVSGELSLLLARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQATASSRQPR 60

Query: 95  GIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 154
           GIMKPRR+SPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKK+I+CDEKLK IFGG
Sbjct: 61  GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGG 120

Query: 155 KDEVGFLEIAGLISPHFL 173
           KDEVGFLEIAGLIS HFL
Sbjct: 121 KDEVGFLEIAGLISSHFL 138

BLAST of CcUC02G024240 vs. ExPASy TrEMBL
Match: A0A6J1JNZ3 (uncharacterized protein LOC111486197 OS=Cucurbita maxima OX=3661 GN=LOC111486197 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 7.0e-58
Identity = 120/138 (86.96%), Postives = 124/138 (89.86%), Query Frame = 0

Query: 35  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPR 94
           MAFVSTFISGE  LL   A  T+SSVKHP Q P  NL FARTVTFAS SNQATAS+RQPR
Sbjct: 1   MAFVSTFISGELSLLTVRASATSSSVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPR 60

Query: 95  GIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 154
           GIMKP+R+SPEMQALVG PEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG
Sbjct: 61  GIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120

Query: 155 KDEVGFLEIAGLISPHFL 173
           KDEVGFLEIAGLISPHFL
Sbjct: 121 KDEVGFLEIAGLISPHFL 138

BLAST of CcUC02G024240 vs. ExPASy TrEMBL
Match: A0A6J1EIX1 (uncharacterized protein LOC111434699 OS=Cucurbita moschata OX=3662 GN=LOC111434699 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.2e-57
Identity = 120/138 (86.96%), Postives = 123/138 (89.13%), Query Frame = 0

Query: 35  MAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATASRRQPR 94
           MAFVSTFISGE  LL   A  T SSVKHP Q P  NL FARTVTFAS SNQATAS+RQPR
Sbjct: 1   MAFVSTFISGELSLLTVRASATPSSVKHPYQFPPSNLHFARTVTFASTSNQATASQRQPR 60

Query: 95  GIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 154
           GIMKP+R+SPEMQALVG PEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG
Sbjct: 61  GIMKPKRISPEMQALVGVPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGG 120

Query: 155 KDEVGFLEIAGLISPHFL 173
           KDEVGFLEIAGLISPHFL
Sbjct: 121 KDEVGFLEIAGLISPHFL 138

BLAST of CcUC02G024240 vs. ExPASy TrEMBL
Match: A0A6J1D4Q4 (uncharacterized protein LOC111017291 OS=Momordica charantia OX=3673 GN=LOC111017291 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.1e-55
Identity = 125/171 (73.10%), Postives = 140/171 (81.87%), Query Frame = 0

Query: 3   SNWSFSSYRSYRF-TFALSIFRTQKHNLSSLPAMAFVSTFISGEPPLLVAIAFPTASSVK 62
           S +  S  RS+RF TFALS+  T   +L    AMAFVSTF SGEP LLVA A  +ASS+K
Sbjct: 7   SEFRTSRSRSHRFCTFALSVRVTSPQSL----AMAFVSTFFSGEPALLVARA--SASSLK 66

Query: 63  HPCQLPLPNLRFARTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQAL 122
           H  QLP  NLRF R VTFA+AS+QATASRR+PRGIMKPR +SPEMQALVG PEISRTQAL
Sbjct: 67  HAPQLPPANLRFVRPVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQAL 126

Query: 123 KVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL 173
           KVIW HIKEHNLQ+P +KK+I+CDEKLK IFGGKDEVGFL+IAGLISPHFL
Sbjct: 127 KVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL 171

BLAST of CcUC02G024240 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 136.0 bits (341), Expect = 2.9e-32
Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 0

Query: 67  PLPNLRFARTVTFASASNQATA-SRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIW 126
           P   LR  R VT A+ S++ TA ++R PRGIMKPR VSPEMQ +V  PEI+RTQALK IW
Sbjct: 35  PAAKLRLVRAVTSATESSEPTATNKRVPRGIMKPRPVSPEMQDIVELPEIARTQALKRIW 94

Query: 127 AHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL 173
           A+IKEH+LQ P +K+ I+CDEKLK IF G+D VGFLEIA LI PHFL
Sbjct: 95  AYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHFL 141

BLAST of CcUC02G024240 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-31
Identity = 74/126 (58.73%), Postives = 86/126 (68.25%), Query Frame = 0

Query: 55  PTASSVKHPCQLPL-----PNLRFARTVTFASASNQ---ATASRRQPRGIMKPRRVSPEM 114
           P  SS+  P  L L      NLR  R VT A+A++     T   R+PRGIMKPR VS  M
Sbjct: 19  PLRSSMLSPSSLRLSPNHPTNLRMVRAVTSAAAASSDPTTTTKTREPRGIMKPRPVSQAM 78

Query: 115 QALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGL 173
           Q +VG PEI RTQALK IWA+IKEH+LQ P +K+ I+CDEKLK IF GK+ VGFLEIA L
Sbjct: 79  QDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAKL 138

BLAST of CcUC02G024240 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-20
Identity = 60/144 (41.67%), Postives = 79/144 (54.86%), Query Frame = 0

Query: 29  LSSLPAMAFVSTFISGEPPLLVAIAFPTASSVKHPCQLPLPNLRFARTVTFASASNQATA 88
           +SS+ AM F        P      +  +A S K P   P      A+    A + + A  
Sbjct: 1   MSSVAAMVFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAK---AKPKPKAKSDSPAKK 60

Query: 89  SRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKL 148
           + R   GI K   VSP +   +G  E SRT A+K IW +IK H+LQ P+DK+ I CDE L
Sbjct: 61  TPRS-TGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETL 120

Query: 149 KNIFGGKDEVGFLEIAGLISPHFL 173
           K IF GKD+VGFLEI+ L+SPHF+
Sbjct: 121 KLIFEGKDKVGFLEISKLLSPHFV 140

BLAST of CcUC02G024240 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 3.7e-19
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 0

Query: 75  RTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ 134
           RT+   +A+ +A     + +GI K R VS ++ +  G  E++R  ALK +W ++K HNLQ
Sbjct: 12  RTLMSKAATVEAVTVAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQ 71

Query: 135 KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHF 172
            P++KK I CD+KLK IF GKD+VG  EI  L+SPHF
Sbjct: 72  NPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHF 108

BLAST of CcUC02G024240 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 8.3e-19
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 0

Query: 75  RTVTFASASNQATASRRQPRGIMKPRRVSPEMQALVGAPEISRTQALKVIWAHIKEHNLQ 134
           R +   +AS+    + RQ  GI+K   VS  +   +G  E+SRT A+K IW +IK +NLQ
Sbjct: 9   RVLMAKAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQ 68

Query: 135 KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHF 172
            P +K+ I+CDE+LK IF GKD VGFLEI+ L+S HF
Sbjct: 69  NPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHF 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038888173.17.4e-6292.03uncharacterized protein LOC120078055 isoform X1 [Benincasa hispida][more]
XP_022952608.13.5e-5986.96uncharacterized protein LOC111455244 [Cucurbita moschata][more]
XP_023553864.13.5e-5986.96uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo][more]
KAG6571933.17.7e-5986.23hypothetical protein SDJN03_28661, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022972543.11.3e-5886.96uncharacterized protein LOC111471082 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q050246.9e-1050.00Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ... [more]
O745039.0e-1045.45Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97... [more]
Q087472.9e-0848.08Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC... [more]
Match NameE-valueIdentityDescription
A0A6J1GL331.7e-5986.96uncharacterized protein LOC111455244 OS=Cucurbita moschata OX=3662 GN=LOC1114552... [more]
A0A6J1IAA16.4e-5986.96uncharacterized protein LOC111471082 OS=Cucurbita maxima OX=3661 GN=LOC111471082... [more]
A0A6J1JNZ37.0e-5886.96uncharacterized protein LOC111486197 OS=Cucurbita maxima OX=3661 GN=LOC111486197... [more]
A0A6J1EIX11.2e-5786.96uncharacterized protein LOC111434699 OS=Cucurbita moschata OX=3662 GN=LOC1114346... [more]
A0A6J1D4Q41.1e-5573.10uncharacterized protein LOC111017291 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
AT2G14880.12.9e-3265.42SWIB/MDM2 domain superfamily protein [more]
AT4G34290.12.5e-3158.73SWIB/MDM2 domain superfamily protein [more]
AT3G03590.14.4e-2041.67SWIB/MDM2 domain superfamily protein [more]
AT1G31760.13.7e-1946.39SWIB/MDM2 domain superfamily protein [more]
AT2G35605.18.3e-1948.45SWIB/MDM2 domain superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019835SWIB domainSMARTSM00151swib_2coord: 96..172
e-value: 9.6E-29
score: 111.5
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 98..171
e-value: 1.2E-27
score: 95.5
IPR003121SWIB/MDM2 domainPROSITEPS51925SWIB_MDM2coord: 95..172
score: 20.512083
IPR036885SWIB/MDM2 domain superfamilyGENE3D1.10.245.10SWIB/MDM2 domaincoord: 90..172
e-value: 2.8E-25
score: 90.0
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 89..171
NoneNo IPR availablePANTHERPTHR13844SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY Dcoord: 56..172
NoneNo IPR availablePANTHERPTHR13844:SF8EXPRESSED PROTEIN-RELATEDcoord: 56..172
NoneNo IPR availableCDDcd10567SWIB-MDM2_likecoord: 100..171
e-value: 3.78346E-36
score: 118.415

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC02G024240.1CcUC02G024240.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus