CcUC02G017390 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC02G017390
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RNA polymerase I-specific transcription initiation factor RRN3
Location	CicolChr02: 300896 .. 312323 (-)
RNA-Seq Expression	CcUC02G017390
Synteny	CcUC02G017390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAATTAAATTAAACGTCCACAGCCGGTTAGCCCCCTCCCTCGCGGGCGGTCTCTCTCTCTCGATATCTTTCTCTCACGCTCACTTCCCGCGCCGCCGCCACGTCCTGCTGACCGTCGAACGCCGCTGCTCGCCTCCGTCAAACCGCCGCACGTTGCGGCCTGAGGACCCACCGGTGGTGGGCCTTCTTTTCTTTATTTTCCAGTCTCTTTCTCCCTCTCTCACTCTCTCTGTGCAGCCGCCACCCACCCCGCCGCGGGCTTCCTTTTTGTCCGCTGGCAAGTGATTTTGGAATTTTGGGTTGTTTCTGGAATGAATCTTGACTACTCATTGCGTTTGTCATTTCTTTTTTTATATAATTTACCATAACATTTAGGTGTTAAATTGGAATTTTGGAGGTTTTTTAGGTGCTGTCCAGCAGCGGTGAAGGGATTTCGTCAACAATTTTAGGTGAGAGTTTGCAATTACTTTTGAATGCATTATAATTATGGTAGCTTGGACCCTAAATTTTAAATTTTCATTGTGCTCAGAGTTTGTTATTTCATTGAAGCCAGAAGACTGATTTTGTTGGAAGGACTTCTTAAGTGAAATTATAGTATAAGTTAGGCTCTAAAGATTGAGTTTTGTTTAGATACTGTTGTAGGTTATTTTCTTAGTACTTGGCTTTATTTTGAGGTAAGTGGTGTCACGGTCATACTTCTCCAACCGTGTGGCGCCATGACATTCTCTCTCGATCATGGCCAGCCTAAAGGCTAACTCATAGCCAATACATTATTTTCTCAAGTAATTATGCTTGATCGGACCTTGGGCGAGGTTCTAACTCCCTCAACCGAGCTTCTACTCCTCTGGCTTCATGACTTGTCTCGAACGTCCACTTGACTTATCGCACCCGTGAGCATCATTTCGCTCATCAACGGCTCTGTCTCGAAGAGTGTTCACAACTCAACGTTTACACCCTGATTTACTCTCGGCCATGTACGTCGCCCCTTCGTACATTTCAATACTGCCAACCATCTAAACCGGCTGCCTCGACTCAACCTTGCCTTTGCTCTTTGGCTAAGGTATATCGACGGGCCAACATATCTTTCCTTCACCGTAGCTCTCGACCATTCAGCCGTCCCATATCTTCCACCGAGGTAGGACGTCCCCGAGATGAGCCCTGGCTCCTCACAAGACCAGGACTACTTGTAAAGTTCTCTTTTAGATACATGCACGCTCATCGAGAACCGACCCTTGGGTCGTTGTATTTATCGGGACCAATTGGACATCCATCAACTCGAACATTATCTTGATATGATGACACTTGCGACCATACCATGTCGTTTGAGAATACATGCCAGAAGCCGGCTGTATAGCAATCTCTAGTCCACCCGAGAAGTCGCAATGTCGGCATACCCGTGCCACCCGATACTGTCCTTGAGTTACTCCTCCTCACAGGAAGATGCCCGAGATGCTCGTCTCTTGACACTCGCCCACGCCATAACACACTTGTGTGCCATGTGGTAGCTCACTTAGGCCCTAAGGTCCAGAGGTGGTGTAGAGCCAACACCATACCTTCCCCCTATAGTACATTATGAACATTTCCTTCTTTGACAGGCTTGCATGTGGTGTGTGGCGAAACGTCACTCGCTGTCGTGGAGCGCCCGTTTGAACTTCGATTCTTAAGAAATCTGACAGGCTTGCATCTTTTACTTTAATGCACATAACTCCAGAGTCGTTCGTCCAAACTTACAAGACTTTTGGGGCAACAACCTGGGACCCAACCTGGTCCCCAAAATCGTGTCATCGACCTTTCGAACACTACTATACTGCTAACTCATTCATGTCATAACTTAATGCTTCTGTGTACCTCATCCTTGGTGTGTTAGATGGTGCACTGTCTTCCTTGGTCGCATCATGACCCTTCTTTTGGTCCTCTATTATTGCCAGATGTGCTAACACACTTGTCTCGCCACTGCACTGTCTGCACAAATGGGGTCACAATCTACTATCTCAAAGTTAGTTTGTGACAAGTGACACTACTACTGGAATTTTCTATCCAGTAGTAGAGACATCAAAATTGAAATGATAATGTTGTTGGCCGTCATCCTGAATGTTGGCATGATGGATGTTGACTAAGCATTGCTTCTCATGTGTTTGATTATGATAATTTATGAATGATAGCCATGTACAATATTTTAGCATCACTTGTGATTTTATGTGGAACCTCATGTACGTGTGTATGTTCATGAAGTTACGAACTTGATACGTATTATCCCTAGAATGGCTAAGTTTTCCACCTAGAATGGCGAAGTTCTAGAATGGAATGTGGATGGCTAAGTTTATGCCTAGAATGGCGAAGTTCTAGCCTGCAATGGTTAAGTTCTGGTTGGGTTTGACTAAATCTTAGGTCCCACCAGTTTAAAGATTTTCACACTCATGATTGCATGTGTTTGCATAGCCTAACTCCAATGGTGGGGTTATTGACTGAGTATTTTAAATAGTCAGCATTCTCTTTTTAACATTTTTCAGACAAAGGCGAGAACGTACCGGGTGCTTGACGAGGTATTTTTTTATGGTGCCACGGGACTAGAGTCATTGCTTTTGCTTCTTCTTATGTTTTCGAGATGGTGTTGTTTTGATTTAAGTCTTTGAGTTAGTAGTTTGACACTGGTTTTTTTTTTTTTTCATTGCATTAACATTTTCAGGGATTACGGACTAAAATTTTGTTTTGACATACATTAAACTGATTTATTGATGTTTTATTTATTTAGTAAATTTTATTTTAAGTTAAATGATCATTTGGTCTTTGTCATGAAATTGCATGCATTTTGATTTAGTAATGACCCTAGTAAGAGGTCTCTGAAAGTTGGATACTTACAAGAAAATTTATTTTGGTCTGAATGAAATGTTTCAATGATGTTCCTAATATTTACTCATTTTCTCTAAACCAAACTTTTCCTCCCAGTTGGTCTTGAGTTTGAGTTATCATGCATGAAGTAATGACCTTGGTTATTACTATTTTTTTCCTAATTAATTTGTTTGAATCTTTTGTTCACTCGTTCTTATGTTTCAGGTTTGAACCTCGTCCTGTTCCCGTGCCCCATTGTGGCAATAGGATCTTAATAGGGTTTGGCATTAATCATGGGGGTGGAATTGGAAAATGGTCAAGCTCAGTTGCACGATATGGAGGGTGTTAATCTCACAGATGCCCAGTTAGTGGATTTCATTAGGGGGTTTCTTAGTTCAGTGTCGCTGGTATTGTTCTCTTAACATCGTTATTGGTATTTGCTTAAAAAAGAGCGCATTCGAATTTTGAATTGCACTCTGTTAGTTTATTATTCTGGTTGGATATGCTTTTGAGTTCTCACTGCTAATCATCTTGTTTTGTGAGGAATAACTGTAGTAACCTTATGATAGCTCTTCCATTGGTGTAGGGAGATAATGATGGGTATAACCAGCTTGTTGGTGTTATACACCACAGGGATCGACTAACCCCTGATGAGGTTGCCTTGCTCGTGGTATGTCCTCTACATCACATCTGTTTTTGACCAATGATAAGAGATGTAATTTCGTACTAAATACTATCTAATTTTTAACTCACTTGATGTGCTTAACAGACATGTCTGAAGGCACTATCTGGAGCAGTTTCTTGTATAGATATCGTTCTCCATGAATCTCTTCTTGCAGCAGTAAGTTTATCACTGAACTCCGAATCATTATCCTGCAATTTCATTGTTGTAATGGAAGTTCTTTCTCAGATTTTTAAAATGAGCTTGTGGGATTATGGACCTAACGTGATGGATGTCCTGATTGAACTAATAATATCCCTGGTATGAGCATTTATGGTAATAGAACTCTCACACTCTTTCTCAAGGTTCACCTAATAGTTCCAAGAACTTGTGTCTTTTTGTCTATTCAATGTTTCAGGCTGTTTCAAGTGGAAAATATGTGGATTCATGCTTGGATATGCTTGTAAATAATTTCATACCGCCCTATTCCTTCAAGGATTTCCTGAAGAAACCACATGGGCTTACCAGAAAGGATGAAGTTCTTTCTCGAGTGCACGCAGCTCTAAAAGACATCTCGGACTTGGTGCCTCTTGCACCCTTGAGATTACAGCAGATAGTTGTCCATAAAATGCAGAGAGTCTTTTTCAAAGAATCTGTGAGTTGAATTTTCATGGGCTAAAAGTTGCCCAAGAGAAATCTAAATGAAAATTGTGTTTATTTCTAATAGTCATTTTTATCTTTTTTTTTTAAAAAATTGCTAATTTTGGTTTTTTATTTTTCTACGATTCTTTTCTTTTCACGACTATCAATTCAATGACAATTGGAAGTTTGGTGTAAAGCTGAAAGCCCGTTATTTGTTTGCATGCTTTGGCACACTGAAGTATTAGATGGCATCGTTAAAATACCTACCGGATATAGTTCAAACTAGAACAATGCCCGATTATGATTTATAGTTGACATGCAGTGTATATTTACTAGATGCTATATTTGTACAATCTTTGAACCTACGAACTCCTCCTAAATTTTGTGAATAAATTTGTTCTTACGATCCAAATAGCTATAGGCCATTTAAAGAGTCAGGTATCATAAAGATGGCTACATTTTCAAAAGCCCTGAACTTGAAATTTTTTACAGATGCTTCTTGCTTGCTTAGAAGAGAGATGCTTTGATTTCTTTTTGGAATATTTTTGAAAAACTCATCGCCATATTTCATCTTCAAAACATCTGCACTCTTTGTTAGGAATTTGTTTTATGATTGTGTGATTTTGTCTAACACTTACATCTGTTTAATCTCTCTGTAGTTGACCACGATATATGTAGAAAACATGTTGAGGTTGGAGAAAGGTGCAATGAGTGAATTTGTTGGGAGAAAGATCTTAACTGCGCTGGTGGATAAGCTTTTAGATTTGGATGTAAGTTGAAAGTTGAAACAAATATTTTACTGGACTGACGTTTGTTTATGTGGTTACTTTATCATTAATATTAATGAGTTCTAACCTTCTGGTAGGTGGAGATTGGGTGGGATGATATCCTACAAGATGATTTCAGTAAAGGAATTTTTGAGATGGAACTTGAAGATGATGATGAAACTACAGATGATATTAATGAGGATTCTAGTGAGGTATGATTATTTAATATCTAGGCTGGATTAAAAAACTAAAATGTATAAGAAAAAAAAAGAAGGATATTTCTTCAACTAAGTTGTAATGTACTTAATCTCTTTCTTGGCTTTTCTTTTTTTTTTTTGTTTTGGAGAATTGTGGTTGGCAAATTGGCAATCAATGTTTTAAAATGCCATCGAGGCTTATGCCTTGAGGCTCACCTCTAGGCAAGACTAACTTTTTCCTTGAGATTTACATATTCATTGAACTAGAACACATATTCATTGAACTAGAAGAGGCTCCTTGGTAATAATGCATTGAGGCTTAAAATTGTTACGCCTCGTGTAATGATTAGAAGAATAATATTGATTTATGTCATTCTTTAAAAATATAGAGGTTTGAGTTGTGACACTTTGGACTATTACTACTTTTAGCAATGTGACTTTGAAAATATTGAATACAATAAATTAGAGTCTTAGTCAATCCTATTAATGATAATAGTAGGGATGTTATAGATATCATTTTAAAATATTTTTGCTTAAGTGGCAATTGATGGAGTGAGCTTCTTATACTTTTATGACTATCATTTTTAACTTGGTCATTCCAATTTAAGCTTTGTAAAATGTTTTTAATTAAATTTGAGGCCTCTTCAAGAGGAAAAGCCTCCCGTCTACCTTTGGTCTTTTAAAGCAATTTGGCATTTGATTCATTATATGCTTTTATGTTTAAATTCTAGTCTTCTAGTATATGAAGTAATGAATATGAAGTATATTCTACCAAAGCGAGCTTAGCTCGGCAGTAATTGGCATGACCTTCCATACTAGAGGATTTGAAGTATATTCCTTGGCTTGAAGCTAATTATCTTTTGAGTCTACACAGTTTATGCTAGTCAGTTTCTTAATTCACATTTTGCCTTTTCTGCCATACATTTCAATACTTCTTTTAATTCATGTCATTATTTGCTTGGCTGATTTGAAGTTTATTTTGCTAGCTTCCAAGAGAACTAAGTCGTAAGAGCTTAGGTGGAAATGTAATTGCTGAAACGTTAGATAGCTTGATTGTTCTAACATTTGAACATCTTGAATCATGTGAACGTGATGGACGATTGAATGAGGTACCTTGTGTAGTTTACGTAATTTTCCATTTTTTTGTTCTCAATCTCTTTGTTTTACTCTGCAAATGAGAATTTTTTCCATGTACGTTTGATGTGGTGGTTAGGTTTTTGACATTTTACTCCTATCATTCCAAAGAACTGTTCTGACTGCTTACAAGTCTAAATTTGCCCAGGTAATTAACATGCCCTCGCTATTCTCAATTGCTTATTTACTCTGGTTTAGTGGGCTCTCATTTTGTATCATTTTTCTTGTTTATGGAGATTGAATGACTTGGCGGTTTTTCTTTTGATGCCTTTTCTTGGCAGTTTGTCATATTCTATGCTTGTGCATTAGATCCTGAAGTTTGTGGTACGAGATTTGCGGTTTGGCTAGCAGATATGTTTGTTTCCTGCAATGATCCTCCACTTACCAGGTATTAGCAATTCATTAGAAAGCTCTCTCTCTTTTGGATAAGAAACAGATTTTGTTAGTTAATTTTGCCTTTGAGAGCTATGTTTCACTAGCGTTTGAAAGCTTCATAAAAGATCTGAATGTGGGATCAACATAGTTTATTTTTCCTCTGCTTTTTACAACACTTTCTTTGCTCATTTCTTGTCCATTTATTAGCCATTTAAATTGAATCTCATTTGCAAGGTCTTACTCATCTAAGAAATCTACAACTAACAAGTATGGGGATTGAGTTTCTCTCTCTCTTCCTCTCTCTCTCTTCCTCTCTCTCTCTTATTATTATTATTGTTAATTTATTCGGTTTTAAGGTTTATGGTTTCTTCTATCTATCTATCTAAGAAAATAAAAGAAATCACACTTTAAATAGAAAATTTTACGCCTGCAGGAGCCTGTCAAAACTTGTACTACCGTAGAGGTTTAAATGTTTTGGATTTGAGATGGGAAGAAAGCAAGTAGTTACTTAGGAATTCTATCTGATTTATGTCAATTGTTTGGTAGCCTTGTACGTGAAATATAATTTTACAACATCACTCTGTTTCATACACAAGTGGTCCCCAATTTGAACCTGGGCTCAAACACATGTTTTCATTTTTTTTTTTTTTAATATAAAAATGAAATTAAATAATATATTTTTGAGCCTGGTTTGAACCTGAGCTCAAAAATGTCTTCCTGTTTTTCTAATATAAAAATGAAATTAAAGATGTGTTTGTGGTATTGTGCAGGATGAGTGCTGTTTCATATCTTGCGAGTTATTTATCTCGTGGGAAGTTTTTGTCAACCTCTTTGGTTACTACTATATTGAAAAGGTTAACTTGTCAACTTCAATTATCTTTCTGTGATGAAAAGTGTGAAACTGATAAAATTGAAGTAGGGAGGTTTTGTGGCTCTAAGTCTATTTTTGCTTCTAATTTTTTTCAGACTGGTGGATTGGTGTTTAGAATACGGCAGAACGCTGAATGTTGACCCGAACCCAAAGGCTCATAAAGTATTTTATTCTGGTTGCCAGGTATACAATGCTTCGACTCCTTTTTGCTAGACTAAGGCACGTGGGATTTGTTGAAAAACGAGGAAAAATGTTTATGCTTCTGGAAGTGCTGTTATTTGTACTTTTCAGTTATGCTTATGATGACTTAGATTTTTGTTTTGTTAAAACTAGGAAACAGATCTCGCTGATATTAATAAAATTCACAAGCCTTTTGTGGAATTACTTGAAAACAATCCAATTGGAAAATTTTAAAGAGTGTGAACAGTCATATCTGGGAGGATAAACTCTACAAGGAAGTGTAAAAAGGATTGGAATGCCTGACAGTCTCCCACATTATGACCATGGCCTCTTTGAAACTCCTTTGTTTCTATAATCAAATGTTTCAGAAGATCTAAATGCATTAGACCAGATATTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTTTTCCCCTTTTTTTTTCAACTGTGCACCCGTAGGGGGGAGGATATAAATCTTGACAAAGCCAATTGGACAGCTCTCACTAACAATTTAGTGGAAGTATTTGGCTGATAGTTTAGATTTGTGACTTGAGGATAAAATTATATTCGGCGAAGCACTTGCTTATCCTACATTATGTGTATTGCTAATTTCACAGGTATGGATCCACCTTTTATACTGAATTTTTAAAAATGAGTATCAATACTTTCATCAAGAAAATGGAAGAATTACAAATAACAAATGGACACTACGGAAAAACAACTCATCTAATATGAAAATTCAAGTCATCACAAAAGGAGCCAAAACAAAAATAACATAGGTTGAAGCCAAAAATGATGGTAAACGTTAAGTAAAAGGCTCTAATTATTATGGGAAATAGATGAGGATAAAAAGGAATTATTTGGTTCTTGCGAGCATCCCCTTATACTGTTTCTCGATTCTCTTGTCCTAACGTGTGCATTGGAGAAGTTGGTTAGGAATTTCTTTTGGAAAGGTAGCAAGGAGCTTGGTGCTTTCAATCTATTTAATTGGGAGACTACTTTTCTTCCGATTGATATTGGAGGGTTGGGCATTTGTGACTTTGTCAATAAGAATTGTGCTCTTCTAGCCAAATGGGGTTGAAGATTTCTCACTAAGAACGATGCTTTATAGAGTCTGGTGTTTGCTTATAAATACAAGTGGAATGAAACTCATTTGTGGCATACTATGAAAGGATCTCGTATGTTTAAAGGCCTTTGGCCCCAGGTCATGGAAAACATCCTCACTTCAGAGGAATGGTACGTAGTTAGAGTAGGTTGTGGTCTGTGAAGACATCTTGGTACTGGAAGCACAAATGGTTGGTTGACTCACCCCTTTGTTTGGAATTTCTTAGGCTAAGACTTGTGATTACCAAGGGTTTTGGTTTGTCGGGCTGGTCTTGTGTGTGAGATTTAAAGCTCCGAAGAAATTTCAGTGAGGTTGAGTTTGATGATTCGGTTTCTCTTTTGAATAAGCTTCAACATCTTAGATTGAATTACATGGATGGCGTGTTTGTGTGGTTGCTGGAAAATGATGGGTCCTTTTTGATTAAATCTTTCTCTCTCAAGCTCATTGTCAAACAACTTTAGAAAGGCAAAAATCTGAGCTTATTTGGTTATTCTTTCTGCTTCTACTTGGTCCTCTACTTCTAAATTCTTTGTAATTATAACCTAACCCAAATTTATACTTGGGCTCCCTTTTTGTAAGTTGTTATGTGGAGATACCTCATCTCCCCCTCTTTTTGTATCTTTCTCTTTGATAATGGAAGTTTTTTTTTTTCTTATAAAGAAAGTCTTCTTTATCATAGTAATTTTTGGTTGATTTTGAATATAGATCCTTTCCATTTTTATTTATACTTTGATTAAAAGCCTGTATTATTCTTTTTTAAAAAGTCCATTTGGGAGGAATGGAGTAGTATTTTTCTCGTTACTTTCCCACTCCAACCCCATTAACATGGGGAAAAAAATTTAACCTCTGAGATTATTGTTATCTAATTTCCACCCACTGAAAAAGCAAGGGGTCAACTGGCAAACCTTAAAATGGCTTTTAATTTTTTTTTATTTTATAATTAGTATGTTAAATTCTCTCTCGTTGAACCCTTAAGAAATGAAACTGCACTTTGAAATATTGATTCAATTCTAACACTGAGAATTGCTTCTTGGAGGATAAATTTCATGGATGTTTGGTCAATTAGAAAATCTGGCGTACTAGCAGTTTTTTTGTTTTCTAGATTTAGAACCTTTTTTTTAATGATTCTTTCCACAGGCCATAATGTATGTGCTTTGCTTCCGGATGAGGTCCATTTTGGAGATTCCACGTCTGAAGTCACAACTTCTGCTTATGCCTATAGGTCCAGTCTTGACGCATAGATTAAGCCCACTGAAGGTGGGTAATTGGTTGACCCCTTGATTTTTGGTGGTTTTTGTTTTGTTATAAATTTGTCTGTTCGTTGTTCCTTTTCCTTGAAATCTGTTTACGTTCTGATAATTGAGTAACCATCGGGACTATGAGATGTGTGAAGCATCAAATTTGAAACTTCATTACTTTTCAATTGATGCGATAATAACATTTATCTCCCTCATGGACATCTACCCATGCATTAAGTTACAATTGTTTGGAAGTTCATATTTTGGCCTTGGAGCTTTACATCATTAATTTGTAATTGCAACTCCTCTCCAGTGCCTCATAATATCGAATCTATACATCTGGGCTATAGTAGTGATGCTGTGTTATTAACCTCCAAAAAGATTAACTACCGTCTGAAGCTCTGTTGTGTGCAATTTTTCTTATATGCATATTATTTTAACGCCTTTTTGTTTAACAGGTTTGCCTACCATCTATTGTTGAGGAATTTCTTCGGCAGGCAAAAGTTGCTAATTTATTTTCACCATCAGAGACTTTTATATTCAGTGGTTTGCTGGAGTCTGAATATTCAAAGACTTTTGGTGGGATAGAAAGGCTCGACATGTTTTTTCCGTTTGACCCTTGCTTATTGAAAACATGTGACAGGTTTTCACTCTTATTAGTCTTGATCTTCTTTATTTCTTGTTTAAGACAACAAATGAAGGATAGATAAAACCATTATAAAAATGGATACGCACAGAAGAATGACTGATTGGAATGAGTGGGAACGTTGAGAACTTGGTGGTGTAGGAAATAGGAATGTTTCGTTTGATTCATTTTGTGGAATTATTAACTCATGCTTTATCGTTCCCTTTTGTTTATGAAGATATCTACGGCCACATTTTGTATATTGGTCGATGGTCAGGCCTACCTATGATGAAGAAGAAGGTGGAGGTAGCAGTGATGAAGATATTGCAGAAGTTTTTCGAGATAGAATTGAGAACAACCTTATGGACGATGAAGCAATGGCAAGAAGCTATGACGATGGAGAATTTGATCTTGATGAATTTGATTCTGCATTAAACAAAATGTCCATCACACCAAGAAATTCTCTTCAGTACCGGCGAGATTTTGTTCAAATGCCCTCACGCATCCAACCCTCGATGAGTCCAGAATCTTTGTGATAAAGATCTCACAGTTTGAATAGTTAACTGGAATGCAAGTGAGAATGGCTGGGCTGACATATTTCCATGAAGATGGTGATTGCAAATCTAGGTTGGGGTTCTGGGATCTGTCTTGTTTATATATAAATAGGTCGGTTGGAATTGGTGGTGTTGGGGTTCAGTTTTGTTTTCCTCATTCCGTTTTCTAGCTGCCTTTGCTATTCTTTACTCTCCAGGCTTGTAACAATAGGAGTATGTGATCAAATACAGTCTAAATTTTGCTCG

mRNA sequence

AAAAAAAATTAAATTAAACGTCCACAGCCGGTTAGCCCCCTCCCTCGCGGGCGGTCTCTCTCTCTCGATATCTTTCTCTCACGCTCACTTCCCGCGCCGCCGCCACGTCCTGCTGACCGTCGAACGCCGCTGCTCGCCTCCGTCAAACCGCCGCACGTTGCGGCCTGAGGACCCACCGGTGGTGGGCCTTCTTTTCTTTATTTTCCAGTCTCTTTCTCCCTCTCTCACTCTCTCTGTGCAGCCGCCACCCACCCCGCCGCGGGCTTCCTTTTTGTCCGCTGGCAAGTGATTTTGGAATTTTGGGTTGTTTCTGGAATGAATCTTGACTACTCATTGCGTTTGTCATTTCTTTTTTTATATAATTTACCATAACATTTAGGTGTTAAATTGGAATTTTGGAGGTTTTTTAGGTGCTGTCCAGCAGCGGTGAAGGGATTTCGTCAACAATTTTAGACAAAGGCGAGAACGTACCGGGTGCTTGACGAGGTTTGAACCTCGTCCTGTTCCCGTGCCCCATTGTGGCAATAGGATCTTAATAGGGTTTGGCATTAATCATGGGGGTGGAATTGGAAAATGGTCAAGCTCAGTTGCACGATATGGAGGGTGTTAATCTCACAGATGCCCAGTTAGTGGATTTCATTAGGGGGTTTCTTAGTTCAGTGTCGCTGGGAGATAATGATGGGTATAACCAGCTTGTTGGTGTTATACACCACAGGGATCGACTAACCCCTGATGAGGTTGCCTTGCTCGTGACATGTCTGAAGGCACTATCTGGAGCAGTTTCTTGTATAGATATCGTTCTCCATGAATCTCTTCTTGCAGCAGTAAGTTTATCACTGAACTCCGAATCATTATCCTGCAATTTCATTGTTGTAATGGAAGTTCTTTCTCAGATTTTTAAAATGAGCTTGTGGGATTATGGACCTAACGTGATGGATGTCCTGATTGAACTAATAATATCCCTGGCTGTTTCAAGTGGAAAATATGTGGATTCATGCTTGGATATGCTTGTAAATAATTTCATACCGCCCTATTCCTTCAAGGATTTCCTGAAGAAACCACATGGGCTTACCAGAAAGGATGAAGTTCTTTCTCGAGTGCACGCAGCTCTAAAAGACATCTCGGACTTGGTGCCTCTTGCACCCTTGAGATTACAGCAGATAGTTGTCCATAAAATGCAGAGAGTCTTTTTCAAAGAATCTTTGACCACGATATATGTAGAAAACATGTTGAGGTTGGAGAAAGGTGCAATGAGTGAATTTGTTGGGAGAAAGATCTTAACTGCGCTGGTGGATAAGCTTTTAGATTTGGATGTGGAGATTGGGTGGGATGATATCCTACAAGATGATTTCAGTAAAGGAATTTTTGAGATGGAACTTGAAGATGATGATGAAACTACAGATGATATTAATGAGGATTCTAGTGAGCTTCCAAGAGAACTAAGTCGTAAGAGCTTAGGTGGAAATGTAATTGCTGAAACGTTAGATAGCTTGATTGTTCTAACATTTGAACATCTTGAATCATGTGAACGTGATGGACGATTGAATGAGGTTTTTGACATTTTACTCCTATCATTCCAAAGAACTGTTCTGACTGCTTACAAGTCTAAATTTGCCCAGTTTGTCATATTCTATGCTTGTGCATTAGATCCTGAAGTTTGTGGTACGAGATTTGCGGTTTGGCTAGCAGATATGTTTGTTTCCTGCAATGATCCTCCACTTACCAGGATGAGTGCTGTTTCATATCTTGCGAGTTATTTATCTCGTGGGAAGTTTTTGTCAACCTCTTTGGTTACTACTATATTGAAAAGACTGGTGGATTGGTGTTTAGAATACGGCAGAACGCTGAATGTTGACCCGAACCCAAAGGCTCATAAAGTATTTTATTCTGGTTGCCAGGCCATAATGTATGTGCTTTGCTTCCGGATGAGGTCCATTTTGGAGATTCCACGTCTGAAGTCACAACTTCTGCTTATGCCTATAGGTCCAGTCTTGACGCATAGATTAAGCCCACTGAAGGTTTGCCTACCATCTATTGTTGAGGAATTTCTTCGGCAGGCAAAAGTTGCTAATTTATTTTCACCATCAGAGACTTTTATATTCAGTGGTTTGCTGGAGTCTGAATATTCAAAGACTTTTGGTGGGATAGAAAGGCTCGACATGTTTTTTCCGTTTGACCCTTGCTTATTGAAAACATGTGACAGATATCTACGGCCACATTTTGTATATTGGTCGATGGTCAGGCCTACCTATGATGAAGAAGAAGGTGGAGGTAGCAGTGATGAAGATATTGCAGAAGTTTTTCGAGATAGAATTGAGAACAACCTTATGGACGATGAAGCAATGGCAAGAAGCTATGACGATGGAGAATTTGATCTTGATGAATTTGATTCTGCATTAAACAAAATGTCCATCACACCAAGAAATTCTCTTCAGTACCGGCGAGATTTTGTTCAAATGCCCTCACGCATCCAACCCTCGATGAGTCCAGAATCTTTGTGATAAAGATCTCACAGTTTGAATAGTTAACTGGAATGCAAGTGAGAATGGCTGGGCTGACATATTTCCATGAAGATGGTGATTGCAAATCTAGGTTGGGGTTCTGGGATCTGTCTTGTTTATATATAAATAGGTCGGTTGGAATTGGTGGTGTTGGGGTTCAGTTTTGTTTTCCTCATTCCGTTTTCTAGCTGCCTTTGCTATTCTTTACTCTCCAGGCTTGTAACAATAGGAGTATGTGATCAAATACAGTCTAAATTTTGCTCG

Coding sequence (CDS)

ATGGGGGTGGAATTGGAAAATGGTCAAGCTCAGTTGCACGATATGGAGGGTGTTAATCTCACAGATGCCCAGTTAGTGGATTTCATTAGGGGGTTTCTTAGTTCAGTGTCGCTGGGAGATAATGATGGGTATAACCAGCTTGTTGGTGTTATACACCACAGGGATCGACTAACCCCTGATGAGGTTGCCTTGCTCGTGACATGTCTGAAGGCACTATCTGGAGCAGTTTCTTGTATAGATATCGTTCTCCATGAATCTCTTCTTGCAGCAGTAAGTTTATCACTGAACTCCGAATCATTATCCTGCAATTTCATTGTTGTAATGGAAGTTCTTTCTCAGATTTTTAAAATGAGCTTGTGGGATTATGGACCTAACGTGATGGATGTCCTGATTGAACTAATAATATCCCTGGCTGTTTCAAGTGGAAAATATGTGGATTCATGCTTGGATATGCTTGTAAATAATTTCATACCGCCCTATTCCTTCAAGGATTTCCTGAAGAAACCACATGGGCTTACCAGAAAGGATGAAGTTCTTTCTCGAGTGCACGCAGCTCTAAAAGACATCTCGGACTTGGTGCCTCTTGCACCCTTGAGATTACAGCAGATAGTTGTCCATAAAATGCAGAGAGTCTTTTTCAAAGAATCTTTGACCACGATATATGTAGAAAACATGTTGAGGTTGGAGAAAGGTGCAATGAGTGAATTTGTTGGGAGAAAGATCTTAACTGCGCTGGTGGATAAGCTTTTAGATTTGGATGTGGAGATTGGGTGGGATGATATCCTACAAGATGATTTCAGTAAAGGAATTTTTGAGATGGAACTTGAAGATGATGATGAAACTACAGATGATATTAATGAGGATTCTAGTGAGCTTCCAAGAGAACTAAGTCGTAAGAGCTTAGGTGGAAATGTAATTGCTGAAACGTTAGATAGCTTGATTGTTCTAACATTTGAACATCTTGAATCATGTGAACGTGATGGACGATTGAATGAGGTTTTTGACATTTTACTCCTATCATTCCAAAGAACTGTTCTGACTGCTTACAAGTCTAAATTTGCCCAGTTTGTCATATTCTATGCTTGTGCATTAGATCCTGAAGTTTGTGGTACGAGATTTGCGGTTTGGCTAGCAGATATGTTTGTTTCCTGCAATGATCCTCCACTTACCAGGATGAGTGCTGTTTCATATCTTGCGAGTTATTTATCTCGTGGGAAGTTTTTGTCAACCTCTTTGGTTACTACTATATTGAAAAGACTGGTGGATTGGTGTTTAGAATACGGCAGAACGCTGAATGTTGACCCGAACCCAAAGGCTCATAAAGTATTTTATTCTGGTTGCCAGGCCATAATGTATGTGCTTTGCTTCCGGATGAGGTCCATTTTGGAGATTCCACGTCTGAAGTCACAACTTCTGCTTATGCCTATAGGTCCAGTCTTGACGCATAGATTAAGCCCACTGAAGGTTTGCCTACCATCTATTGTTGAGGAATTTCTTCGGCAGGCAAAAGTTGCTAATTTATTTTCACCATCAGAGACTTTTATATTCAGTGGTTTGCTGGAGTCTGAATATTCAAAGACTTTTGGTGGGATAGAAAGGCTCGACATGTTTTTTCCGTTTGACCCTTGCTTATTGAAAACATGTGACAGATATCTACGGCCACATTTTGTATATTGGTCGATGGTCAGGCCTACCTATGATGAAGAAGAAGGTGGAGGTAGCAGTGATGAAGATATTGCAGAAGTTTTTCGAGATAGAATTGAGAACAACCTTATGGACGATGAAGCAATGGCAAGAAGCTATGACGATGGAGAATTTGATCTTGATGAATTTGATTCTGCATTAAACAAAATGTCCATCACACCAAGAAATTCTCTTCAGTACCGGCGAGATTTTGTTCAAATGCCCTCACGCATCCAACCCTCGATGAGTCCAGAATCTTTGTGA

Protein sequence

MGVELENGQAQLHDMEGVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLVGVIHHRDRLTPDEVALLVTCLKALSGAVSCIDIVLHESLLAAVSLSLNSESLSCNFIVVMEVLSQIFKMSLWDYGPNVMDVLIELIISLAVSSGKYVDSCLDMLVNNFIPPYSFKDFLKKPHGLTRKDEVLSRVHAALKDISDLVPLAPLRLQQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKSLGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPEVCGTRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGRTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKVCLPSIVEEFLRQAKVANLFSPSETFIFSGLLESEYSKTFGGIERLDMFFPFDPCLLKTCDRYLRPHFVYWSMVRPTYDEEEGGGSSDEDIAEVFRDRIENNLMDDEAMARSYDDGEFDLDEFDSALNKMSITPRNSLQYRRDFVQMPSRIQPSMSPESL

Homology

[Close]

BLAST of CcUC02G017390 vs. NCBI nr
Match: KAA0048966.1 (RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo var. makuwa])

HSP 1 Score: 1157.5 bits (2993), Expect = 0.0e+00
Identity = 594/652 (91.10%), Postives = 620/652 (95.09%), Query Frame = 0


Query: 1   MGVELENGQAQLHDMEGVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLVGVIHHRDRLTPD 60
           MG ELEN QAQLHDME VNLTDAQLVDFIRGFLSSVSLGD DGYNQLVGVIHHRDRL+PD
Sbjct: 1   MGAELENNQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIVLHESLLAAVSLSLNSESLSCNFIVVMEVLSQIFKMSLW 120
           EVALLVTCLKALSGAVSCIDI+ HESLLAAVSL LNSESLSCNF+VVMEVLSQIFKMSLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDIIQHESLLAAVSLCLNSESLSCNFVVVMEVLSQIFKMSLW 120

Query: 121 DYGPNVMDVLIELIISLAVSSGKYVDSCLDMLVNNFIPPYSFKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD LIELIISLAVS+GKYV+SCLDMLVNNF+PP S+ DFLKKPHGLT+KDEVLS
Sbjct: 121 DYGPNVMDSLIELIISLAVSNGKYVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLS 180

Query: 181 RVHAALKDISDLVPLAPLRLQQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVH ALKDISDLVPLAPLRL+QIVVHKMQRVFFKESLTTIYVENMLRLEKGA+SEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKS 300
           ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSR+S
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRS 300

Query: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
           LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACALDPEVCGTRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           AC+LDPEVCG RFAV LADMFVSCNDPPL RMSAVSYLAS+LSRGKFL+TSLVTTILKRL
Sbjct: 361 ACSLDPEVCGARFAVSLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRL 420

Query: 421 VDWCLEYGRTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYG TLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+L
Sbjct: 421 VDWCLEYGETLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFSPSETFIFSGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFL+QAKVANLF+PSETFIF+GLLESEYS++FGG+ERLDMFFPF
Sbjct: 481 THRLSPLKVCLPSIVEEFLQQAKVANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPF 540

Query: 541 DPCLLKTCDRYLRPHFVYWSMVRPTY----DEEEGGGSSDEDIAEVFRDRIENNLMDDEA 600
           DPCLLK CDRYLRPHFVYWSMVRPTY    ++EE GGSSDED AEVF D IE NLMDD A
Sbjct: 541 DPCLLKKCDRYLRPHFVYWSMVRPTYAEEEEQEEDGGSSDED-AEVFPDIIEENLMDDVA 600

Query: 601 MARSYDDGEFDLDEFDSALNKMSITPRNSLQYRRDFVQMPSRIQPSMSPESL 649
           MARSYDD +FDL   DS LN MSITPRNSLQYR DFV+MPSRI+PSMSPESL
Sbjct: 601 MARSYDDQDFDL---DSGLNNMSITPRNSLQYRHDFVKMPSRIRPSMSPESL 648

[Close]

BLAST of CcUC02G017390 vs. NCBI nr
Match: XP_038901148.1 (RNA polymerase I-specific transcription initiation factor RRN3-like [Benincasa hispida])

HSP 1 Score: 1150.6 bits (2975), Expect = 0.0e+00
Identity = 585/648 (90.28%), Postives = 609/648 (93.98%), Query Frame = 0


Query: 1   MGVELENGQAQLHDMEGVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLVGVIHHRDRLTPD 60
           MGVELE GQAQLHDMEGVNLTDAQLVDF+RGFLSSVSLGDNDGYNQLVGVIHH+DRLTP+
Sbjct: 1   MGVELEKGQAQLHDMEGVNLTDAQLVDFVRGFLSSVSLGDNDGYNQLVGVIHHKDRLTPE 60

Query: 61  EVALLVTCLKALSGAVSCIDIVLHESLLAAVSLSLNSESLSCNFIVVMEVLSQIFKMSLW 120
           EVALLVTCLKALSGAVSCIDIVLHESLLAA                       IFK SLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDIVLHESLLAA-----------------------IFKRSLW 120

Query: 121 DYGPNVMDVLIELIISLAVSSGKYVDSCLDMLVNNFIPPYSFKDFLKKPHGLTRKDEVLS 180
           DYG NVMD LIELIISLAVSSGKYVDSCLDMLVNNF+PPYS+KDFLKKPHGLTRKDEVLS
Sbjct: 121 DYGRNVMDALIELIISLAVSSGKYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLS 180

Query: 181 RVHAALKDISDLVPLAPLRLQQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVH ALKDI DLVPLAPLRL+QIVVHKMQRVFFKESLTTIYVE+MLRLEKGAMSEFVGRK
Sbjct: 181 RVHTALKDILDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVESMLRLEKGAMSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKS 300
           ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMEL DDDETT+DINE SSELPRELSRKS
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELADDDETTEDINEASSELPRELSRKS 300

Query: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
           LGGN+IAETLDSLIVLTFEHLESCERDGRLNEVFD+LLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LGGNIIAETLDSLIVLTFEHLESCERDGRLNEVFDVLLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACALDPEVCGTRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           ACALDPEVCG RFAVWLADMFVSCNDPPLTRM AVSYLASYLSRGKFLSTSLVT ILKRL
Sbjct: 361 ACALDPEVCGARFAVWLADMFVSCNDPPLTRMKAVSYLASYLSRGKFLSTSLVTIILKRL 420

Query: 421 VDWCLEYGRTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYG+TL+VDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLL+PIGPVL
Sbjct: 421 VDWCLEYGKTLDVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLIPIGPVL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFSPSETFIFSGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFLRQA+VANLFSPSETFIF+GLLESEYS+TFGGIERLDMFFPF
Sbjct: 481 THRLSPLKVCLPSIVEEFLRQAEVANLFSPSETFIFNGLLESEYSQTFGGIERLDMFFPF 540

Query: 541 DPCLLKTCDRYLRPHFVYWSMVRPTYDEEEGGGSSDEDIAEVFRDRIENNLMDDEAMARS 600
           DPCLLKTCDRYLRPHFVYWSMVRPTYDEEE GGSSDED+AEVF DRIE NLMDDEA+ARS
Sbjct: 541 DPCLLKTCDRYLRPHFVYWSMVRPTYDEEEYGGSSDEDVAEVFPDRIEENLMDDEAVARS 600

Query: 601 YDDGEFDLDEFDSALNKMSITPRNSLQYRRDFVQMPSRIQPSMSPESL 649
           YDD +FDLDEFDSALN+MSITPRNSLQYRRDFVQMP +I+P++SPESL
Sbjct: 601 YDDRDFDLDEFDSALNEMSITPRNSLQYRRDFVQMPLQIRPTISPESL 625

[Close]

BLAST of CcUC02G017390 vs. NCBI nr
Match: XP_038896673.1 (RNA polymerase I-specific transcription initiation factor RRN3-like [Benincasa hispida])

HSP 1 Score: 1150.6 bits (2975), Expect = 0.0e+00
Identity = 586/648 (90.43%), Postives = 608/648 (93.83%), Query Frame = 0


Query: 1   MGVELENGQAQLHDMEGVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLVGVIHHRDRLTPD 60
           MG E ENGQAQLHDME VNLTDAQLVDFIRGFLSSVSLGDNDGYNQL+GVIHH+DRL+PD
Sbjct: 1   MGAEFENGQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLIGVIHHKDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIVLHESLLAAVSLSLNSESLSCNFIVVMEVLSQIFKMSLW 120
           E+ALLVTCLKALSGAVSCIDI+LHESLL+A                       IFKMSLW
Sbjct: 61  EIALLVTCLKALSGAVSCIDIILHESLLSA-----------------------IFKMSLW 120

Query: 121 DYGPNVMDVLIELIISLAVSSGKYVDSCLDMLVNNFIPPYSFKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD LIELIISLAVSSG YVDSCLDMLVNNF+PPYS+KDFLKKPHGLTRKDEVLS
Sbjct: 121 DYGPNVMDALIELIISLAVSSGNYVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLS 180

Query: 181 RVHAALKDISDLVPLAPLRLQQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVH ALKDISDLVPLAPLRL+QIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKS 300
           ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDET DD NEDSSELPRELSRKS
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETADDSNEDSSELPRELSRKS 300

Query: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
           LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACALDPEVCGTRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           ACAL PEVCG RFAV LADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVT+ILKRL
Sbjct: 361 ACALYPEVCGERFAVSLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTSILKRL 420

Query: 421 VDWCLEYGRTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYG+TL+V+PNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL
Sbjct: 421 VDWCLEYGKTLDVEPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFSPSETFIFSGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFLRQAKVANLF+PSET++F+GLLES+YS+TFGGIERLDMFFPF
Sbjct: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFTPSETYVFNGLLESDYSRTFGGIERLDMFFPF 540

Query: 541 DPCLLKTCDRYLRPHFVYWSMVRPTYDEEEG-GGSSDEDIAEVFRDRIENNLMDDEAMAR 600
           DPCLLK CDRYLRPHFVYWSMVRPTYDEEEG GGSSDED+AEVF DRIE NLMDDEAMAR
Sbjct: 541 DPCLLKKCDRYLRPHFVYWSMVRPTYDEEEGDGGSSDEDVAEVFPDRIEENLMDDEAMAR 600

Query: 601 SYDDGEFDLDEFDSALNKMSITPRNSLQYRRDFVQMPSRIQPSMSPES 648
           SYDD +FDLDEFDSALN MSITPRNSLQYRRDFVQMPSRI+PSMSPES
Sbjct: 601 SYDDQDFDLDEFDSALNNMSITPRNSLQYRRDFVQMPSRIRPSMSPES 625

[Close]

BLAST of CcUC02G017390 vs. NCBI nr
Match: KAG7035298.1 (RNA polymerase I-specific transcription initiation factor RRN3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1109.4 bits (2868), Expect = 0.0e+00
Identity = 571/653 (87.44%), Postives = 602/653 (92.19%), Query Frame = 0


Query: 1   MGVELENGQAQLHDMEGVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLVGVIHHRDRLTPD 60
           MG+ELENGQAQ  DMEGVN TD+QLVDFIRGFLSSVSLG+ DGYNQLVGVIHHR+RL+PD
Sbjct: 1   MGMELENGQAQFQDMEGVNFTDSQLVDFIRGFLSSVSLGNTDGYNQLVGVIHHRERLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIVLHESLLAAVSLSLNSESLSCNFIVVMEVLSQIFKMSLW 120
           EVALLVTCLKAL GAVS ID  LHESLLA VSLSLNS S+SCNF+VVMEVL QIFKMSLW
Sbjct: 61  EVALLVTCLKALCGAVSFIDNALHESLLAGVSLSLNSVSVSCNFVVVMEVLFQIFKMSLW 120

Query: 121 DYGPNVMDVLIELIISLAVSSGKYVDSCLDMLVNNFIPPYSFKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD L+ELI SLAVSSGKYVDSCLDMLVNNF+PP+ +KD LKKPHGL RKDEV S
Sbjct: 121 DYGPNVMDALVELITSLAVSSGKYVDSCLDMLVNNFMPPHYYKDLLKKPHGLIRKDEVFS 180

Query: 181 RVHAALKDISDLVPLAPLRLQQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVH ALKDISDLVPLAPLRL+QIVV+KMQRVFFKESLT++YVENMLRLEKG++SEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLEQIVVNKMQRVFFKESLTSVYVENMLRLEKGSLSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKS 300
           ILTALVDKLLDLDVEIGWDDILQDDFSKGIFE+ELEDDDE TDDINEDS ELP ELSRKS
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEIELEDDDEITDDINEDSIELPSELSRKS 300

Query: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
           L GNVIAETLDSLIVLTFEHLESCERDGRLNEVF+ILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LTGNVIAETLDSLIVLTFEHLESCERDGRLNEVFEILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACALDPEVCGTRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           ACALDPEVCG RFAV LADMF+SCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL
Sbjct: 361 ACALDPEVCGARFAVMLADMFISCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420

Query: 421 VDWCLEYGRTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYG+T +VD NPKAHK       AIMYVLCFRMRSILEIPRLKSQLLLMPIGP+L
Sbjct: 421 VDWCLEYGKTQHVDLNPKAHK-------AIMYVLCFRMRSILEIPRLKSQLLLMPIGPIL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFSPSETFIFSGLLESEYSKTFGGIERLDMFFPF 540
           THRL PLKVCLPSIVEEFLR+A  ANLF+PSETFIF+GLLESEYSKTFGG+ERLDMFFPF
Sbjct: 481 THRLGPLKVCLPSIVEEFLRKANDANLFTPSETFIFNGLLESEYSKTFGGMERLDMFFPF 540

Query: 541 DPCLLKTCDRYLRPHFVYWSMVRPTYDEEE-----GGGSSDEDIAEVFRDRIENNLMDDE 600
           DPCLLK CDRYLRP+FVYWSMVRP+YDEEE       GSSDED+AEVF DRIE NLMDDE
Sbjct: 541 DPCLLKRCDRYLRPYFVYWSMVRPSYDEEEDDDDDDDGSSDEDVAEVFPDRIEENLMDDE 600

Query: 601 AMARSYDDGEFDLDEFDSALNKMSITPRNSLQYRRDFVQMPSRIQPSMSPESL 649
           AMARSYDD EFDLDEFDSALNKMSITPRNS+QYRRD VQMPSRI PS SP SL
Sbjct: 601 AMARSYDDREFDLDEFDSALNKMSITPRNSIQYRRDSVQMPSRILPSTSPGSL 646

[Close]

BLAST of CcUC02G017390 vs. NCBI nr
Match: XP_008438040.1 (PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo] >XP_008438041.1 PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo] >XP_008438044.1 PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo] >TYK17601.1 RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo var. makuwa])

HSP 1 Score: 1107.4 bits (2863), Expect = 0.0e+00
Identity = 573/652 (87.88%), Postives = 598/652 (91.72%), Query Frame = 0


Query: 1   MGVELENGQAQLHDMEGVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLVGVIHHRDRLTPD 60
           MG ELEN QAQLHDME VNLTDAQLVDFIRGFLSSVSLGD DGYNQLVGVIHHRDRL+PD
Sbjct: 1   MGAELENNQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIVLHESLLAAVSLSLNSESLSCNFIVVMEVLSQIFKMSLW 120
           EVALLVTCLKALSGAVSCIDI+ HESLLAA                       IFKMSLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDIIQHESLLAA-----------------------IFKMSLW 120

Query: 121 DYGPNVMDVLIELIISLAVSSGKYVDSCLDMLVNNFIPPYSFKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD LIELIISLAVS+GKYV+SCLDMLVNNF+PP S+ DFLKKPHGLT+KDEVLS
Sbjct: 121 DYGPNVMDSLIELIISLAVSNGKYVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLS 180

Query: 181 RVHAALKDISDLVPLAPLRLQQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVH ALKDISDLVPLAPLRL+QIVVHKMQRVFFKESLTTIYVENMLRLEKGA+SEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKS 300
           ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSR+S
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRS 300

Query: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
           LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACALDPEVCGTRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           AC+LDPEVCG RFAV LADMFVSCNDPPL RMSAVSYLAS+LSRGKFL+TSLVTTILKRL
Sbjct: 361 ACSLDPEVCGARFAVSLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRL 420

Query: 421 VDWCLEYGRTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYG TLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+L
Sbjct: 421 VDWCLEYGETLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFSPSETFIFSGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFL+QAKVANLF+PSETFIF+GLLESEYS++FGG+ERLDMFFPF
Sbjct: 481 THRLSPLKVCLPSIVEEFLQQAKVANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPF 540

Query: 541 DPCLLKTCDRYLRPHFVYWSMVRPTY----DEEEGGGSSDEDIAEVFRDRIENNLMDDEA 600
           DPCLLK CDRYLRPHFVYWSMVRPTY    ++EE GGSSDED AEVF D IE NLMDD A
Sbjct: 541 DPCLLKKCDRYLRPHFVYWSMVRPTYAEEEEQEEDGGSSDED-AEVFPDIIEENLMDDVA 600

Query: 601 MARSYDDGEFDLDEFDSALNKMSITPRNSLQYRRDFVQMPSRIQPSMSPESL 649
           MARSYDD +FDL   DS LN MSITPRNSLQYR DFV+MPSRI+PSMSPESL
Sbjct: 601 MARSYDDQDFDL---DSGLNNMSITPRNSLQYRHDFVKMPSRIRPSMSPESL 625

[Close]

BLAST of CcUC02G017390 vs. ExPASy Swiss-Prot
Match: B2RS91 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus OX=10090 GN=Rrn3 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.8e-34
Identity = 141/535 (26.36%), Postives = 239/535 (44.67%), Query Frame = 0


Query: 109 EVLSQIFKMSLWDYGPNVMDVLIELIISLAVSSGKYVDSCLDMLVNNFIPPYSFKDFLKK 168
           ++++ I ++   +    V++  +  + +L  +   ++  CL M+ ++F+PP      + K
Sbjct: 106 QLINIILRLPWLNRSQRVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPP----RVIVK 165

Query: 169 PHGLTRKDE---------VLSRVHAALKDISDLVPLAPLRLQQIVVHKMQRVFFKESLTT 228
             G+   D          +    H AL+ I+  VP  P  L  I+V K   V   E    
Sbjct: 166 EGGIDVSDSDDEDDNLPAIFDTCHRALQIITRYVPSTPWFLMPILVEKFPFVRKSERTLE 225

Query: 229 IYVENMLRLEKGAMSEFVGRKILTALVDKLLDLDVEIGWDDILQ-----------DDFSK 288
            YV N+LR+        + R+IL  +++KLL LDV +   DI              D ++
Sbjct: 226 CYVHNLLRI--SLYFPTLRREILELVIEKLLKLDVSVSRQDIEDAEEKAAQTCGGTDTTE 285

Query: 289 GIFEMELEDDDETTDDINEDSSELPRELSRKSLGGNVIAETLDSLIVLTFEHLES-CERD 348
           G+F M   D+DE TD   +   E P +++  +      AE LD L+ L   ++E  C   
Sbjct: 286 GLFNM---DEDEDTDPEKKADQEQPNQMAHPT------AERLDVLLCLLLSYIEDVCRVH 345

Query: 349 GRLN-----EVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPEVCGTRFAVWLADMFV 408
           G+++     +++  L+  F + +L  + S   QF +F+ C+         F   L     
Sbjct: 346 GKIDNNKTKDLYRDLISIFDKLLLPTHASCHVQFFMFFLCSFKLGF-AEAFLEHLWKKLQ 405

Query: 409 SCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGRTLNVDPNPKA--- 468
             N+P + R +A +Y+ S+L+R KF+    V T L  LV+W   Y    N D   KA   
Sbjct: 406 DPNNPAIIRQAAANYIGSFLARAKFIPLITVKTCLDLLVNWLHMY--LTNQDSGTKAFCD 465

Query: 469 ---HKVFYSGCQAIMYVLCFRMRSIL--EIPRLKSQLLLMPIGPVLTHRLSPLKVCLPSI 528
              H  FYS CQA+ Y + FR + +L   + +    L  +    ++  +L+PLK+CLP +
Sbjct: 466 VALHGPFYSACQAVFYTVVFRHKQLLSGNLKQGLQYLQSLNFERIVLSQLNPLKICLPQV 525

Query: 529 VEEFLRQAKVANLFSPSETFIFSGLLESEYSK--------TFGG------IERLDMFFPF 588
           V  F   A + N +      +F   +    S+        T GG         LD FFPF
Sbjct: 526 VNFF---AAITNKYQ----LVFCYTIMERNSRQMLPVIRSTAGGDSVQTCTNPLDTFFPF 585

Query: 589 DPCLLKTCDRYLRPHFVYWSMVRPTYDEEEGGGSSDEDIAEVFRDRIENNLMDDE 596
           DPC+LK   +++ P +  W         E+G   S E++ E F+   +  +++DE
Sbjct: 586 DPCVLKRSKKFIDPIYQIW---------EDG---SAEELQE-FKKSTKKEVVEDE 602

[Close]

BLAST of CcUC02G017390 vs. ExPASy Swiss-Prot
Match: Q5R4N9 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii OX=9601 GN=RRN3 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 5.9e-30
Identity = 135/494 (27.33%), Postives = 219/494 (44.33%), Query Frame = 0


Query: 109 EVLSQIFKMSLWDYGPNVMDVLIELIISLAVSSGKYVDSCLDMLVNNFIPP-YSFKDFLK 168
           E L  I     W     V++  +  + +L  +   ++  CL M+ ++F+PP    K+   
Sbjct: 107 EQLISIILRLPWLKSQTVVEEYLAFLANLVSAQTVFLRPCLGMIASHFVPPRVIIKEGDV 166

Query: 169 KPHGLTRKDEVL----SRVHAALKDISDLVPLAPLRLQQIVVHKMQRVFFKESLTTIYVE 228
                  +D+ L       H AL+ I+  VP  P  L  I+V K   V   E     YV 
Sbjct: 167 DVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVH 226

Query: 229 NMLRLEKGAMSEFVGRKILTALVDKLLDLDVEIGWDDILQ-----------DDFSKGIFE 288
           N+LR+        +  +IL  +++KLL LDV     DI              D ++G+F 
Sbjct: 227 NLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQDIEDAEETATQTCGGTDSTEGLFN 286

Query: 289 MELEDDDETTDDINEDSSELPRELSRKSLGGNVIAETLDSLIVLTFEHLES-CERDGRLN 348
           M   D+DE T+    ++   P  L +     + +AE LD L+ L   +++  C  DG+++
Sbjct: 287 M---DEDEETE---HETKAGPERLDQMV---HPVAECLDILMSLVLSYMKDVCYVDGQVD 346

Query: 349 -----EVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPEVCGTRFAVWLADMFVSCND 408
                +++  L+  F + +L+ + S   QF +FY C+         F   L       ++
Sbjct: 347 NGKTKDLYRDLINIFDKLLLSTHASCHVQFFMFYLCSFKLGF-AEAFLEHLWKKLQDPSN 406

Query: 409 PPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGRTLNVDPNPKA------H 468
           P + R +A +Y+ S+L+R KF+    V + L  LV+W   Y    N D   KA      H
Sbjct: 407 PAIIRQAAGNYIGSFLARAKFIPLITVRSCLDLLVNWLHIY--LNNQDSGTKAFCDVALH 466

Query: 469 KVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMP---IGPVLTHRLSPLKVCLPSIVEE 528
             FYS CQA+ Y   FR + +L    LK  L  +       ++  +L+PLK+CLPS+V  
Sbjct: 467 GPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFEWIVMSQLNPLKICLPSVVNF 526

Query: 529 FLRQAKVANLFSPSETFIFSGLLESE------YSKTFGG------IERLDMFFPFDPCLL 560
           F   A + N +     F ++ +  +          T GG         LD FFPFDPC+L
Sbjct: 527 F---AAITNKY--QLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVL 580

[Close]

BLAST of CcUC02G017390 vs. ExPASy Swiss-Prot
Match: Q9NYV6 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens OX=9606 GN=RRN3 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 6.5e-29
Identity = 137/529 (25.90%), Postives = 238/529 (44.99%), Query Frame = 0


Query: 109 EVLSQIFKMSLWDYGPNVMDVLIELIISLAVSSGKYVDSCLDMLVNNFIPP-YSFKDFLK 168
           +++S I ++   +    V++  +  + +L  +   ++  CL M+ ++F+PP    K+   
Sbjct: 108 QLISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDV 167

Query: 169 KPHGLTRKDEVL----SRVHAALKDISDLVPLAPLRLQQIVVHKMQRVFFKESLTTIYVE 228
                  +D+ L       H AL+ I+  VP  P  L  I+V K   V   E     YV 
Sbjct: 168 DVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYVH 227

Query: 229 NMLRLEKGAMSEFVGRKILTALVDKLLDLDVEI---GWDDILQ--------DDFSKGIFE 288
           N+LR+        +  +IL  +++KLL LDV     G +D  +         D ++G+F 
Sbjct: 228 NLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLFN 287

Query: 289 MELEDDDETTDDINEDSSELPRELSRKSLGGNVIAETLDSLIVLTFEHLES-CERDGRLN 348
           M   D+DE T+    ++   P  L +     + +AE LD L+ L   +++  C  DG+++
Sbjct: 288 M---DEDEETE---HETKAGPERLDQMV---HPVAERLDILMSLVLSYMKDVCYVDGKVD 347

Query: 349 -----EVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPEVCGTRFAVWLADMFVSCND 408
                +++  L+  F + +L  + S   QF +FY C+         F   L       ++
Sbjct: 348 NGKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGF-AEAFLEHLWKKLQDPSN 407

Query: 409 PPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGRTLNVDPNPKA------H 468
           P + R +A +Y+ S+L+R KF+    V + L  LV+W   Y    N D   KA      H
Sbjct: 408 PAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIY--LNNQDSGTKAFCDVALH 467

Query: 469 KVFYSGCQAIMYVLCFRMRSIL--EIPRLKSQLLLMPIGPVLTHRLSPLKVCLPSIVEEF 528
             FYS CQA+ Y   FR + +L   +      L  +    ++  +L+PLK+CLPS+V  F
Sbjct: 468 GPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNFF 527

Query: 529 LRQAKVANLFSPSETFIFSGLLESE------YSKTFGG------IERLDMFFPFDPCLLK 588
              A + N +     F ++ +  +          T GG         LD FFPFDPC+LK
Sbjct: 528 ---AAITNKY--QLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCVLK 587

Query: 589 TCDRYLRPHFVYWSMVRPTYDEEEGGGSSDEDIAEVFRDRIENNLMDDE 596
              +++ P +  W               S E++ E F+  ++ ++++DE
Sbjct: 588 RSKKFIDPIYQVWE------------DMSAEELQE-FKKPMKKDIVEDE 604

[Close]

BLAST of CcUC02G017390 vs. ExPASy Swiss-Prot
Match: Q10110 (RNA polymerase I-specific transcription initiation factor rrn3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrn3 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-26
Identity = 139/532 (26.13%), Postives = 238/532 (44.74%), Query Frame = 0


Query: 85  ESLLAAVSLSLNSESLSCNFIVVMEVLSQIFKMSLW-DYGPNVMDVLIELIISLAVSSGK 144
           ++LL+A++ ++ S   S N  +VM VL      S+W     + +      + +L  +   
Sbjct: 96  QNLLSALTCNV-SRLDSSNSSLVMSVLD-----SVWVSRDESFVRCYTRFLGNLISAQSN 155

Query: 145 YVDSCLDMLVNNFIPPYSFKDFLKKPHGLTRKDEVLSRVHAALKDISDLVPLAPLRLQQI 204
           Y+   + ML+ +          L +P  L    E     H ALK + +LVP A   L   
Sbjct: 156 YLPLVMTMLIQH---------MLYRPDSLAIHYE---HAHMALKYVLELVPRAHSFLYSS 215

Query: 205 VVHKMQRVFFKESLTT--IYVENMLRLEKGAMSEFVGRKILTALVDKLLDLDVEIGWDDI 264
           ++ +    +  ESL     Y+ N+L + +   S  +   +L A++DK++ +DVEI     
Sbjct: 216 ILEEFP--YKDESLLAQMTYISNVLSICEYVPS--IKGPVLHAIIDKIIQIDVEI----- 275

Query: 265 LQDDFSKGIFEMELEDDDETTDDI--------NEDSS--------ELPRELSRKSLGGNV 324
                     ++E++DDDE  D++        N DS         E    +S +     +
Sbjct: 276 ----------QVEVDDDDEEEDEVVTDDDGTSNADSEVITASTLYERHTAISSEMTSSTI 335

Query: 325 IA-----------ETLDSLIVLTFEHLE----SCERDGRLNEVFDILLLSFQRTVLTAYK 384
           +            + LD L+   F +L+    S  RD  L  V++ L+ SF  TVL  ++
Sbjct: 336 LTPPSLTDTRQLMQQLDQLLYTLFSYLDSNLKSTSRDRYL--VYNSLIKSFVNTVLKTFR 395

Query: 385 SKFAQFVIFYACALDPEVCGTRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLST 444
            ++ QF+IF+A  LDPE       V L ++ +  + P   R+S   Y+ SY++R K L  
Sbjct: 396 CRYTQFLIFWASQLDPEFTDIFLGV-LTEVCLDPSQPYTLRLSGAMYIGSYVARAKALEK 455

Query: 445 SLVTTILKRLVDWCLEY----GRTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSIL---E 504
           + +  I+  +  W   Y       L+ D   K H VFY+  Q+I Y+ CFR R +    E
Sbjct: 456 NTIQIIVNMMTRWVEAYLDQCENELSDDLLSK-HSVFYAINQSIFYIFCFRWRELCVSDE 515

Query: 505 IPRLKSQLLLMPIGPVLTH-----RLSPLKVCLPSIVEEFLRQAKVANLFSPSETFIFSG 564
              ++ +      G  + H     RL+PL+ C P+IV +F   AKVAN    +  +++S 
Sbjct: 516 SESMEPRPNEWIPGLEILHRSVLSRLNPLRYCSPNIVLQF---AKVANHL--NFMYVYSI 575

Query: 565 LLESEYSKTFGGIERLDMFFPFDPCLLKTCDRYLRPHFVYWSMVRPTYDEEE 571
           + ++       G + +D +FPFDP  L      ++P +  W  +    D+EE
Sbjct: 576 IEQNRKGIFREGFDTMDAYFPFDPYRLTKSSIIVQPFYNEWQQIPGLDDDEE 581

[Close]

BLAST of CcUC02G017390 vs. ExPASy Swiss-Prot
Match: P36070 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RRN3 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.4e-17
Identity = 106/423 (25.06%), Postives = 174/423 (41.13%), Query Frame = 0


Query: 221 YVENMLRLEKGAMSEFVGRKILTALVDKLLDLDVEIGWD-DILQDDF-SKGIFEMELEDD 280
           Y  N+L+L +G  SE +G +I + L++K++ +DVE+  + D L DD     + E++LEDD
Sbjct: 211 YTSNLLKL-RGYCSE-LGFQIWSLLIEKIISIDVELQNELDELDDDVDDDDLEEVDLEDD 270

Query: 281 DETTDDINEDSSE----LPRELSRKSLGGN----------------------------VI 340
           D+  DD  +D  E       EL   +  G+                             +
Sbjct: 271 DDLDDDSGDDDDENCGNSNEELRSGAADGSQSDSEDMDIIEGMDGTEEYNVELTQGIKEL 330

Query: 341 AETLDSLIVLTFEHLESCERDGRLNE-----VFDILLLSFQRTVLTAYKSKFAQFVIFYA 400
           +  LDS++ L   H+E       L       VF+ L   F+  VL  Y ++  Q+++F+ 
Sbjct: 331 STKLDSILTLVSTHVEEQVTPESLESGEGVGVFNTLTTLFKTHVLPTYYTRSIQYIMFHV 390

Query: 401 CALDPEVCGTRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRLV 460
                E+  + F V L D+  + N+    ++ ++ YL SY++R K LS + +  +   L 
Sbjct: 391 SQQQLELMDS-FLVTLIDISFAVNEAAEKKIKSLQYLGSYIARAKKLSRTQIIFVASYLT 450

Query: 461 DWCLEY--GRTLNVDP--NPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIG 520
            W   Y   R   VD     +  K FY+  QA+ Y+ CFR     +        L     
Sbjct: 451 SWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNIFRDTDGNWECELDKFFQ 510

Query: 521 PVLTHRLSPLKVCLPSIVEEFLR---QAKVANLFS--------------------PSETF 577
            ++  + +PLK C  +++  F R   Q  VA  FS                      E  
Sbjct: 511 RMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIENNNNERLRGIIGKADSDKKENS 570

[Close]

BLAST of CcUC02G017390 vs. ExPASy TrEMBL
Match: A0A5A7U3Y2 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001870 PE=3 SV=1)

HSP 1 Score: 1157.5 bits (2993), Expect = 0.0e+00
Identity = 594/652 (91.10%), Postives = 620/652 (95.09%), Query Frame = 0


Query: 1   MGVELENGQAQLHDMEGVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLVGVIHHRDRLTPD 60
           MG ELEN QAQLHDME VNLTDAQLVDFIRGFLSSVSLGD DGYNQLVGVIHHRDRL+PD
Sbjct: 1   MGAELENNQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIVLHESLLAAVSLSLNSESLSCNFIVVMEVLSQIFKMSLW 120
           EVALLVTCLKALSGAVSCIDI+ HESLLAAVSL LNSESLSCNF+VVMEVLSQIFKMSLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDIIQHESLLAAVSLCLNSESLSCNFVVVMEVLSQIFKMSLW 120

Query: 121 DYGPNVMDVLIELIISLAVSSGKYVDSCLDMLVNNFIPPYSFKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD LIELIISLAVS+GKYV+SCLDMLVNNF+PP S+ DFLKKPHGLT+KDEVLS
Sbjct: 121 DYGPNVMDSLIELIISLAVSNGKYVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLS 180

Query: 181 RVHAALKDISDLVPLAPLRLQQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVH ALKDISDLVPLAPLRL+QIVVHKMQRVFFKESLTTIYVENMLRLEKGA+SEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKS 300
           ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSR+S
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRS 300

Query: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
           LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACALDPEVCGTRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           AC+LDPEVCG RFAV LADMFVSCNDPPL RMSAVSYLAS+LSRGKFL+TSLVTTILKRL
Sbjct: 361 ACSLDPEVCGARFAVSLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRL 420

Query: 421 VDWCLEYGRTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYG TLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+L
Sbjct: 421 VDWCLEYGETLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFSPSETFIFSGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFL+QAKVANLF+PSETFIF+GLLESEYS++FGG+ERLDMFFPF
Sbjct: 481 THRLSPLKVCLPSIVEEFLQQAKVANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPF 540

Query: 541 DPCLLKTCDRYLRPHFVYWSMVRPTY----DEEEGGGSSDEDIAEVFRDRIENNLMDDEA 600
           DPCLLK CDRYLRPHFVYWSMVRPTY    ++EE GGSSDED AEVF D IE NLMDD A
Sbjct: 541 DPCLLKKCDRYLRPHFVYWSMVRPTYAEEEEQEEDGGSSDED-AEVFPDIIEENLMDDVA 600

Query: 601 MARSYDDGEFDLDEFDSALNKMSITPRNSLQYRRDFVQMPSRIQPSMSPESL 649
           MARSYDD +FDL   DS LN MSITPRNSLQYR DFV+MPSRI+PSMSPESL
Sbjct: 601 MARSYDDQDFDL---DSGLNNMSITPRNSLQYRHDFVKMPSRIRPSMSPESL 648

[Close]

BLAST of CcUC02G017390 vs. ExPASy TrEMBL
Match: A0A1S3AV30 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo OX=3656 GN=LOC103483270 PE=3 SV=1)

HSP 1 Score: 1107.4 bits (2863), Expect = 0.0e+00
Identity = 573/652 (87.88%), Postives = 598/652 (91.72%), Query Frame = 0


Query: 1   MGVELENGQAQLHDMEGVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLVGVIHHRDRLTPD 60
           MG ELEN QAQLHDME VNLTDAQLVDFIRGFLSSVSLGD DGYNQLVGVIHHRDRL+PD
Sbjct: 1   MGAELENNQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIVLHESLLAAVSLSLNSESLSCNFIVVMEVLSQIFKMSLW 120
           EVALLVTCLKALSGAVSCIDI+ HESLLAA                       IFKMSLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDIIQHESLLAA-----------------------IFKMSLW 120

Query: 121 DYGPNVMDVLIELIISLAVSSGKYVDSCLDMLVNNFIPPYSFKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD LIELIISLAVS+GKYV+SCLDMLVNNF+PP S+ DFLKKPHGLT+KDEVLS
Sbjct: 121 DYGPNVMDSLIELIISLAVSNGKYVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLS 180

Query: 181 RVHAALKDISDLVPLAPLRLQQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVH ALKDISDLVPLAPLRL+QIVVHKMQRVFFKESLTTIYVENMLRLEKGA+SEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKS 300
           ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSR+S
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRS 300

Query: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
           LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACALDPEVCGTRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           AC+LDPEVCG RFAV LADMFVSCNDPPL RMSAVSYLAS+LSRGKFL+TSLVTTILKRL
Sbjct: 361 ACSLDPEVCGARFAVSLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRL 420

Query: 421 VDWCLEYGRTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYG TLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+L
Sbjct: 421 VDWCLEYGETLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFSPSETFIFSGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFL+QAKVANLF+PSETFIF+GLLESEYS++FGG+ERLDMFFPF
Sbjct: 481 THRLSPLKVCLPSIVEEFLQQAKVANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPF 540

Query: 541 DPCLLKTCDRYLRPHFVYWSMVRPTY----DEEEGGGSSDEDIAEVFRDRIENNLMDDEA 600
           DPCLLK CDRYLRPHFVYWSMVRPTY    ++EE GGSSDED AEVF D IE NLMDD A
Sbjct: 541 DPCLLKKCDRYLRPHFVYWSMVRPTYAEEEEQEEDGGSSDED-AEVFPDIIEENLMDDVA 600

Query: 601 MARSYDDGEFDLDEFDSALNKMSITPRNSLQYRRDFVQMPSRIQPSMSPESL 649
           MARSYDD +FDL   DS LN MSITPRNSLQYR DFV+MPSRI+PSMSPESL
Sbjct: 601 MARSYDDQDFDL---DSGLNNMSITPRNSLQYRHDFVKMPSRIRPSMSPESL 625

[Close]

BLAST of CcUC02G017390 vs. ExPASy TrEMBL
Match: A0A5D3D051 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004710 PE=3 SV=1)

HSP 1 Score: 1107.4 bits (2863), Expect = 0.0e+00
Identity = 573/652 (87.88%), Postives = 598/652 (91.72%), Query Frame = 0


Query: 1   MGVELENGQAQLHDMEGVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLVGVIHHRDRLTPD 60
           MG ELEN QAQLHDME VNLTDAQLVDFIRGFLSSVSLGD DGYNQLVGVIHHRDRL+PD
Sbjct: 1   MGAELENNQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIVLHESLLAAVSLSLNSESLSCNFIVVMEVLSQIFKMSLW 120
           EVALLVTCLKALSGAVSCIDI+ HESLLAA                       IFKMSLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDIIQHESLLAA-----------------------IFKMSLW 120

Query: 121 DYGPNVMDVLIELIISLAVSSGKYVDSCLDMLVNNFIPPYSFKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD LIELIISLAVS+GKYV+SCLDMLVNNF+PP S+ DFLKKPHGLT+KDEVLS
Sbjct: 121 DYGPNVMDSLIELIISLAVSNGKYVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLS 180

Query: 181 RVHAALKDISDLVPLAPLRLQQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVH ALKDISDLVPLAPLRL+QIVVHKMQRVFFKESLTTIYVENMLRLEKGA+SEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKS 300
           ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSR+S
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRS 300

Query: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
           LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACALDPEVCGTRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           AC+LDPEVCG RFAV LADMFVSCNDPPL RMSAVSYLAS+LSRGKFL+TSLVTTILKRL
Sbjct: 361 ACSLDPEVCGARFAVSLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRL 420

Query: 421 VDWCLEYGRTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYG TLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+L
Sbjct: 421 VDWCLEYGETLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFSPSETFIFSGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFL+QAKVANLF+PSETFIF+GLLESEYS++FGG+ERLDMFFPF
Sbjct: 481 THRLSPLKVCLPSIVEEFLQQAKVANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPF 540

Query: 541 DPCLLKTCDRYLRPHFVYWSMVRPTY----DEEEGGGSSDEDIAEVFRDRIENNLMDDEA 600
           DPCLLK CDRYLRPHFVYWSMVRPTY    ++EE GGSSDED AEVF D IE NLMDD A
Sbjct: 541 DPCLLKKCDRYLRPHFVYWSMVRPTYAEEEEQEEDGGSSDED-AEVFPDIIEENLMDDVA 600

Query: 601 MARSYDDGEFDLDEFDSALNKMSITPRNSLQYRRDFVQMPSRIQPSMSPESL 649
           MARSYDD +FDL   DS LN MSITPRNSLQYR DFV+MPSRI+PSMSPESL
Sbjct: 601 MARSYDDQDFDL---DSGLNNMSITPRNSLQYRHDFVKMPSRIRPSMSPESL 625

[Close]

BLAST of CcUC02G017390 vs. ExPASy TrEMBL
Match: A0A0A0L7G6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122360 PE=3 SV=1)

HSP 1 Score: 1097.4 bits (2837), Expect = 0.0e+00
Identity = 566/651 (86.94%), Postives = 594/651 (91.24%), Query Frame = 0


Query: 1   MGVELENGQAQLHDMEGVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLVGVIHHRDRLTPD 60
           MG ELEN QAQLH ME VNLTDAQLVDFIRGFLSSVSLGD DGYNQLVGVIHHRDRL+PD
Sbjct: 1   MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIVLHESLLAAVSLSLNSESLSCNFIVVMEVLSQIFKMSLW 120
           EVALLVTCLKALSGAVSCIDI+LHESLLAA                       IFKMSLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDIILHESLLAA-----------------------IFKMSLW 120

Query: 121 DYGPNVMDVLIELIISLAVSSGKYVDSCLDMLVNNFIPPYSFKDFLKKPHGLTRKDEVLS 180
           DYG NVMD LIELIISLAVS+GKYVDSCLDMLVNNF+PP S+ D LKKPHGLTRK+EVLS
Sbjct: 121 DYGSNVMDALIELIISLAVSNGKYVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLS 180

Query: 181 RVHAALKDISDLVPLAPLRLQQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVH ALKDISDLVPLAPLRL+Q VVHKMQRVFF ESLTTIYVENMLRLEKGA+SEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLEQKVVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKS 300
           ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDD+TTDDINEDSSELPRELSR+S
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRS 300

Query: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
           LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQF++FY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFY 360

Query: 361 ACALDPEVCGTRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           AC+LDPEVCG RFA+ LADMFVSCNDPPL RMSAVSYLAS+LSRGKFL+TSLVTTILKRL
Sbjct: 361 ACSLDPEVCGARFAISLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRL 420

Query: 421 VDWCLEYGRTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYG+TLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+L
Sbjct: 421 VDWCLEYGKTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFSPSETFIFSGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFLRQAKVANLF+PSE FIF+GLLES+YS++FGG+ERLDMFFPF
Sbjct: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPF 540

Query: 541 DPCLLKTCDRYLRPHFVYWSMVRPTYDEEE-----GGGSSDEDIAEVFRDRIENNLMDDE 600
           DPCLLK CDRYLRPHFVYWSMVRPTYDEEE      GGSSDED AE+F DRI+ NLMDDE
Sbjct: 541 DPCLLKKCDRYLRPHFVYWSMVRPTYDEEEEEEEDDGGSSDED-AEIFPDRIDENLMDDE 600

Query: 601 AMARSYDDGEFDLDEFDSALNKMSITPRNSLQYRRDFVQMPSRIQPSMSPE 647
           AMA SYDD +FDL   DS LNKMSITPRNSLQYR DFVQMPSRI+PSMSPE
Sbjct: 601 AMAISYDDQDFDL---DSGLNKMSITPRNSLQYRCDFVQMPSRIRPSMSPE 624

[Close]

BLAST of CcUC02G017390 vs. ExPASy TrEMBL
Match: A0A6J1F0A3 (RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438313 PE=3 SV=1)

HSP 1 Score: 1096.6 bits (2835), Expect = 0.0e+00
Identity = 565/649 (87.06%), Postives = 597/649 (91.99%), Query Frame = 0


Query: 1   MGVELENGQAQLHDMEGVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLVGVIHHRDRLTPD 60
           MGVELENGQAQ  DMEGVN TD QLVDFIRGFL+SVSLG+ DGY+QLVGVIHHR RL+ D
Sbjct: 1   MGVELENGQAQFQDMEGVNFTDDQLVDFIRGFLTSVSLGNTDGYHQLVGVIHHRGRLSAD 60

Query: 61  EVALLVTCLKALSGAVSCIDIVLHESLLAAVSLSLNSESLSCNFIVVMEVLSQIFKMSLW 120
           EVALLVTCLKALSGAVSCID+VLHESLLAA                       IFKMSLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDVVLHESLLAA-----------------------IFKMSLW 120

Query: 121 DYGPNVMDVLIELIISLAVSSGKYVDSCLDMLVNNFIPPYSFKDFLKKPHGLTRKDEVLS 180
           DYGPNVMD LIELI SLAVSSGKYVDSCLDMLV NF+PP+S+KDFLKKPHGLTRKDEVLS
Sbjct: 121 DYGPNVMDALIELITSLAVSSGKYVDSCLDMLVTNFMPPHSYKDFLKKPHGLTRKDEVLS 180

Query: 181 RVHAALKDISDLVPLAPLRLQQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240
           RVH ALKDISDLVPLAPLRL+ IVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLELIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKS 300
           ILTALVDKLLDLDVEIGWDDILQDDFSKGIFE+ELEDD+E+TDDI+EDSSELPRELSRKS
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEIELEDDNESTDDIDEDSSELPRELSRKS 300

Query: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360
           LGGNVIAETLDSLIVLTFEHLESCERDGRL+EVFDILLLSFQRTVLTAYKSKFAQFVIFY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLSEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACALDPEVCGTRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRL 420
           ACALDPEVCG RFAV LADMFVSCN  PLTRMSA+SYLASYLSRGKFLSTSLVTTILKRL
Sbjct: 361 ACALDPEVCGARFAVTLADMFVSCNGLPLTRMSAISYLASYLSRGKFLSTSLVTTILKRL 420

Query: 421 VDWCLEYGRTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVL 480
           VDWCLEYG+T +VD NPKAHK+FYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIG +L
Sbjct: 421 VDWCLEYGKTHDVDLNPKAHKIFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGRIL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFSPSETFIFSGLLESEYSKTFGGIERLDMFFPF 540
           THRLSPLKVCLPSIVEEFLRQAKVANLF+PSETFIF+GLLESEYSKTFGGIERLDMFFP+
Sbjct: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFTPSETFIFNGLLESEYSKTFGGIERLDMFFPY 540

Query: 541 DPCLLKTCDRYLRPHFVYWSMVRPTYD-EEEGGGSSDEDIAEVFRDRIENNLMDDEAMAR 600
           DPCLLK CDRYLRP+FVYWSMVRPTYD EEE  GSSDED+AEVF D+IE NLMDDEAMA 
Sbjct: 541 DPCLLKRCDRYLRPYFVYWSMVRPTYDEEEEDEGSSDEDVAEVFPDKIEENLMDDEAMAT 600

Query: 601 SYDDGEFDLDEFDSALNKMSITPRNSLQYRRDFVQMPSRIQPSMSPESL 649
           SYD+ EFDLDEFD+AL+KMSITPRNSL +R+D V+MPSRI+PSMSPESL
Sbjct: 601 SYDNREFDLDEFDNALDKMSITPRNSLPFRQDCVRMPSRIRPSMSPESL 626

[Close]

BLAST of CcUC02G017390 vs. TAIR 10
Match: AT2G34750.1 (RNA polymerase I specific transcription initiation factor RRN3 protein )

HSP 1 Score: 589.7 bits (1519), Expect = 2.8e-168
Identity = 323/640 (50.47%), Postives = 441/640 (68.91%), Query Frame = 0


Query: 15  MEGVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLVGVIHH--RDRLTPDEVALLVTCLKAL 74
           ++ V+L+D QLV  +R  L+SV  GD+D Y+++VGV+    ++   PD VA L T LKAL
Sbjct: 20  VDNVDLSDTQLVQTVRKALTSVKTGDSDLYSEMVGVMARDIKEFKDPDVVAQLETVLKAL 79

Query: 75  SGAVSCIDIVLHESLLAAVSLSLNSESLSCNFIVVMEVLSQIFKMSLWDYGPNVMDVLIE 134
           SGAV+CID++ H+ LL+A                       +F+M LWD+ P+VMD L+ 
Sbjct: 80  SGAVACIDVLHHQKLLSA-----------------------LFRMKLWDHRPDVMDALVN 139

Query: 135 LIISLAVSSGKYVDSCLDMLVNNFIPPYSFKDFLKKPHGLTRKDEVLSRVHAALKDISDL 194
           L+ISLAV+SGKY+DSCL+MLV+NF+PP    + L     L +K +VLSRVHAAL  IS L
Sbjct: 140 LVISLAVTSGKYLDSCLNMLVSNFVPPPWVVNNLSHSRILNKKIDVLSRVHAALLKISIL 199

Query: 195 VPLAPLRLQQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKLLDL 254
           VPL P RL  ++  +M ++  K+    IYVE++L+LE  ++ +  G  IL  ++++L DL
Sbjct: 200 VPLTPSRLVPMLFQQMPKMHKKDHSIVIYVESLLKLENSSIGQVGGSMILGMVMERLRDL 259

Query: 255 DVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELP-RELSRKSLGGNVIAETLD 314
           D+EI WDDI QDD S+G+F+MELED  E T     D  ELP   L + +  G+++++ LD
Sbjct: 260 DLEIEWDDIPQDDSSRGMFDMELEDAAEGT---MNDGDELPVGPLKQDTSDGSIVSKLLD 319

Query: 315 SLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPEVCGT 374
            L+V+ FEHLESC+ DGRL++VF+ L  SF+  +L  YKSKF QF+IFYAC+LDPE CG 
Sbjct: 320 KLMVVAFEHLESCQNDGRLDQVFESLFKSFENFILNTYKSKFTQFLIFYACSLDPENCGV 379

Query: 375 RFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGRTL 434
           +FA  L ++F+S N    TRMSAV+YLAS+L+RGKFL  S V ++LKRL+D C+ Y RT 
Sbjct: 380 KFASKLVEIFLSSNKHVATRMSAVAYLASFLARGKFLPVSFVASMLKRLIDECVGYCRTC 439

Query: 435 NVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKVCL 494
           N D  P+AH++F+SGCQAIMYVLCFRMRSIL++PR +SQ  L P+  +L H+L+PL VCL
Sbjct: 440 NDDTRPEAHQIFFSGCQAIMYVLCFRMRSILDVPRFRSQ--LTPLESILMHKLNPLMVCL 499

Query: 495 PSIVEEFLRQAKVANLFSPSETFIFSGLLESEYSKTFGGIERLDMFFPFDPCLLKTCDRY 554
           PS+V EFLRQAK   LF  S++FIF  LLESE S+ FGG ERLD FFPFDPCLLK+ + +
Sbjct: 500 PSVVAEFLRQAKEGGLFIVSDSFIFDDLLESELSRAFGGFERLDTFFPFDPCLLKSSNSF 559

Query: 555 LRPHFVYWSMVRPTYDEEEGGGSSDEDIAEVFRDRIENNLMDDEAMARSYDDGEFDLDEF 614
           + P+F+YWSMV+ TYDE++     D++ AEV  +  E++  DDEA             + 
Sbjct: 560 ISPNFIYWSMVKATYDEDD-----DDNDAEVIVNGDEDSDEDDEA-------------DL 613

Query: 615 DSALNKMSITPRNSLQYRRD---FVQMPSRIQPSMSPESL 649
           D ALNKMSITP++S + + +    ++MPSRI+PS SPESL
Sbjct: 620 DYALNKMSITPKHSFKNKMERDRLLRMPSRIRPSTSPESL 613

[Close]

BLAST of CcUC02G017390 vs. TAIR 10
Match: AT1G30590.1 (RNA polymerase I specific transcription initiation factor RRN3 protein )

HSP 1 Score: 513.8 bits (1322), Expect = 2.0e-145
Identity = 303/632 (47.94%), Postives = 397/632 (62.82%), Query Frame = 0


Query: 15  MEGVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLVGVIHHRDRLTPDEVALLVTCLKALSG 74
           M+    TD  LV  +R  L+SV  GD D Y+QL  V+   +    D VA L T LK+LS 
Sbjct: 16  MDNAEYTDTDLVFAVRKALASVQNGDTDDYSQLKTVMCLTEDADFDAVAQLETVLKSLSV 75

Query: 75  AVSCIDIVLHESLLAAVSLSLNSESLSCNFIVVMEVLSQIFKMSLWDYGPNVMDVLIELI 134
           +V+ ID+V H+ LL A+SL  +S                        + P+VMD L++LI
Sbjct: 76  SVAWIDLVHHKDLLEAMSLWYHS------------------------HRPSVMDALVDLI 135

Query: 135 ISLAVSSGKYVDSCLDMLVNNFIPPYSFKDFLKKPHGLTRKDEVLSRVHAALKDISDLVP 194
           ISLA +SGKY+D CL+MLV NF  P +FK  + +   + +  EV  RVHAAL  IS L+P
Sbjct: 136 ISLAATSGKYLDPCLNMLVRNFSQP-TFKHKVSQTQLVKKMQEVHPRVHAALHKISYLIP 195

Query: 195 LAPLRLQQIVVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKLLDLDV 254
           LAP  L  I+   M+++  K+     YV+N+LRLE  ++ E VG  IL  +++++LDLD+
Sbjct: 196 LAPWNLVSILAQNMRKIDKKDPSIVTYVDNLLRLENSSIGEVVGSVILMMVMERMLDLDL 255

Query: 255 EIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRKSLGGNVIAETLDSLI 314
             G      DD + G+F+MELED  E+T  +NE        L + + GGNV++E LD L+
Sbjct: 256 VSGC-----DDSNGGMFDMELEDAVEST--MNEGDEFPVGALKQNTSGGNVVSELLDKLM 315

Query: 315 VLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPEVCGTRFA 374
           VL F HLESC+   RL+EVF+IL  SF+  +L  YK+KF+QF++FYAC+LDPE CG RFA
Sbjct: 316 VLFFHHLESCQNSDRLDEVFEILFKSFENYILNTYKTKFSQFLMFYACSLDPENCGVRFA 375

Query: 375 VWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGRTLNVD 434
             L D+++S N   LTRMSAV+YLASYLSRGKFL  S V ++LKRLVD C EY  T N D
Sbjct: 376 SKLLDIYLSSNTCRLTRMSAVAYLASYLSRGKFLPASFVASMLKRLVDECAEYCGTCNDD 435

Query: 435 PNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKVCLPSI 494
             P+AH+VFYSGCQAI+YVLCFRMRSI+EIPR +SQ     +  +L+H+L+PL VCLPS+
Sbjct: 436 VKPEAHQVFYSGCQAILYVLCFRMRSIVEIPRFQSQ--FRSLESILSHKLNPLLVCLPSV 495

Query: 495 VEEFLRQAKVANLFSPSETFIFSGLLESEYSKTFGGIERLDMFFPFDPCLLKTCDRYLRP 554
           V EFL+QAK   LF  SE+FIF  L ESE S+ FGG ERLD FFPFDPCLLK    Y+ P
Sbjct: 496 VSEFLKQAKAGGLFIVSESFIFDDLHESELSRAFGGFERLDTFFPFDPCLLKMSSSYISP 555

Query: 555 HFVYWSMVRPTYDEEEGGGSSDEDIAEVFRDRIENNLMDDEAMARSYDDGEFDLDEFDSA 614
           +F +WSMV+ TY E+      DE I     D  E    DD+              E DS 
Sbjct: 556 NFNFWSMVKTTYGEDGDEELCDEVIVNGDADSAEE--PDDDV-------------ELDSE 598

Query: 615 LNKMSITPRNSLQYRRD-FVQMPSRIQPSMSP 646
           +N MS TP++S     +  ++MPSRI+PS SP
Sbjct: 616 MNTMSTTPKHSFMRETERLLKMPSRIRPSTSP 598

[Close]

BLAST of CcUC02G017390 vs. TAIR 10
Match: AT2G39240.1 (RNA polymerase I specific transcription initiation factor RRN3 protein )

HSP 1 Score: 423.7 bits (1088), Expect = 2.7e-118
Identity = 274/654 (41.90%), Postives = 377/654 (57.65%), Query Frame = 0


Query: 14  DMEGVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLVGVIHHRDRLTPDE------------ 73
           ++E  +L+D  LV  IR  L+S   GD D YN+LV +++ + + + D+            
Sbjct: 5   EVETADLSDKALVSAIREVLASAQSGDTDQYNELVQLMYIKKKKSGDDAMAQPEVPDDVD 64

Query: 74  -VALLVTCLKALSGAVSCIDIVLHESLLAAVSLSLNSESLSCNFIVVMEVLSQIFKMSLW 133
            VA   T LK LS +V+C+D V H  L                       L  I    +W
Sbjct: 65  VVAQRETLLKILSHSVACLDDVHHNHL-----------------------LQLILGTRIW 124

Query: 134 DYGPNVMDVLIELIISLAVSSGKYVDSCLDMLVNNFIPPYSFKDFLKKPHGLTRKD-EVL 193
           D+ PNV+  L++LIISLA +SGK++ SCLD LV+N            +P  L  K  EVL
Sbjct: 125 DHKPNVIYALLDLIISLATTSGKHLSSCLDTLVSN---------LRSQPRKLDNKMLEVL 184

Query: 194 SRVHAALKDISDLVPLAPLRLQQIVVHKMQRVFFKESLTTI--YVENMLRLEKGA-MSEF 253
           SRVHAAL  IS LVPLAP  L  I+   M  V  K  L  +  YV+N+L+LE  + + + 
Sbjct: 185 SRVHAALHKISYLVPLAPSILLPILAQSMPSVHDKARLQVVVPYVKNLLKLENSSIIGKV 244

Query: 254 VGRKILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPREL 313
           VG+ IL  ++ +  DLD EI  DD LQ+D S  +F+MEL+                    
Sbjct: 245 VGKDILMMVMGRFRDLDSEIECDDNLQNDSSLAMFDMELD-------------------- 304

Query: 314 SRKSLGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQF 373
              ++ G ++++ LD L+V +F HL+SC+  GRL+EVF+ L  SF+  +L   K KF+QF
Sbjct: 305 --VAVEGTLVSKLLDDLMVESFNHLKSCQDAGRLDEVFENLFESFENLILNTQKLKFSQF 364

Query: 374 VIFYACALDPEVCGTRFAVWLADMFVSCNDPPLTRMSAVSYLASYLSRGKFLSTSLVTTI 433
           ++FYAC+LDPE CG +FA  L + F+S N+  +TR +AV+YLASYL+R  FLS S V ++
Sbjct: 365 LMFYACSLDPENCGVKFASKLLEKFLSSNNNQVTRTNAVTYLASYLARANFLSASFVASM 424

Query: 434 LKRLVDWCLEYGRTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPI 493
           LKRLVD C +Y RT N D  P+ H+VFYSGCQAI+YVLCFRMRSILE+P  +SQ  L P+
Sbjct: 425 LKRLVDECADYCRTCNDDARPEVHQVFYSGCQAILYVLCFRMRSILEVPHFQSQ--LTPL 484

Query: 494 GPVLTHRLSPLKVCLPSIVEEFLRQAKVANLFSPSETFIFSGLLESEYSKTFGGIERLDM 553
             VL+H+L PL+VCL S+V EFL QAK   LF  S+ FIF  L ESE S+  GG      
Sbjct: 485 ESVLSHKLDPLRVCLSSVVSEFLIQAKACGLFIVSDAFIFDDLSESELSRALGG------ 544

Query: 554 FFPFDPCLLKTCDRYLRPHFVYWSMVRPTYDEEEGGGSSDEDIAEVFRDRIENNLMDDEA 613
           FFPF P LL+  +  + PHF+  S V+ TY++ E     D D                  
Sbjct: 545 FFPF-PWLLEKSNSLISPHFIKRSEVKKTYEQAEVTVYGDTD------------------ 573

Query: 614 MARSYDDGEFDLDEFDSALNKMSITPRNSLQYRRD-FVQMPSRIQPSMSP-ESL 649
              + +D + D+D  D+ +NKMSITP++S+ +  +  ++MPSRI PS SP ESL
Sbjct: 605 ---NEEDSDDDVDP-DNEMNKMSITPKHSVMHETERLLKMPSRISPSTSPRESL 573

The following BLAST results are available for this feature:

BLAST of CcUC02G017390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048966.1	0.0e+00	91.10	RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo var...	[more]
XP_038901148.1	0.0e+00	90.28	RNA polymerase I-specific transcription initiation factor RRN3-like [Benincasa h...	[more]
XP_038896673.1	0.0e+00	90.43	RNA polymerase I-specific transcription initiation factor RRN3-like [Benincasa h...	[more]
KAG7035298.1	0.0e+00	87.44	RNA polymerase I-specific transcription initiation factor RRN3, partial [Cucurbi...	[more]
XP_008438040.1	0.0e+00	87.88	PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Cucum...	[more]

BLAST of CcUC02G017390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B2RS91	1.8e-34	26.36	RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus O...	[more]
Q5R4N9	5.9e-30	27.33	RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii O...	[more]
Q9NYV6	6.5e-29	25.90	RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens O...	[more]
Q10110	2.3e-26	26.13	RNA polymerase I-specific transcription initiation factor rrn3 OS=Schizosaccharo...	[more]
P36070	3.4e-17	25.06	RNA polymerase I-specific transcription initiation factor RRN3 OS=Saccharomyces ...	[more]

BLAST of CcUC02G017390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3Y2	0.0e+00	91.10	RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo v...	[more]
A0A1S3AV30	0.0e+00	87.88	RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo O...	[more]
A0A5D3D051	0.0e+00	87.88	RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo v...	[more]
A0A0A0L7G6	0.0e+00	86.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122360 PE=3 SV=1	[more]
A0A6J1F0A3	0.0e+00	87.06	RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 O...	[more]

BLAST of CcUC02G017390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34750.1	2.8e-168	50.47	RNA polymerase I specific transcription initiation factor RRN3 protein	[more]
AT1G30590.1	2.0e-145	47.94	RNA polymerase I specific transcription initiation factor RRN3 protein	[more]
AT2G39240.1	2.7e-118	41.90	RNA polymerase I specific transcription initiation factor RRN3 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007991	RNA polymerase I specific transcription initiation factor RRN3	PFAM	PF05327	RRN3	coord: 20..563 e-value: 1.8E-114 score: 383.3
IPR007991	RNA polymerase I specific transcription initiation factor RRN3	PANTHER	PTHR12790	TRANSCRIPTION INITIATION FACTOR IA RRN3	coord: 17..639

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC02G017390.1	CcUC02G017390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006361	transcription initiation from RNA polymerase I promoter
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001042	RNA polymerase I core binding
molecular_function	GO:0001181	RNA polymerase I general transcription initiation factor activity
molecular_function	GO:0003743	translation initiation factor activity