CcUC02G023320 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G023320
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	type IV secretion system protein virB10-like
Location	CicolChr02: 6121474 .. 6121878 (-)
RNA-Seq Expression	CcUC02G023320
Synteny	CcUC02G023320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACTCCCCTCGACCAGCTCCAGCCCCCGCCGCCCCTCCACTCCTCCCACGCCTCCGTCGGCCCACTCATTGCCGTCCTCGCCGTCATTTCCATCCTCGGCGTCATTGCCGGCATGATTGGCCGCCTCTGCTCCGGCCGCCCTGTCTTTGGCTACGGTGCCCACTACGACGTCGAGGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGACGGCTCCCTCGACCCTCCTCCTCCTCCGCCGCACCTCCGCCGCCCACCGCCGCTCGAATCTGTTCCTGTGGCTGAACCGCTTGATGGGCCACCACCGGAGATCAAGCAAGCTGCCGATCCCGATGTGGAGGCCGATGCTAAACGCGAGAATTTGCAGTCGGCGCCTCCTGGAACCGGCGGTGAGTCGTGA

mRNA sequence

ATGTCCACTCCCCTCGACCAGCTCCAGCCCCCGCCGCCCCTCCACTCCTCCCACGCCTCCGTCGGCCCACTCATTGCCGTCCTCGCCGTCATTTCCATCCTCGGCGTCATTGCCGGCATGATTGGCCGCCTCTGCTCCGGCCGCCCTGTCTTTGGCTACGGTGCCCACTACGACGTCGAGGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGACGGCTCCCTCGACCCTCCTCCTCCTCCGCCGCACCTCCGCCGCCCACCGCCGCTCGAATCTGTTCCTGTGGCTGAACCGCTTGATGGGCCACCACCGGAGATCAAGCAAGCTGCCGATCCCGATGTGGAGGCCGATGCTAAACGCGAGAATTTGCAGTCGGCGCCTCCTGGAACCGGCGGTGAGTCGTGA

Coding sequence (CDS)

ATGTCCACTCCCCTCGACCAGCTCCAGCCCCCGCCGCCCCTCCACTCCTCCCACGCCTCCGTCGGCCCACTCATTGCCGTCCTCGCCGTCATTTCCATCCTCGGCGTCATTGCCGGCATGATTGGCCGCCTCTGCTCCGGCCGCCCTGTCTTTGGCTACGGTGCCCACTACGACGTCGAGGATTGGGTCGAGAAGAAATGTGCTTCCTGCCTCGACGGCTCCCTCGACCCTCCTCCTCCTCCGCCGCACCTCCGCCGCCCACCGCCGCTCGAATCTGTTCCTGTGGCTGAACCGCTTGATGGGCCACCACCGGAGATCAAGCAAGCTGCCGATCCCGATGTGGAGGCCGATGCTAAACGCGAGAATTTGCAGTCGGCGCCTCCTGGAACCGGCGGTGAGTCGTGA

Protein sequence

MSTPLDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEPLDGPPPEIKQAADPDVEADAKRENLQSAPPGTGGES

Homology

[Close]

BLAST of CcUC02G023320 vs. NCBI nr
Match: XP_038887147.1 (uncharacterized protein LOC120077337 [Benincasa hispida])

HSP 1 Score: 238.0 bits (606), Expect = 4.6e-59
Identity = 123/137 (89.78%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MSTPLDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60
           MSTPLDQLQPPP LHS+HASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPLDQLQPPPSLHSAHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60

Query: 61  DWVEKKCASCLDGSLD-PPPPPPHLRRPPPLESVPVAEPLDGPPPEIKQAADPD--VEAD 120
           DW+EKKCASCLDGSLD PPPPPPHLRRPP L+SVPVAEPL GPPPEIKQ AD D  V+ D
Sbjct: 61  DWIEKKCASCLDGSLDPPPPPPPHLRRPPLLDSVPVAEPLGGPPPEIKQGADADAVVDTD 120

Query: 121 AKRENLQSAPPGTGGES 135
            KRENLQSAPPGTGGES
Sbjct: 121 VKRENLQSAPPGTGGES 137

[Close]

BLAST of CcUC02G023320 vs. NCBI nr
Match: KAE8645870.1 (hypothetical protein Csa_017149 [Cucumis sativus])

HSP 1 Score: 236.9 bits (603), Expect = 1.0e-58
Identity = 120/132 (90.91%), Postives = 124/132 (93.94%), Query Frame = 0


Query: 1   MSTPLDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYD+E
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDLE 60

Query: 61  DWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEPLDGPPPEIKQAADPDVEADAKR 120
           DWVEKKCASCLDGSLDPPPPPPHLR PPPL+SVPVAEPL GPPPEIKQ+A  D  ADAK 
Sbjct: 61  DWVEKKCASCLDGSLDPPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQSAHAD--ADAKG 120

Query: 121 ENLQSAPPGTGG 133
           ENLQSA PGTGG
Sbjct: 121 ENLQSAAPGTGG 130

[Close]

BLAST of CcUC02G023320 vs. NCBI nr
Match: XP_008455516.1 (PREDICTED: type IV secretion system protein virB10-like [Cucumis melo] >KAA0031279.1 type IV secretion system protein virB10-like [Cucumis melo var. makuwa])

HSP 1 Score: 235.7 bits (600), Expect = 2.3e-58
Identity = 123/138 (89.13%), Postives = 125/138 (90.58%), Query Frame = 0


Query: 1   MSTPLDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60

Query: 61  DWVEKKCASCLDGSLD----PPPPPPHLRRPPPLESVPVAEPLDGPPPEIKQAADPDVEA 120
           DWVEKKCASCLDGSLD    PPPPPPHLR PPPL+SVPVAEPL GPPPEIKQ AD    A
Sbjct: 61  DWVEKKCASCLDGSLDPPPPPPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQGAD----A 120

Query: 121 DAKRENLQSAPPGTGGES 135
           DAK ENLQSA PGTGGES
Sbjct: 121 DAKGENLQSAAPGTGGES 134

[Close]

BLAST of CcUC02G023320 vs. NCBI nr
Match: KAG7011671.1 (hypothetical protein SDJN02_26577, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.3 bits (534), Expect = 1.0e-50
Identity = 111/137 (81.02%), Postives = 117/137 (85.40%), Query Frame = 0


Query: 1   MSTPLDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPP  HS H SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPVDQLQPPPTAHSGHGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60

Query: 61  DWVEKKCASCLDGSLD---PPPPPPHLRRPPPLESVPVAEPLDGPPPEIKQAADPDVEAD 120
           +WVEKKCASCLDGSLD   PPPPPPHLR PPPL++VPV EPL G PPEIKQ AD      
Sbjct: 61  EWVEKKCASCLDGSLDPPPPPPPPPHLRHPPPLDAVPVVEPLGG-PPEIKQGADD----- 120

Query: 121 AKRENLQSAPPGTGGES 135
            KRENLQSA PGTGGES
Sbjct: 121 -KRENLQSAAPGTGGES 130

[Close]

BLAST of CcUC02G023320 vs. NCBI nr
Match: XP_022972364.1 (uncharacterized protein LOC111470940 [Cucurbita maxima])

HSP 1 Score: 209.5 bits (532), Expect = 1.7e-50
Identity = 108/132 (81.82%), Postives = 113/132 (85.61%), Query Frame = 0


Query: 1   MSTPLDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60
           MSTP DQLQPPP  HS H SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPFDQLQPPPTAHSGHGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60

Query: 61  DWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEPLDGPPPEIKQAADPDVEADAKR 120
           +WVEKKCASCLDGSLDPPPPP HLR PPPL++VPV EPL G PPEIKQ       AD KR
Sbjct: 61  EWVEKKCASCLDGSLDPPPPPAHLRHPPPLDAVPVVEPLGG-PPEIKQG------ADEKR 120

Query: 121 ENLQSAPPGTGG 133
           ENLQSA PGTGG
Sbjct: 121 ENLQSAAPGTGG 125

[Close]

BLAST of CcUC02G023320 vs. ExPASy TrEMBL
Match: A0A0A0K6N4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074850 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 5.8e-60
Identity = 122/134 (91.04%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MSTPLDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYD+E
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDLE 60

Query: 61  DWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEPLDGPPPEIKQAADPDVEADAKR 120
           DWVEKKCASCLDGSLDPPPPPPHLR PPPL+SVPVAEPL GPPPEIKQ+A  D  ADAK 
Sbjct: 61  DWVEKKCASCLDGSLDPPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQSAHAD--ADAKG 120

Query: 121 ENLQSAPPGTGGES 135
           ENLQSA PGTGGES
Sbjct: 121 ENLQSAAPGTGGES 132

[Close]

BLAST of CcUC02G023320 vs. ExPASy TrEMBL
Match: A0A5A7SPN0 (Type IV secretion system protein virB10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G00320 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58
Identity = 123/138 (89.13%), Postives = 125/138 (90.58%), Query Frame = 0


Query: 1   MSTPLDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60

Query: 61  DWVEKKCASCLDGSLD----PPPPPPHLRRPPPLESVPVAEPLDGPPPEIKQAADPDVEA 120
           DWVEKKCASCLDGSLD    PPPPPPHLR PPPL+SVPVAEPL GPPPEIKQ AD    A
Sbjct: 61  DWVEKKCASCLDGSLDPPPPPPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQGAD----A 120

Query: 121 DAKRENLQSAPPGTGGES 135
           DAK ENLQSA PGTGGES
Sbjct: 121 DAKGENLQSAAPGTGGES 134

[Close]

BLAST of CcUC02G023320 vs. ExPASy TrEMBL
Match: A0A1S3C1T9 (type IV secretion system protein virB10-like OS=Cucumis melo OX=3656 GN=LOC103495668 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58
Identity = 123/138 (89.13%), Postives = 125/138 (90.58%), Query Frame = 0


Query: 1   MSTPLDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPIDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60

Query: 61  DWVEKKCASCLDGSLD----PPPPPPHLRRPPPLESVPVAEPLDGPPPEIKQAADPDVEA 120
           DWVEKKCASCLDGSLD    PPPPPPHLR PPPL+SVPVAEPL GPPPEIKQ AD    A
Sbjct: 61  DWVEKKCASCLDGSLDPPPPPPPPPPHLRHPPPLDSVPVAEPLGGPPPEIKQGAD----A 120

Query: 121 DAKRENLQSAPPGTGGES 135
           DAK ENLQSA PGTGGES
Sbjct: 121 DAKGENLQSAAPGTGGES 134

[Close]

BLAST of CcUC02G023320 vs. ExPASy TrEMBL
Match: A0A6J1IBA8 (uncharacterized protein LOC111470940 OS=Cucurbita maxima OX=3661 GN=LOC111470940 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 8.5e-51
Identity = 108/132 (81.82%), Postives = 113/132 (85.61%), Query Frame = 0


Query: 1   MSTPLDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60
           MSTP DQLQPPP  HS H SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPFDQLQPPPTAHSGHGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60

Query: 61  DWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEPLDGPPPEIKQAADPDVEADAKR 120
           +WVEKKCASCLDGSLDPPPPP HLR PPPL++VPV EPL G PPEIKQ       AD KR
Sbjct: 61  EWVEKKCASCLDGSLDPPPPPAHLRHPPPLDAVPVVEPLGG-PPEIKQG------ADEKR 120

Query: 121 ENLQSAPPGTGG 133
           ENLQSA PGTGG
Sbjct: 121 ENLQSAAPGTGG 125

[Close]

BLAST of CcUC02G023320 vs. ExPASy TrEMBL
Match: A0A6J1GL66 (uncharacterized protein LOC111455383 OS=Cucurbita moschata OX=3662 GN=LOC111455383 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.2e-49
Identity = 108/133 (81.20%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MSTPLDQLQPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVE 60
           MSTP+DQLQPPP  HS + SVGP+IAVLAVISILGVIAG+IGRLCSGRPVFGYGAHYDVE
Sbjct: 1   MSTPVDQLQPPPTAHSGYGSVGPVIAVLAVISILGVIAGIIGRLCSGRPVFGYGAHYDVE 60

Query: 61  DWVEKKCASCLDGSLD-PPPPPPHLRRPPPLESVPVAEPLDGPPPEIKQAADPDVEADAK 120
           +WVEKKCASCLDGSLD PPPPPPHLR PPPL++VPV EPL G PPEIKQ AD       K
Sbjct: 61  EWVEKKCASCLDGSLDPPPPPPPHLRHPPPLDAVPVVEPLGG-PPEIKQGADD------K 120

Query: 121 RENLQSAPPGTGG 133
           RENLQSA PGTGG
Sbjct: 121 RENLQSAAPGTGG 126

[Close]

BLAST of CcUC02G023320 vs. TAIR 10
Match: AT2G26520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 8.2e-14
Identity = 52/132 (39.39%), Postives = 73/132 (55.30%), Query Frame = 0


Query: 9   QPPPPLHSS----------HASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYD 68
           QPPP    S          ++++GP IAV  V+++L V+A +IGRLCSG+ + GYG  YD
Sbjct: 9   QPPPATEVSQDSSSVSSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILGYG-DYD 68

Query: 69  VEDWVEKKCASCLDGSLDPPPPPPHLRRPPPLESVPVAEPLDGPPPEIK-QAADPDVEAD 128
           +E W E +C SC+DG + P  P P    PPP +  P+     G   E +   AD D E D
Sbjct: 69  MERWAESRCGSCIDGHIHPHRPSPS-PTPPPRQ--PLHHTSSGVSAESEGHVADLDHETD 128

[Close]

BLAST of CcUC02G023320 vs. TAIR 10
Match: AT3G57500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-12
Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 9   QPPPPLHSSHASVGPLIAVLAVISILGVIAGMIGRLCSGRPVFGYGAHYDVEDWVEKKCA 68
           Q  P  +S H S+  L+ VLAVI+IL V+AG+  RLC GR +  +G  +D+E WVE+KC 
Sbjct: 26  QDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRHL-SHGGDHDIEGWVERKCR 85

Query: 69  SCLDG-----SLDPPPPPPHLRRPPPLESVPVAEP 99
           SC+D      S  P PPPP    PPP  +   ++P
Sbjct: 86  SCIDAGIPAVSAAPSPPPP----PPPATAEERSKP 115

The following BLAST results are available for this feature:

BLAST of CcUC02G023320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887147.1	4.6e-59	89.78	uncharacterized protein LOC120077337 [Benincasa hispida]	[more]
KAE8645870.1	1.0e-58	90.91	hypothetical protein Csa_017149 [Cucumis sativus]	[more]
XP_008455516.1	2.3e-58	89.13	PREDICTED: type IV secretion system protein virB10-like [Cucumis melo] >KAA00312...	[more]
KAG7011671.1	1.0e-50	81.02	hypothetical protein SDJN02_26577, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022972364.1	1.7e-50	81.82	uncharacterized protein LOC111470940 [Cucurbita maxima]	[more]

BLAST of CcUC02G023320 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G023320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6N4	5.8e-60	91.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074850 PE=4 SV=1	[more]
A0A5A7SPN0	1.1e-58	89.13	Type IV secretion system protein virB10-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3C1T9	1.1e-58	89.13	type IV secretion system protein virB10-like OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1IBA8	8.5e-51	81.82	uncharacterized protein LOC111470940 OS=Cucurbita maxima OX=3661 GN=LOC111470940...	[more]
A0A6J1GL66	1.2e-49	81.20	uncharacterized protein LOC111455383 OS=Cucurbita moschata OX=3662 GN=LOC1114553...	[more]

BLAST of CcUC02G023320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26520.1	8.2e-14	39.39	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G57500.1	1.2e-12	44.21	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..134
None	No IPR available	PANTHER	PTHR33429	OS02G0708000 PROTEIN-RELATED	coord: 15..120
None	No IPR available	PANTHER	PTHR33429:SF2	OS01G0888850 PROTEIN	coord: 15..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G023320.1	CcUC02G023320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane