CcUC02G017670 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G017670
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Coiled-coil domain-containing protein 18, putative isoform 2
Location	CicolChr02: 555373 .. 556112 (+)
RNA-Seq Expression	CcUC02G017670
Synteny	CcUC02G017670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCATTCTCCTCCCTCCTCGAAAGCACCCTGTTTTTCTAAAAGTTAAAAAATAAATAAAATAAAACAGTTAGAAGCCATTTTCGACCCGTCGTTTCTAGAGTTGTGTGTTGGGACGACTTGTCGTAGAAGAAGTTTGAAGAAGAAGGATAAGGTTTGAAAGTTTGAAGGAATAATAATGGGAAGCATTGATAGAAAATCATCTATTGAAAATGAGCCAAGGACTCTCAAAATGCATCAAATCCAATTTGCAAGAGTAAGTCTAATCTCTATTTTTTGTTTTTTCACTATTTGATTACTTGCTTTAAATTTTATTTTCTCTGGAGAGAAAGGAAGAGATTTTGTTGAAGAAAAAGATTGAATTTGTGTTATAACTCATTTTTAATTATTAGATTTTTCTGATGAATTTGGATAATTATTTCAGGAAGCAGCACTTTATGTGATGAACACAACCACCATAGAAGAAGCAATGAAGATTTTCACAGAGGTAAATATTAGCTAGAAATACAAATCTTTTTCTAATTACCAACTTACCCTATGACTGTAGTATTCATGAATTAAATGGTCATGATATGATGTGGAAAATAATGTAGGGATTACAAACAGTGGAATGTAAAGCAATTGAAGATAAAGATTCAATAATGGAAAATTGGTGCCATGAAGAAGAAGTTGATGAGTTACAACCTCTGTATCAACTTAGAGACATTGTCTCTGCCCCTTTTTAGTCTACCCTTTTTTTT

mRNA sequence

ATTTCATTCTCCTCCCTCCTCGAAAGCACCCTGTTTTTCTAAAAGTTAAAAAATAAATAAAATAAAACAGTTAGAAGCCATTTTCGACCCGTCGTTTCTAGAGTTGTGTGTTGGGACGACTTGTCGTAGAAGAAGTTTGAAGAAGAAGGATAAGGTTTGAAAGTTTGAAGGAATAATAATGGGAAGCATTGATAGAAAATCATCTATTGAAAATGAGCCAAGGACTCTCAAAATGCATCAAATCCAATTTGCAAGAGAAGCAGCACTTTATGTGATGAACACAACCACCATAGAAGAAGCAATGAAGATTTTCACAGAGGGATTACAAACAGTGGAATGTAAAGCAATTGAAGATAAAGATTCAATAATGGAAAATTGGTGCCATGAAGAAGAAGTTGATGAGTTACAACCTCTGTATCAACTTAGAGACATTGTCTCTGCCCCTTTTTAGTCTACCCTTTTTTTT

Coding sequence (CDS)

ATGGGAAGCATTGATAGAAAATCATCTATTGAAAATGAGCCAAGGACTCTCAAAATGCATCAAATCCAATTTGCAAGAGAAGCAGCACTTTATGTGATGAACACAACCACCATAGAAGAAGCAATGAAGATTTTCACAGAGGGATTACAAACAGTGGAATGTAAAGCAATTGAAGATAAAGATTCAATAATGGAAAATTGGTGCCATGAAGAAGAAGTTGATGAGTTACAACCTCTGTATCAACTTAGAGACATTGTCTCTGCCCCTTTTTAG

Protein sequence

MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTTTIEEAMKIFTEGLQTVECKAIEDKDSIMENWCHEEEVDELQPLYQLRDIVSAPF

Homology

[Close]

BLAST of CcUC02G017670 vs. NCBI nr
Match: XP_011649401.1 (uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical protein Csa_006615 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 3.1e-35
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTTTIEEAMKIFTEGLQTVECKAI-ED 60
          MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNT TIEEAMKIFTEGLQ VECKAI ED
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60

Query: 61 KDSIMENWCHEEEVDE-LQPLYQLRDIVSAPF 91
          KDSI++NW H+EE+DE LQP YQLRDIVSAPF
Sbjct: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]

BLAST of CcUC02G017670 vs. NCBI nr
Match: XP_008460897.1 (PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 6.9e-35
Identity = 80/92 (86.96%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTTTIEEAMKIFTEGLQTVECKAI--E 60
          MGSIDRKSSIENEPRTLKM+QIQFAREAALYV+NTTTIEEAMKIFTEGL+ VECKAI  E
Sbjct: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 61 DKDSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
          DKDSIM+NW H+EE+DELQP  QLRDIVSAPF
Sbjct: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

[Close]

BLAST of CcUC02G017670 vs. NCBI nr
Match: XP_038902606.1 (uncharacterized protein LOC120089256 [Benincasa hispida])

HSP 1 Score: 156.0 bits (393), Expect = 1.5e-34
Identity = 79/90 (87.78%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTTTIEEAMKIFTEGLQTVECKAIEDK 60
          MG+IDRKSSIENEPRTL+MHQIQFAREAALYV+NTTTIEEAMKIFTEGLQ VECKAI+DK
Sbjct: 1  MGNIDRKSSIENEPRTLRMHQIQFAREAALYVINTTTIEEAMKIFTEGLQPVECKAIQDK 60

Query: 61 DSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
          DSIM N+ HEEE DELQ LYQ RDIVSAPF
Sbjct: 61 DSIMGNYYHEEEDDELQSLYQPRDIVSAPF 90

[Close]

BLAST of CcUC02G017670 vs. NCBI nr
Match: KAG6605318.1 (hypothetical protein SDJN03_02635, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035274.1 hypothetical protein SDJN02_02069 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.1 bits (375), Expect = 1.9e-32
Identity = 74/90 (82.22%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTTTIEEAMKIFTEGLQTVECKAIEDK 60
          M  IDRKSSIENEPRTLKMHQIQFAREAALYV+NT++IEEAM+IFTEGL+ VECKAIED+
Sbjct: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKAIEDR 60

Query: 61 DSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
          DS M+N CHEEEVDEL  LY+L DIVSAPF
Sbjct: 61 DSSMQNCCHEEEVDELPSLYRLPDIVSAPF 90

[Close]

BLAST of CcUC02G017670 vs. NCBI nr
Match: XP_023512402.1 (uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo] >KAG7011119.1 hypothetical protein SDJN02_27917, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.3 bits (373), Expect = 3.2e-32
Identity = 74/91 (81.32%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTTTIEEAMKIFTEGLQTVECKAIEDK 60
          MG +DRKSSIE EPRTLKM+QIQFAREAALYVMNTT++EEA+KIFTEGL+ VECKAI D+
Sbjct: 1  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDE 60

Query: 61 D-SIMENWCHEEEVDELQPLYQLRDIVSAPF 91
          D SIMENW HE+E DEL PLYQLRDIV+APF
Sbjct: 61 DESIMENWFHEQEADELPPLYQLRDIVTAPF 91

[Close]

BLAST of CcUC02G017670 vs. ExPASy TrEMBL
Match: A0A0A0LQ89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.5e-35
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTTTIEEAMKIFTEGLQTVECKAI-ED 60
          MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNT TIEEAMKIFTEGLQ VECKAI ED
Sbjct: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTATIEEAMKIFTEGLQPVECKAIMED 60

Query: 61 KDSIMENWCHEEEVDE-LQPLYQLRDIVSAPF 91
          KDSI++NW H+EE+DE LQP YQLRDIVSAPF
Sbjct: 61 KDSIVKNWYHDEEIDESLQPFYQLRDIVSAPF 92

[Close]

BLAST of CcUC02G017670 vs. ExPASy TrEMBL
Match: A0A1S3CDH2 (uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.3e-35
Identity = 80/92 (86.96%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTTTIEEAMKIFTEGLQTVECKAI--E 60
          MGSIDRKSSIENEPRTLKM+QIQFAREAALYV+NTTTIEEAMKIFTEGL+ VECKAI  E
Sbjct: 1  MGSIDRKSSIENEPRTLKMNQIQFAREAALYVLNTTTIEEAMKIFTEGLKPVECKAIIDE 60

Query: 61 DKDSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
          DKDSIM+NW H+EE+DELQP  QLRDIVSAPF
Sbjct: 61 DKDSIMKNWYHDEEIDELQPFCQLRDIVSAPF 92

[Close]

BLAST of CcUC02G017670 vs. ExPASy TrEMBL
Match: A0A6J1G887 (uncharacterized protein LOC111451648 OS=Cucurbita moschata OX=3662 GN=LOC111451648 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.0e-31
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTTTIEEAMKIFTEGLQTVECKAIEDK 60
          M  IDRKSSIENEPRTLKMHQIQFAREAALYV+NT++IEEAM+IFTEGL+ VECK IED+
Sbjct: 1  MERIDRKSSIENEPRTLKMHQIQFAREAALYVINTSSIEEAMRIFTEGLEAVECKPIEDR 60

Query: 61 DSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
          DS M+N CHEEEVDEL   Y+L DIVSAPF
Sbjct: 61 DSSMQNCCHEEEVDELPSFYRLPDIVSAPF 90

[Close]

BLAST of CcUC02G017670 vs. ExPASy TrEMBL
Match: A0A6J1DBC1 (uncharacterized protein LOC111018915 OS=Momordica charantia OX=3673 GN=LOC111018915 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 66/92 (71.74%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 1  MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTTTIEEAMKIFTEGLQTVECKAIEDK 60
          MG IDRKSSIENEPRTLKMHQIQFAREAALY++NTTTI+EAM+IFTEGL+TVECKA  D+
Sbjct: 6  MGRIDRKSSIENEPRTLKMHQIQFAREAALYILNTTTIDEAMRIFTEGLETVECKATRDR 65

Query: 61 --DSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
            +   +   +EEE+ +L+PLY+ RDIVSAPF
Sbjct: 66 NINGRKKQVYYEEELSDLEPLYRFRDIVSAPF 97

[Close]

BLAST of CcUC02G017670 vs. ExPASy TrEMBL
Match: A0A1R3GDT9 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_35729 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.8e-15
Identity = 51/92 (55.43%), Postives = 64/92 (69.57%), Query Frame = 0


Query: 3   SIDRKSSIENEPRTLKMHQIQFAREAALYVMNTTTIEEAMKIFTEGLQTVECKAIEDKDS 62
           +IDRKSSIE+EPRTL  HQIQ AREAA+YV++T +IEEAM IFTEGL+ V   A  D   
Sbjct: 12  NIDRKSSIESEPRTLSFHQIQCAREAAMYVVSTRSIEEAMSIFTEGLEPVVSGARADNIG 71

Query: 63  IMENWCHEE----EVDELQPLYQLRDIVSAPF 91
                  +E    E++E Q L++ RD+VSAPF
Sbjct: 72  TNTMMDSKEMQFLELEEFQQLHEFRDVVSAPF 103

[Close]

BLAST of CcUC02G017670 vs. TAIR 10
Match: AT4G33467.1 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 6.3e-10
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 1   MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTTTIEEAMKIFTEGLQTVECKAIEDK 60
           M  ++R+SSIE EP TL + Q++ ARE ALYVM T T+EEAM IFT+       +A E++
Sbjct: 7   MDMLERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKQETHEGLRASEER 66

Query: 61  DSIMENWCHEEEVDELQPLYQL------RDIVSAPF 91
                N   EE+ D+ +    +       DI +APF
Sbjct: 67  GGRCINLKDEEDDDDYEDERMMFMSPHAWDIHTAPF 102

[Close]

BLAST of CcUC02G017670 vs. TAIR 10
Match: AT4G33467.2 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-09
Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 1   MGSIDRKSSIENEPRTLKMHQIQFAREAALYVMNTTTIEEAMKIFT----EGLQTVE--- 60
           M  ++R+SSIE EP TL + Q++ ARE ALYVM T T+EEAM IFT    EGL+  E   
Sbjct: 7   MDMLERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKETHEGLRASEERG 66

Query: 61  CKAIEDKDSIMENWCHEEEVDELQPLYQLRDIVSAPF 91
            + I  KD   ++   +E +  + P     DI +APF
Sbjct: 67  GRCINLKDEEDDDDYEDERMMFMSP--HAWDIHTAPF 101

The following BLAST results are available for this feature:

BLAST of CcUC02G017670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649401.1	3.1e-35	89.13	uncharacterized protein LOC105434623 [Cucumis sativus] >KGN62156.1 hypothetical ...	[more]
XP_008460897.1	6.9e-35	86.96	PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo]	[more]
XP_038902606.1	1.5e-34	87.78	uncharacterized protein LOC120089256 [Benincasa hispida]	[more]
KAG6605318.1	1.9e-32	82.22	hypothetical protein SDJN03_02635, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023512402.1	3.2e-32	81.32	uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo] >KAG7011119.1 ...	[more]

BLAST of CcUC02G017670 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G017670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ89	1.5e-35	89.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302230 PE=4 SV=1	[more]
A0A1S3CDH2	3.3e-35	86.96	uncharacterized protein LOC103499638 OS=Cucumis melo OX=3656 GN=LOC103499638 PE=...	[more]
A0A6J1G887	1.0e-31	80.00	uncharacterized protein LOC111451648 OS=Cucurbita moschata OX=3662 GN=LOC1114516...	[more]
A0A6J1DBC1	1.2e-27	71.74	uncharacterized protein LOC111018915 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A1R3GDT9	3.8e-15	55.43	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_35729 PE=4 SV=1	[more]

BLAST of CcUC02G017670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33467.1	6.3e-10	40.63	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact...	[more]
AT4G33467.2	1.4e-09	43.30	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34808:SF2	EXPRESSED PROTEIN	coord: 3..90
None	No IPR available	PANTHER	PTHR34808	EXPRESSED PROTEIN	coord: 3..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G017670.1	CcUC02G017670.1	mRNA