CcUC02G023660 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G023660
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Cytochrome c oxidase subunit 3
Location	CicolChr02: 6610370 .. 6610692 (+)
RNA-Seq Expression	CcUC02G023660
Synteny	CcUC02G023660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGAAAGAAAATGAGACCCAAAAGAGCCCCTTCTTTTACCATTTTAGCGGGTGGAGGTGAAGGGGGGTTTACATACAACCGAGGCAAAGTGGTTTATGATTAAATCTAAGAAGCATTCTTATCATTTGGTAGATCCAAGTCCATGGCCCATTTCGGGTTCACTCGGAGCTTTGGCAACCACCGTAGGAGGTGTGATGTACATGCACTCATTTCAAGGGGTGCAACACTTCTAAGTTTGGGCTTCATATTTATCCTATATACCATGTTCGTATGGTGGCTCGATGTTCTACGTGAATCTTTCAATTGGTTAGAATTCGTTACT

mRNA sequence

ATAGAAAGAAAATGAGACCCAAAAGAGCCCCTTCTTTTACCATTTTAGCGGGTGGAGGTGAAGGGGGATCCAAGTCCATGGCCCATTTCGGGTTCACTCGGAGCTTTGGCAACCACCGTAGGAGGTGTGATGTACATGCACTCATTTCAAGGGGTGCAACACTTCTAAGTTTGGGCTTCATATTTATCCTATATACCATGTTCGTATGGTGGCTCGATGTTCTACGTGAATCTTTCAATTGGTTAGAATTCGTTACT

Coding sequence (CDS)

ATGAGACCCAAAAGAGCCCCTTCTTTTACCATTTTAGCGGGTGGAGGTGAAGGGGGATCCAAGTCCATGGCCCATTTCGGGTTCACTCGGAGCTTTGGCAACCACCGTAGGAGGTGTGATGTACATGCACTCATTTCAAGGGGTGCAACACTTCTAAGTTTGGGCTTCATATTTATCCTATATACCATGTTCGTATGGTGGCTCGATGTTCTACGTGAATCTTTCAATTGGTTAGAATTCGTTACT

Protein sequence

MRPKRAPSFTILAGGGEGGSKSMAHFGFTRSFGNHRRRCDVHALISRGATLLSLGFIFILYTMFVWWLDVLRESFNWLEFVT

Homology

[Close]

BLAST of CcUC02G023660 vs. NCBI nr
Match: GFP95426.1 (cytochrome c oxidase subunit 3 [Phtheirospermum japonicum])

HSP 1 Score: 100.5 bits (249), Expect = 7.0e-18
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 23 MAHFGFTRSFGNHRRRCDVHALISRGATLLSLGFIFILYTMFVWWLDVLRES 75
          MA+FGFTRSFGN+RRRCDVHALISRGATLLSLG IFILYTMFVWW DVLRES
Sbjct: 1  MAYFGFTRSFGNNRRRCDVHALISRGATLLSLGLIFILYTMFVWWRDVLRES 52

[Close]

BLAST of CcUC02G023660 vs. NCBI nr
Match: PUZ39219.1 (hypothetical protein GQ55_9G268800 [Panicum hallii var. hallii])

HSP 1 Score: 99.4 bits (246), Expect = 1.6e-17
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 23 MAHFGFTRSFGNHRRRCDVHALISRGATLLSLGFIFILYTMFVWWLDVLRES 75
          MA+FGFTRSFGNH RRCDVHALISRGATLLSLG IF+LYTMFVWW DVLRES
Sbjct: 1  MAYFGFTRSFGNHCRRCDVHALISRGATLLSLGLIFLLYTMFVWWRDVLRES 52

[Close]

BLAST of CcUC02G023660 vs. NCBI nr
Match: VDD26767.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 97.4 bits (241), Expect = 5.9e-17
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 23 MAHFGFTRSFGNHRRRCDVHALISRGATLLSLGFIFILYTMFVWWLDVLRES 75
          MA+FGFTRSFGNHRRRCDVHA ISRGA LLSLG IF+LYTMFVWW DVLRES
Sbjct: 1  MAYFGFTRSFGNHRRRCDVHAPISRGARLLSLGLIFLLYTMFVWWRDVLRES 52

[Close]

BLAST of CcUC02G023660 vs. NCBI nr
Match: YP_009315972.1 (cytochrome oxidase subunit 3 [Cocos nucifera] >AOX12966.1 cytochrome oxidase subunit 3 [Cocos nucifera])

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 45/100 (45.00%), Postives = 48/100 (48.00%), Query Frame = 0


Query: 1  MRPKRAPSFTILAGGGEGGSKSMAHFGFTRSFGNHRRRCDVHAL---------------- 60
          MRPKRAP FT L GGGEGG     H    + F    +R   H +                
Sbjct: 1  MRPKRAPFFTTLGGGGEGG----LHTTGAKWFMIESQRHSYHLVDPSPWPISGSLGALAT 60

Query: 61 ----------ISRGATLLSLGFIFILYTMFVWWLDVLRES 75
                       GATLLSLG IFILYTMFVWW DVLRES
Sbjct: 61 TVGGVMYMHPFQGGATLLSLGLIFILYTMFVWWRDVLRES 96

[Close]

BLAST of CcUC02G023660 vs. NCBI nr
Match: KAG6604293.1 (Cytochrome c oxidase subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 31/49 (63.27%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 26  FGFTRSFGNHRRRCDVHALISRGATLLSLGFIFILYTMFVWWLDVLRES 75
           F   RSFGNHRRRCDVHALISRG      G       +FVWW DVLRES
Sbjct: 64  FRVHRSFGNHRRRCDVHALISRGCNTSQFGHHIYPMYLFVWWRDVLRES 112

[Close]

BLAST of CcUC02G023660 vs. ExPASy Swiss-Prot
Match: P32808 (Cytochrome c oxidase subunit 3 OS=Helianthus annuus OX=4232 GN=COX3 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.2e-06
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 48 GATLLSLGFIFILYTMFVWWLDVLRES 75
          GATLLSLG IFILYTMFVWW DVLRES
Sbjct: 42 GATLLSLGLIFILYTMFVWWRDVLRES 68

[Close]

BLAST of CcUC02G023660 vs. ExPASy Swiss-Prot
Match: P14853 (Cytochrome c oxidase subunit 3 OS=Glycine max OX=3847 GN=COX3 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.2e-06
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 48 GATLLSLGFIFILYTMFVWWLDVLRES 75
          GATLLSLG IFILYTMFVWW DVLRES
Sbjct: 42 GATLLSLGLIFILYTMFVWWRDVLRES 68

[Close]

BLAST of CcUC02G023660 vs. ExPASy Swiss-Prot
Match: Q03227 (Cytochrome c oxidase subunit 3 OS=Vicia faba OX=3906 GN=COX3 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.2e-06
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 48 GATLLSLGFIFILYTMFVWWLDVLRES 75
          GATLLSLG IFILYTMFVWW DVLRES
Sbjct: 42 GATLLSLGLIFILYTMFVWWRDVLRES 68

[Close]

BLAST of CcUC02G023660 vs. ExPASy Swiss-Prot
Match: P15953 (Cytochrome c oxidase subunit 3 OS=Triticum aestivum OX=4565 GN=COX3 PE=2 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 2.2e-06
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 48 GATLLSLGFIFILYTMFVWWLDVLRES 75
          GATLLSLG IFILYTMFVWW DVLRES
Sbjct: 42 GATLLSLGLIFILYTMFVWWRDVLRES 68

[Close]

BLAST of CcUC02G023660 vs. ExPASy Swiss-Prot
Match: Q36952 (Cytochrome c oxidase subunit 3 OS=Aegilops columnaris OX=4493 GN=COX3 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.7e-06
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 48 GATLLSLGFIFILYTMFVWWLDVLRES 75
          GATLLSLG IF+LYTMFVWW DVLRES
Sbjct: 42 GATLLSLGLIFLLYTMFVWWRDVLRES 68

[Close]

BLAST of CcUC02G023660 vs. ExPASy TrEMBL
Match: A0A2T7C796 (Cytochrome c oxidase subunit 3 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G268800 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.5e-18
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 23 MAHFGFTRSFGNHRRRCDVHALISRGATLLSLGFIFILYTMFVWWLDVLRES 75
          MA+FGFTRSFGNH RRCDVHALISRGATLLSLG IF+LYTMFVWW DVLRES
Sbjct: 1  MAYFGFTRSFGNHCRRCDVHALISRGATLLSLGLIFLLYTMFVWWRDVLRES 52

[Close]

BLAST of CcUC02G023660 vs. ExPASy TrEMBL
Match: A0A3P6D6P0 (Cytochrome c oxidase subunit 3 OS=Brassica campestris OX=3711 GN=BRASC177T45751Z PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.9e-17
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 23 MAHFGFTRSFGNHRRRCDVHALISRGATLLSLGFIFILYTMFVWWLDVLRES 75
          MA+FGFTRSFGNHRRRCDVHA ISRGA LLSLG IF+LYTMFVWW DVLRES
Sbjct: 1  MAYFGFTRSFGNHRRRCDVHAPISRGARLLSLGLIFLLYTMFVWWRDVLRES 52

[Close]

BLAST of CcUC02G023660 vs. ExPASy TrEMBL
Match: A0A2Z2CD33 (Cytochrome c oxidase subunit 3 OS=Cocos nucifera OX=13894 GN=cox3 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.1e-08
Identity = 45/100 (45.00%), Postives = 48/100 (48.00%), Query Frame = 0


Query: 1  MRPKRAPSFTILAGGGEGGSKSMAHFGFTRSFGNHRRRCDVHAL---------------- 60
          MRPKRAP FT L GGGEGG     H    + F    +R   H +                
Sbjct: 1  MRPKRAPFFTTLGGGGEGG----LHTTGAKWFMIESQRHSYHLVDPSPWPISGSLGALAT 60

Query: 61 ----------ISRGATLLSLGFIFILYTMFVWWLDVLRES 75
                       GATLLSLG IFILYTMFVWW DVLRES
Sbjct: 61 TVGGVMYMHPFQGGATLLSLGLIFILYTMFVWWRDVLRES 96

[Close]

BLAST of CcUC02G023660 vs. ExPASy TrEMBL
Match: A0A4D8YNU3 (Mitochondrial protein YMF19 OS=Salvia splendens OX=180675 GN=ATPF0B PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.1e-07
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 11  ILAGGGEGGSKSMAHFGFTRSFGNHRRRCDVHALISRGATLLSLG 56
           +L   G  GSKSMA+FGFTRSFGN+RRRCDVHALISRG      G
Sbjct: 150 VLHSQGSIGSKSMAYFGFTRSFGNNRRRCDVHALISRGCNTSQFG 194

[Close]

BLAST of CcUC02G023660 vs. ExPASy TrEMBL
Match: Q1KZN6 (Cytochrome c oxidase subunit 3 (Fragment) OS=Sambucus nigra subsp. canadensis OX=57008 GN=cox3 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.3e-06
Identity = 31/44 (70.45%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 31 SFGNHRRRCDVHALISRGATLLSLGFIFILYTMFVWWLDVLRES 75
          SFGNHRR          GATLLSLG IF+LYTMFVWW DVLRES
Sbjct: 1  SFGNHRRGVMYMHPFQGGATLLSLGLIFLLYTMFVWWRDVLRES 44

[Close]

BLAST of CcUC02G023660 vs. TAIR 10
Match: AT2G07687.1 (Cytochrome c oxidase, subunit III )

HSP 1 Score: 50.4 bits (119), Expect = 7.7e-07
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 48 GATLLSLGFIFILYTMFVWWLDVLRES 75
          GA LLSLG IFILYTMFVWW DVLRES
Sbjct: 42 GARLLSLGLIFILYTMFVWWRDVLRES 68

[Close]

BLAST of CcUC02G023660 vs. TAIR 10
Match: ATMG00730.1 (cytochrome c oxidase subunit 3 )

HSP 1 Score: 50.4 bits (119), Expect = 7.7e-07
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 48 GATLLSLGFIFILYTMFVWWLDVLRES 75
          GA LLSLG IFILYTMFVWW DVLRES
Sbjct: 42 GARLLSLGLIFILYTMFVWWRDVLRES 68

The following BLAST results are available for this feature:

BLAST of CcUC02G023660 vs. NCBI nr


Match Name	E-value	Identity	Description
GFP95426.1	7.0e-18	92.31	cytochrome c oxidase subunit 3 [Phtheirospermum japonicum]	[more]
PUZ39219.1	1.6e-17	90.38	hypothetical protein GQ55_9G268800 [Panicum hallii var. hallii]	[more]
VDD26767.1	5.9e-17	88.46	unnamed protein product [Brassica rapa]	[more]
YP_009315972.1	1.5e-07	45.00	cytochrome oxidase subunit 3 [Cocos nucifera] >AOX12966.1 cytochrome oxidase sub...	[more]
KAG6604293.1	1.6e-06	63.27	Cytochrome c oxidase subunit 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CcUC02G023660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32808	2.2e-06	92.59	Cytochrome c oxidase subunit 3 OS=Helianthus annuus OX=4232 GN=COX3 PE=3 SV=1	[more]
P14853	2.2e-06	92.59	Cytochrome c oxidase subunit 3 OS=Glycine max OX=3847 GN=COX3 PE=2 SV=1	[more]
Q03227	2.2e-06	92.59	Cytochrome c oxidase subunit 3 OS=Vicia faba OX=3906 GN=COX3 PE=3 SV=1	[more]
P15953	2.2e-06	92.59	Cytochrome c oxidase subunit 3 OS=Triticum aestivum OX=4565 GN=COX3 PE=2 SV=2	[more]
Q36952	3.7e-06	88.89	Cytochrome c oxidase subunit 3 OS=Aegilops columnaris OX=4493 GN=COX3 PE=3 SV=1	[more]

BLAST of CcUC02G023660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2T7C796	7.5e-18	90.38	Cytochrome c oxidase subunit 3 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_...	[more]
A0A3P6D6P0	2.9e-17	88.46	Cytochrome c oxidase subunit 3 OS=Brassica campestris OX=3711 GN=BRASC177T45751Z...	[more]
A0A2Z2CD33	7.1e-08	45.00	Cytochrome c oxidase subunit 3 OS=Cocos nucifera OX=13894 GN=cox3 PE=3 SV=1	[more]
A0A4D8YNU3	2.1e-07	68.89	Mitochondrial protein YMF19 OS=Salvia splendens OX=180675 GN=ATPF0B PE=3 SV=1	[more]
Q1KZN6	2.3e-06	70.45	Cytochrome c oxidase subunit 3 (Fragment) OS=Sambucus nigra subsp. canadensis OX...	[more]

BLAST of CcUC02G023660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07687.1	7.7e-07	88.89	Cytochrome c oxidase, subunit III	[more]
ATMG00730.1	7.7e-07	88.89	cytochrome c oxidase subunit 3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.70		coord: 18..76 e-value: 1.8E-8 score: 36.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G023660.1	CcUC02G023660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019646	aerobic electron transport chain
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0004129	cytochrome-c oxidase activity