CcUC02G017470 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G017470
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr02: 394743 .. 396909 (-)
RNA-Seq Expression	CcUC02G017470
Synteny	CcUC02G017470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTTCTTCTTCCGAAGATGTTGGTTAGTTTTGATTTGATATCTCATTTGTTCTGTTGTTAGGTTTTGAGTTTCTTTTAATTAATAGGGATCCGATCCACTTTCCTTCATATCAATGAAAACTTTGTCGACAAATACAGTGCTCTGTTCTTGTTCTTGTTCTTGTTCAACATCGATTGTGCAATGCAAATTTAGGACACAAAAGAATAATGTTTAACACAAAATGACTTCTGTTGGAATGCTGGTTGAATATAATTTGAATGATTAGAGGCTTTGTTTCTTCAAATCTCTATCTATCAATTATTCTGTTTGCCATTCAAGTGTGTGTTTGAATTTACTGTGTAAAGTGATTTTGTTGTTCTTCGTTTGAGTTCTTACTGTTTTTTTTTTCTCTAATAAAAACTATCACTTCAATGCCAACATTTCAATGTTACTCACATTGTTTAATGACAGAGTTAGTAGAGGAACAATTTTTTGGATTTTATTATATCTCATAATGAACTATTGGGATTGTTTTTCTGTGCATTAACTGGTTATTGATAAATTTTAGGTAAGATTACATTCAATTTGATACCATATTCATTCTGTTTTGAAGCTATATAGTGAACATTTTTGTAGGAAATATATGATAGATCAAATTCCATTTTCTTAATTTAACTCTTGTCTAAACCCAATTGAGACTGCTCGATTTTGCATATCCCCTTATATTTACTCCGAAGGAGAAGAAGAAGAGAAAAGATAGATTCAGTAATTGCTGTAAAAGGAACTTGTTTTGATATCTAAGAACAAAATTTGGATGGCTAAAGATCATAATTTCAAAAGTAGAAACACTAGTATATGGGTTAAAATATGCAATCACTATAAATTAACAAGTAAAATTCCAACTATTACAGGGAGTTTGAAGACAAGAAATTAAAGCCATTGACCATCTAGCTATATCCTAATATCCTGTCATATGGAGCATTTGAGAAAAAACAGGTCGAATTTGCAAGTTTATCGACCACCATTGATGCTTGATCGAAGATGGATCTTTTCTTACATTCAGACCAATGCACATGGACAACATCGCTATCATATATACACTCACATGAAAGATCAATAAAGATCAATATTCCCATTTTAAATGGAGTAAACGACTCAAATTCTACTAGGAGATTCATTCGACTCAAATTCTTCCTCCGTATGAAATAACCAAACCTTCTTCAATGAAACTCAAATCTTTTAGCTAGCTTTACGACCCCATTGTTATGGCTAATGGCATTTCACTCTCACGAGATGCTACTGAGTCGTTGGATGACGAATTGCTTCGCCTTTGATCGCCATTGTCGCCGTCCTCCTCATTAGCTCGATCTCCCAAATCGCATTGAGGGGATTCAGCAGATGCATTATTGTTATTATTATTATTATTGGCATTTGCGTTATTTGCACCTACCTCCACACCAATACCAAGGGAGACTCTAAAACCACATGCACGTGAGATGACTCTATAGAAGAAAGTTAAGAGCCAGAAGAACCAAGGGAGGCAGACCAAGGACAAACCGGCGACGGGTAGCCAAGCGGTAGTTTCGGTCTCAGGGAGGATCATGTACATCAAAAGACAACCACCGCCGCTGACAATGGAAAAGAAGAGAAAGCAAGTGACGATCCATATGAATGCACGTCCAGCTGAGGGATTCACCAAAGACATTAATTTGGCGTTTGAAAGATTGTGAGTTTGATCAGAAGATAATGGATGAAAGCTTGAAAACAAGACTTAGAAACATGATGATGTTCTTCCTCTGATGATCATCTTCCATCTTCTTCATTGAGAAACAAACTGGGCGGAGATTTGCATCGAAATTTTGTTTTGTTAAGAAAACAGGAAGAAGAAGAAGAAGAAAAGTTTGCGGAGAGATCCTCAAGAGTTTCTGTATGGAGAAGAAACACAATATCTAATTTACAACTATTTTGGTCAAGTTTTTTTCTAATGGTGTTACGTGATTTCAGCTCTCTCAAAATTAGTCAGTTTTTCCCATTTACAGCTCTGAAATTAATTTCTTTTTTTTCCTTAAAAAAACATTTTTAGTGCATTCTAATTACACACTATATGATCAAAATTTATAGATCACATATGGTATTCTTTTTTTTTTTTTTTTTAGCCATCTATGCATACCGAAGCAAATACTTGA

mRNA sequence

ACTTTCTTCTTCCGAAGATGTTGAAGAAAGTTAAGAGCCAGAAGAACCAAGGGAGGCAGACCAAGGACAAACCGGCGACGGGTAGCCAAGCGGTAGTTTCGGTCTCAGGGAGGATCATGTACATCAAAAGACAACCACCGCCGCTGACAATGGAAAAGAAGAGAAAGCAAGTGACGATCCATATGAATGCACGTCCAGCTGAGGGATTCACCAAAGACATTAATTTGGCGTTTGAAAGATTGAAGAAGAAGAAGAAGAAAAGTTTGCGGAGAGATCCTCAAGAGTTTCTGTATGGAGAAGAAACACAATATCTAATTTACAACTATTTTGGTCAACCATCTATGCATACCGAAGCAAATACTTGA

Coding sequence (CDS)

ATGTTGAAGAAAGTTAAGAGCCAGAAGAACCAAGGGAGGCAGACCAAGGACAAACCGGCGACGGGTAGCCAAGCGGTAGTTTCGGTCTCAGGGAGGATCATGTACATCAAAAGACAACCACCGCCGCTGACAATGGAAAAGAAGAGAAAGCAAGTGACGATCCATATGAATGCACGTCCAGCTGAGGGATTCACCAAAGACATTAATTTGGCGTTTGAAAGATTGAAGAAGAAGAAGAAGAAAAGTTTGCGGAGAGATCCTCAAGAGTTTCTGTATGGAGAAGAAACACAATATCTAATTTACAACTATTTTGGTCAACCATCTATGCATACCGAAGCAAATACTTGA

Protein sequence

MLKKVKSQKNQGRQTKDKPATGSQAVVSVSGRIMYIKRQPPPLTMEKKRKQVTIHMNARPAEGFTKDINLAFERLKKKKKKSLRRDPQEFLYGEETQYLIYNYFGQPSMHTEANT

Homology

[Close]

BLAST of CcUC02G017470 vs. NCBI nr
Match: KAF7840133.1 (uncharacterized protein G2W53_008615 [Senna tora])

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-05
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 1  MLKKVKSQKNQGRQTKDKPATGSQAVVSVSGRIMYIKRQPPPLTMEKKRKQVTIHMNARP 60
          + KKV+ Q  QGRQT   P+TGSQ     SG I Y  RQ PP TM++KR   T+HM ARP
Sbjct: 3  LYKKVRIQNAQGRQTSVTPSTGSQDATWSSGSIKYAARQTPPETMQRKRMHETVHMYARP 62

[Close]

BLAST of CcUC02G017470 vs. ExPASy TrEMBL
Match: A0A803PIN9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.9e-09
Identity = 37/59 (62.71%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 5  VKSQKNQGRQTKDKPATGSQAVVSVSGRIMYIKRQPPPLTMEKKRKQVTIHMNARPAEG 64
          V+SQK+QGRQT   P TGS  VV VSG+IMYI RQPPP  M + R     HMNARPA G
Sbjct: 17 VESQKSQGRQTNVIPTTGSHEVVFVSGKIMYIMRQPPPPAMVRNRNHEITHMNARPALG 75

The following BLAST results are available for this feature:

BLAST of CcUC02G017470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7840133.1	1.5e-05	53.33	uncharacterized protein G2W53_008615 [Senna tora]	[more]

BLAST of CcUC02G017470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC02G017470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803PIN9	6.9e-09	62.71	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of CcUC02G017470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G017470.1	CcUC02G017470.1	mRNA