CcUC02G018790 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G018790
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Actin cytoskeleton-regulatory complex protein
Location	CicolChr02: 1566235 .. 1566525 (-)
RNA-Seq Expression	CcUC02G018790
Synteny	CcUC02G018790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAAATTTGGTTTCTTTGCCTCGTTGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGGATCTCCCTCTGTCTGCGGCGCCGGAGCCACTAGAGACCAGGACTAGAGAAGGGTATGGAGTGGCGGAGGCGCCAGAGATCCGGCGACTGGGAAAGCACCACGGCGATAACTCGGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTATAACGGCAATTTTTGCAGCTGTTTTTTGTTATCTTCGGGTTACTAGAAAAAAAGATGGAGTTGATTCGGTTCATTGA

mRNA sequence

ATGGCTAAAATTTGGTTTCTTTGCCTCGTTGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGGATCTCCCTCTGTCTGCGGCGCCGGAGCCACTAGAGACCAGGACTAGAGAAGGGTATGGAGTGGCGGAGGCGCCAGAGATCCGGCGACTGGGAAAGCACCACGGCGATAACTCGGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTATAACGGCAATTTTTGCAGCTGTTTTTTGTTATCTTCGGGTTACTAGAAAAAAAGATGGAGTTGATTCGGTTCATTGA

Coding sequence (CDS)

ATGGCTAAAATTTGGTTTCTTTGCCTCGTTGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGGATCTCCCTCTGTCTGCGGCGCCGGAGCCACTAGAGACCAGGACTAGAGAAGGGTATGGAGTGGCGGAGGCGCCAGAGATCCGGCGACTGGGAAAGCACCACGGCGATAACTCGGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTATAACGGCAATTTTTGCAGCTGTTTTTTGTTATCTTCGGGTTACTAGAAAAAAAGATGGAGTTGATTCGGTTCATTGA

Protein sequence

MAKIWFLCLVVAEILLIQAMASDLPLSAAPEPLETRTREGYGVAEAPEIRRLGKHHGDNSVAGGGVIIGGLITAIFAAVFCYLRVTRKKDGVDSVH

Homology

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BLAST of CcUC02G018790 vs. NCBI nr
Match: KAA0031619.1 (hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK07071.1 hypothetical protein E5676_scaffold13G003890 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 82/102 (80.39%), Postives = 86/102 (84.31%), Query Frame = 0


Query: 1   MAKIWFL-CLVVAEILLIQAMAS-----DLPLSAAPEPLETRTREGYGVAEAPEIRRLGK 60
           MAK   L CL+VAEILLIQAM S     DLPLSAAPEP E  TREG  VAEAPEIRRLGK
Sbjct: 1   MAKTCLLFCLIVAEILLIQAMTSIATTTDLPLSAAPEPAEKGTREGSDVAEAPEIRRLGK 60

Query: 61  HHGDNSVAGGGVIIGGLITAIFAAVFCYLRVTRKKDGVDSVH 97
           HHGD SVAGGGVIIGGL+TAIFAAVFCY+RVTRK+DGVDSVH
Sbjct: 61  HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSVH 102

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BLAST of CcUC02G018790 vs. NCBI nr
Match: KAG6572323.1 (hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.6 bits (353), Expect = 7.1e-30
Identity = 75/101 (74.26%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 1   MAKIWFLCLVVAEILLIQAMASDLP-----LSAAPEPLETRTREGYGVAEAPEIRRLGKH 60
           MAKI  LCL++A+ILLIQAMAS        +SAAPEP ET   EG G+AEAPEIRRLGKH
Sbjct: 1   MAKISLLCLILAQILLIQAMASTATTTTSHVSAAPEPSETDNVEGPGLAEAPEIRRLGKH 60

Query: 61  HGDNSVAGGGVIIGGLITAIFAAVFCYLRVTRKKDGVDSVH 97
           H D SVAGGGVIIGGL+TA+FAAVFCY+RVTRK+DGVDSVH
Sbjct: 61  HVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 101

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BLAST of CcUC02G018790 vs. NCBI nr
Match: KAG7011935.1 (hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-28
Identity = 74/101 (73.27%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 1   MAKIWFLCLVVAEILLIQAMASDLP-----LSAAPEPLETRTREGYGVAEAPEIRRLGKH 60
           MAKI  L L++A+ILLIQAMAS        +SAAPEP ET   EG G+AEAPEIRRLGKH
Sbjct: 1   MAKISLLSLILAQILLIQAMASTATTTTSHVSAAPEPSETDNVEGPGLAEAPEIRRLGKH 60

Query: 61  HGDNSVAGGGVIIGGLITAIFAAVFCYLRVTRKKDGVDSVH 97
           H D SVAGGGVIIGGL+TA+FAAVFCY+RVTRK+DGVDSVH
Sbjct: 61  HVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 101

[Close]

BLAST of CcUC02G018790 vs. NCBI nr
Match: KAE8645753.1 (hypothetical protein Csa_020263 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 63/91 (69.23%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1  MAKIWFL-CLVVAEILLIQAM------ASDLPLSAAPEPLETRTREGYGVAEAPEIRRLG 60
          MAKI  L CL+V EI LIQA+       ++LPLS APE  E  TREG  VAEAPEIRRLG
Sbjct: 1  MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61 KHHGDNSVAGGGVIIGGLITAIFAAVFCYLR 85
          KHHGD S+AGGGVIIGGL+TA+FAAVFCY+R
Sbjct: 61 KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIR 91

[Close]

BLAST of CcUC02G018790 vs. NCBI nr
Match: KAF3964431.1 (hypothetical protein CMV_011281 [Castanea mollissima])

HSP 1 Score: 94.7 bits (234), Expect = 4.5e-16
Identity = 59/122 (48.36%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 1   MAKIWFLC--LVVAEILLIQAMA----------------------------SDLPLSAAP 60
           M ++   C  +++AEIL++QAMA                            +D P+S+  
Sbjct: 70  MGRLGLFCFMVILAEILVVQAMAGKSEGSELNPFGLKAQHKVGTLRVVARLADQPVSSVA 129

Query: 61  EPLETRTREGYGVAEAPEIRRLGKHHGDNSVAGGGVIIGGLITAIFAAVFCYLRVTRKKD 93
           E  E   +E   VAEAP IRRLGKHH D SVAGGGVIIGGL+TAIFAAVFCY+RVTRK+D
Sbjct: 130 ESPE-GNKENSNVAEAPVIRRLGKHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRD 189

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BLAST of CcUC02G018790 vs. ExPASy TrEMBL
Match: A0A5D3C590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003890 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.7e-33
Identity = 82/102 (80.39%), Postives = 86/102 (84.31%), Query Frame = 0


Query: 1   MAKIWFL-CLVVAEILLIQAMAS-----DLPLSAAPEPLETRTREGYGVAEAPEIRRLGK 60
           MAK   L CL+VAEILLIQAM S     DLPLSAAPEP E  TREG  VAEAPEIRRLGK
Sbjct: 1   MAKTCLLFCLIVAEILLIQAMTSIATTTDLPLSAAPEPAEKGTREGSDVAEAPEIRRLGK 60

Query: 61  HHGDNSVAGGGVIIGGLITAIFAAVFCYLRVTRKKDGVDSVH 97
           HHGD SVAGGGVIIGGL+TAIFAAVFCY+RVTRK+DGVDSVH
Sbjct: 61  HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSVH 102

[Close]

BLAST of CcUC02G018790 vs. ExPASy TrEMBL
Match: A0A0A0K3N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.8e-29
Identity = 74/103 (71.84%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 1   MAKIWFL-CLVVAEILLIQAM------ASDLPLSAAPEPLETRTREGYGVAEAPEIRRLG 60
           MAKI  L CL+V EI LIQA+       ++LPLS APE  E  TREG  VAEAPEIRRLG
Sbjct: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61  KHHGDNSVAGGGVIIGGLITAIFAAVFCYLRVTRKKDGVDSVH 97
           KHHGD S+AGGGVIIGGL+TA+FAAVFCY+RVTRK+DGVDSVH
Sbjct: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 103

[Close]

BLAST of CcUC02G018790 vs. ExPASy TrEMBL
Match: A0A2N9IXN3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.6e-17
Identity = 58/120 (48.33%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 1   MAKIWFLCLVVAEILLIQAMA----------------------------SDLPLSAAPEP 60
           M ++   CL++AEIL++QAMA                            +D P+S+  E 
Sbjct: 1   MGRLGLFCLILAEILVVQAMAEKSEGSELNPFGLKAQNKNGALGVVARVADQPVSSIAES 60

Query: 61  LETRTREGYGVAEAPEIRRLGKHHGDNSVAGGGVIIGGLITAIFAAVFCYLRVTRKKDGV 93
            E  ++E   VAEAP IRR+GKHH D S+AGGGVIIGGL TAIFA VFCY+RVTRK+DGV
Sbjct: 61  PE--SKEYSDVAEAPVIRRMGKHHSDKSLAGGGVIIGGLATAIFAVVFCYIRVTRKRDGV 118

[Close]

BLAST of CcUC02G018790 vs. ExPASy TrEMBL
Match: A0A067KB75 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13835 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.7e-16
Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 8  CLVVAEILLIQAMASDLPL---SAAPEPLETRTREGYGVAEAPEIRRLGKHH-GDNSVAG 67
          CL++A IL++QA A +      S A +P+   +   +  AEAPEIRRLGKHH  D SVAG
Sbjct: 10 CLILAGILIVQATADESEKKSPSVADQPV--ASSHEWEEAEAPEIRRLGKHHSSDKSVAG 69

Query: 68 GGVIIGGLITAIFAAVFCYLRVTRKKDGVDSV 96
          GGVIIGGL+TAIFAAVFCY+RVTRKK   D V
Sbjct: 70 GGVIIGGLVTAIFAAVFCYIRVTRKKGSDDLV 99

[Close]

BLAST of CcUC02G018790 vs. ExPASy TrEMBL
Match: A0A067DDL6 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g038247mg PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.7e-16
Identity = 58/114 (50.88%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 1   MAKIWFLCL-VVAEILLIQAMASDL-----------PLSAAPEPLETRTREGY-----GV 60
           MA++  + L +VAEIL++QA+A              P   A +P  + +   Y       
Sbjct: 1   MARLVLVSLFIVAEILMVQAVADKSEVNPVGFNKPEPARVADQPASSASESSYYHNDPEA 60

Query: 61  AEAPEIRRLGK---HHGDNSVAGGGVIIGGLITAIFAAVFCYLRVTRKKDGVDS 95
           AEAPEIRRLGK   HH D SVAGGGVIIGGL+TAIFAAVFCY+RVTRK+ G D+
Sbjct: 61  AEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRHGADA 114

[Close]

BLAST of CcUC02G018790 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 2.4e-07
Identity = 38/96 (39.58%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 2  AKIWFLCLVVAEILLIQAMASDLPLSAAPEPLETRTREGYG-VAEAPEIRRL------GK 61
          AK   LC ++  +  + A +S+   +  P   +    E  G  AEAPE+  L      G 
Sbjct: 3  AKHIVLCFLLTYVFSMAAASSE---AEPPATRKLGRHEWPGEEAEAPEVSHLEETVRRGH 62

Query: 62 HHG--DNSVAGGGVIIGGLITAIFAAVFCYLRVTRK 89
          HH   + SVAGGGVI+GGL T     VFCY+R TRK
Sbjct: 63 HHSTVERSVAGGGVILGGLATTFLVVVFCYIRATRK 95

The following BLAST results are available for this feature:

BLAST of CcUC02G018790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031619.1	1.2e-32	80.39	hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK070...	[more]
KAG6572323.1	7.1e-30	74.26	hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011935.1	1.0e-28	73.27	hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8645753.1	1.6e-21	69.23	hypothetical protein Csa_020263 [Cucumis sativus]	[more]
KAF3964431.1	4.5e-16	48.36	hypothetical protein CMV_011281 [Castanea mollissima]	[more]

BLAST of CcUC02G018790 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G018790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C590	5.7e-33	80.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K3N0	3.8e-29	71.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1	[more]
A0A2N9IXN3	2.6e-17	48.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1	[more]
A0A067KB75	3.7e-16	59.78	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13835 PE=4 SV=1	[more]
A0A067DDL6	3.7e-16	50.88	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g038247mg PE=4 SV=1	[more]

BLAST of CcUC02G018790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09280.1	2.4e-07	39.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34558	EXPRESSED PROTEIN	coord: 1..94
None	No IPR available	PANTHER	PTHR34558:SF4	EXPRESSED PROTEIN	coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G018790.1	CcUC02G018790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane