CcUC01G013560 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC01G013560
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	50S ribosomal protein L19, chloroplastic-like
Location	CicolChr01: 25738609 .. 25741807 (+)
RNA-Seq Expression	CcUC01G013560
Synteny	CcUC01G013560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGTTTACTAGTTTGATTTGTTCTTGTGTTGTTTTCAGAGGTTCTATAACTATTCACTAAATCTACTTTGGTTTTAAGCAATTGTTTTCGGAGATTCTATAACTATTCACTAAATCTACTTTGGTTTTATATATAATTGCGACATTTATTCTAGTTCGAATTGGAGGCTTTATGACTTCATTTATGCTTAATGTTTTAGTTCATAAGCAGTGAAACAAGTAAATATCATAATATCGGTCTTGGCCAGCACTCTTGATTGATGGTAGGGAAATATGTATAGTTTCTTATGAACTGTGTACGTTATGCATGTGTCCCTAATACTTACCAGACATGATTTGTGTTAAATGTCTTATTACTATAAGGTAACGTAGAGTATGAGTATATCAGCTAGAACTGACTCCTTGTTTAATTATGGATTTGAGCCATTTGCTGTGGGTGTGCCGGTTTGCAAAATACCCTTGGTATCGGTGGCAAATTTTTCATTTGGAGTTAATGGGGGATGGGCGTTCTTTGTTGGTGGAAAAGTGGTTTTGCACTCCCCTTCCTTCTAAGGAAAAGAGTGTTGTGGCAAGCAAGCTTCTTTGCTATTTTGTGGAGTATTTTGGTTGGAGTGTAATCGTATTTGAGGTGGAGAGAAATCTAGAGAGGAGGTTTGGGATTTGGTGAGGTTTAATCCTTCCATTTGGGTGTCGGTCACTCGATTGTTCTATACTTTTGACATTGGTTTTGTTCTTTTAGATTGAAGTCTTTTTTGTAGTTAGTGTTAGACTCTTGTTGTCACACCCCCTCCCAGATTACCCTCTATGACTTGAGAAGAGATGTGAAGACAACAAACATCACCCCTTTTGTGACTGTCCAACCCCTTTTGTGAGGTTTACTGTCCAACTGTACCTAAATAACTTATTGAAACATGATTTACATAACTGTACCTGAATAACTTATTGAAACATGATTTACATAACTGTCTAATATGACTTACGTAACTGCCCATATCACTATTTCTAATAACATAGACATTCAAATCAGCTACGCCCATAAATTCAATAACATGAGAATTTTATATTTACATAACTAGATATTCCAAACTCTTTCACAAATAAACTGAGATGACATATACAATAACGAGTTGTCACATCTGAACTACTAGATGGCTATGTTTACATGTCACATATACAAAGTTATTTACACATACAACAACTGAAATGCAAAGTATCTTCTAATAACTCGAAGCTTAAGCAGGGCGAACTTCTTCGCTACCTAGGTGGGAAAGAAAACATGGAAAACATGAGCTGAATGCCCAACTTAGTGAGTGACATAGTATTTTAAACCAAATCATGCTCAATGATAGAGAAAACAAAACTTTAGCATAAAACTCATGTTAAGCCTTCAAATAAAACATAATCCGGGTCTTTTACATAAATATAGTTTACAAACTCATCAAACCTTCTTTTGCTTTAAAATTCCCTTAGTTGAGGCGGAGCAAAGGAGCAAAGCTTAACACACTCAACGTCGAAAACAAACCTTAGTTAGGGGCAGAGTAATCTCGACACACCCAGCGTCGAAAACCTTAGCTGATGCAGAGTAACCTCAACACATCACGTTATTAATCACTATGTGCACATAGGACTATCTCAGGATGCCCAAGTACCTTCTTCGAGTCCTTCAATACTGGGTCCCTAGGCTCAAATGCCTTCTCAACATCTTCAATATTGAGCTCCTTTAAGTCACAAGTTGTCTACATGCCTTCTCAACGTCCCTCAGCAGTGGGTCCCTTAGAAAACATTTTAGAAACAGGAATGCTTTGCATAAACATTTTCATTATAAAACATTTCAAGCATTTCTCAATAAATAGCATCTTATAAACATGTTTTTCAAAAACTTGTAGAAAGCAGATAAAACATGCCTTTCATGCCATTAAAATCAAATATAACCAGTCATCATGCTTATCATATCATAAATCATCATAAAATCATATTTTATAAGAAAGGCTTGTTTTTTTTTTTTTTTTTTTTTTTATCGTCCTTGTATTCTTTCATTTTTCCGATGTAAGTTCGGTTTTCTTGTCAATTTTTGTTTTCTTTTTCAAAGAGCACTTTGCTATTTTCTGACTTGTAGTTATTATGTATTCTATTTCCCCTTTCAACAAATCAAGTATAGAGAACCACATATTTATTTTGTAATTAGTCTGTCTGAAATGTAATTAGCTTGCGTCAAGCTGATATAACTTTTTAAGGGGAAAAAATGTGGTTATAGTTCTTTTCTTCTATGATCCTTGTTAATTGGAGGGCCGTTCCGTAATTTCCTTGGCATCTATGGAGATTGGTTATCTTCCTCTTATTACCTCTTTTCTTTCAATATTGCTGAAAAACAGAAAAGCCGTCAACTATCCTCGTGAGAAATGTTTTAAGAAATTGTGTATACGAACTTTCTGTTGGTTTATGGGTACCGTTTATTTAAGAGTCTATTTTGTAATTTATCATTTTGTAACAATTTATACAACTATTTAGCAGAAAAATACGAGCTCCCAAATGGAATTTGTGCCTTTGAGAAAGCATGTATCTTCAACTTGTTCAGCATTCCAAAGTTCTTGGCCACATATATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCTACGACAAGCTCGATGGAATCAGCTCTACAAGGATCCCCTGCAGTTGATTCTGATATAACTCCTCGTATCAAATTTAAGAGGCTTGATAAAACCTCAAGACACATAATGCAGGTATTCACATTTCTGAGTATTGTTGGAAAAGTAGTTTCATTTCATCTTCCATTTGTTTGCTTTCAATATATTGCTTTCTTTTCCCTACAGATTTTAGATAAGGAAGCTGTTGAGGAGGTAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGTAAAGTTCAGTCAAATTATTATCATATTGCATTACTTTCAGATAATGTTCTTATTCTAAAAAGCAGTTGTAGATGAGGTTATGGAACAGTTTTTTGGCTTTTCTTGTTATGTGTGAACAGGAAGTACCTGAGAACAAGCGGCGTGTCTCAACATTAAAAGGTATTGTAATAGCCAGAAGAAATGCTGGTCTCAACACAACTTTTAGATTAAGGAGGCTAGTTGCTGGTGTTGGGATTGAGTCCCTCTTCCCTCTGTAA

mRNA sequence

ATGGTCAAAAATACGAGCTCCCAAATGGAATTTGTGCCTTTGAGAAAGCATGTATCTTCAACTTGTTCAGCATTCCAAAGTTCTTGGCCACATATATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCTACGACAAGCTCGATGGAATCAGCTCTACAAGGATCCCCTGCAGTTGATTCTGATATAACTCCTCGTATCAAATTTAAGAGGCTTGATAAAACCTCAAGACACATAATGCAGGTATTCACATTTCTGAGTATTGTTGGAAAAGTAGTTTCATTTCATCTTCCATTTGTTTGCTTTCAATATATTGCTTTCTTTTCCCTACAGATTTTAGATAAGGAAGCTGTTGAGGAGGTAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGGCGTGTCTCAACATTAAAAGGTATTGTAATAGCCAGAAGAAATGCTGGTCTCAACACAACTTTTAGATTAAGGAGGCTAGTTGCTGGTGTTGGGATTGAGTCCCTCTTCCCTCTGTAA

Coding sequence (CDS)

ATGGTCAAAAATACGAGCTCCCAAATGGAATTTGTGCCTTTGAGAAAGCATGTATCTTCAACTTGTTCAGCATTCCAAAGTTCTTGGCCACATATATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCTACGACAAGCTCGATGGAATCAGCTCTACAAGGATCCCCTGCAGTTGATTCTGATATAACTCCTCGTATCAAATTTAAGAGGCTTGATAAAACCTCAAGACACATAATGCAGGTATTCACATTTCTGAGTATTGTTGGAAAAGTAGTTTCATTTCATCTTCCATTTGTTTGCTTTCAATATATTGCTTTCTTTTCCCTACAGATTTTAGATAAGGAAGCTGTTGAGGAGGTAAAAGCACAGAGAGAAATTCCAGATATAAAGCCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGGCGTGTCTCAACATTAAAAGGTATTGTAATAGCCAGAAGAAATGCTGGTCTCAACACAACTTTTAGATTAAGGAGGCTAGTTGCTGGTGTTGGGATTGAGTCCCTCTTCCCTCTGTAA

Protein sequence

MVKNTSSQMEFVPLRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESALQGSPAVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAVEEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVGIESLFPL

Homology

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BLAST of CcUC01G013560 vs. NCBI nr
Match: XP_038896029.1 (uncharacterized protein LOC120084206 [Benincasa hispida])

HSP 1 Score: 267.3 bits (682), Expect = 1.0e-67
Identity = 148/187 (79.14%), Postives = 151/187 (80.75%), Query Frame = 0


Query: 3   KNTSSQMEFVPLRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESALQGSPA 62
           KN SSQMEFVP RKHVSS CSAF SS PH+FQLAEI APFSSRGIATTSSMESALQGSPA
Sbjct: 79  KNMSSQMEFVPSRKHVSSVCSAFPSSRPHLFQLAEIVAPFSSRGIATTSSMESALQGSPA 138

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           VDSDITPRIKFKRLDKTS+HIM                              QILDKEAV
Sbjct: 139 VDSDITPRIKFKRLDKTSKHIM------------------------------QILDKEAV 198

Query: 123 EEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVG 182
           EEVKAQREIPDI+PGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVG
Sbjct: 199 EEVKAQREIPDIRPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVG 235

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 259 IESLFPL 235

[Close]

BLAST of CcUC01G013560 vs. NCBI nr
Match: KAE8652777.1 (hypothetical protein Csa_022701 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 6.0e-65
Identity = 144/187 (77.01%), Postives = 149/187 (79.68%), Query Frame = 0


Query: 3   KNTSSQMEFVPLRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESALQGSPA 62
           KN SSQMEFVPLRKH SST SAFQSS PH FQLAE AAPFSSRGIATTSSMESALQGSPA
Sbjct: 310 KNMSSQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSSRGIATTSSMESALQGSPA 369

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           VDS I PRIKFKRLDKTSRHIM                              QILDKEAV
Sbjct: 370 VDSVIPPRIKFKRLDKTSRHIM------------------------------QILDKEAV 429

Query: 123 EEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVG 182
           EEVKA+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAGVG
Sbjct: 430 EEVKARREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVG 466

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 490 IESLFPL 466

[Close]

BLAST of CcUC01G013560 vs. NCBI nr
Match: XP_031743848.1 (50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativus] >XP_031743849.1 50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativus] >XP_031743851.1 50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 6.0e-65
Identity = 144/187 (77.01%), Postives = 149/187 (79.68%), Query Frame = 0


Query: 3   KNTSSQMEFVPLRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESALQGSPA 62
           KN SSQMEFVPLRKH SST SAFQSS PH FQLAE AAPFSSRGIATTSSMESALQGSPA
Sbjct: 83  KNMSSQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSSRGIATTSSMESALQGSPA 142

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           VDS I PRIKFKRLDKTSRHIM                              QILDKEAV
Sbjct: 143 VDSVIPPRIKFKRLDKTSRHIM------------------------------QILDKEAV 202

Query: 123 EEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVG 182
           EEVKA+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAGVG
Sbjct: 203 EEVKARREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVG 239

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 263 IESLFPL 239

[Close]

BLAST of CcUC01G013560 vs. NCBI nr
Match: XP_031743853.1 (50S ribosomal protein L19-2, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 6.0e-65
Identity = 144/187 (77.01%), Postives = 149/187 (79.68%), Query Frame = 0


Query: 3   KNTSSQMEFVPLRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESALQGSPA 62
           KN SSQMEFVPLRKH SST SAFQSS PH FQLAE AAPFSSRGIATTSSMESALQGSPA
Sbjct: 79  KNMSSQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSSRGIATTSSMESALQGSPA 138

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           VDS I PRIKFKRLDKTSRHIM                              QILDKEAV
Sbjct: 139 VDSVIPPRIKFKRLDKTSRHIM------------------------------QILDKEAV 198

Query: 123 EEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVG 182
           EEVKA+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAGVG
Sbjct: 199 EEVKARREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVG 235

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 259 IESLFPL 235

[Close]

BLAST of CcUC01G013560 vs. NCBI nr
Match: XP_023522394.1 (uncharacterized protein LOC111786317 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254.2 bits (648), Expect = 8.7e-64
Identity = 142/188 (75.53%), Postives = 148/188 (78.72%), Query Frame = 0


Query: 3   KNTSSQMEFVPLRKHVSSTCSAFQSSWPHIFQLAEIAAPF-SSRGIATTSSMESALQGSP 62
           ++  SQMEFVP R HV+STCSAFQS W H FQLAEIAAPF SSRGIATTSSMESA QGSP
Sbjct: 44  RSMGSQMEFVPSRNHVASTCSAFQSLWQHSFQLAEIAAPFSSSRGIATTSSMESAPQGSP 103

Query: 63  AVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEA 122
           AVDSDITPRIKFKRLDKTS+HIM                              QILDKEA
Sbjct: 104 AVDSDITPRIKFKRLDKTSKHIM------------------------------QILDKEA 163

Query: 123 VEEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGV 182
           + EVKAQREIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLNTTFRLRRLVAGV
Sbjct: 164 IGEVKAQREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNTTFRLRRLVAGV 201

Query: 183 GIESLFPL 190
           GIESLFPL
Sbjct: 224 GIESLFPL 201

[Close]

BLAST of CcUC01G013560 vs. ExPASy Swiss-Prot
Match: P82413 (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 PE=1 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 5.8e-18
Identity = 43/74 (58.11%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 116 ILDKEAVEEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLR 175
           IL+K+AV   +  R +P I+ G IVQ+++EVPENKRR+S  KGIVI+R+NAG++TT R+R
Sbjct: 125 ILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIR 184

Query: 176 RLVAGVGIESLFPL 190
           R++AGVG+E +FPL
Sbjct: 185 RIIAGVGVEIVFPL 198

[Close]

BLAST of CcUC01G013560 vs. ExPASy Swiss-Prot
Match: Q8W463 (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-17
Identity = 39/74 (52.70%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 116 ILDKEAVEEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLR 175
           IL+++A+E  +  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT R+R
Sbjct: 117 ILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIR 176

Query: 176 RLVAGVGIESLFPL 190
           R++AG+G+E +FP+
Sbjct: 177 RIIAGIGVEIVFPI 190

[Close]

BLAST of CcUC01G013560 vs. ExPASy Swiss-Prot
Match: Q8RXX5 (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.7e-17
Identity = 38/74 (51.35%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 116 ILDKEAVEEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLR 175
           +L+K+A+E  +  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT R+R
Sbjct: 121 LLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIR 180

Query: 176 RLVAGVGIESLFPL 190
           R++AG+G+E +FP+
Sbjct: 181 RIIAGIGVEIVFPI 194

[Close]

BLAST of CcUC01G013560 vs. ExPASy Swiss-Prot
Match: B6IP95 (50S ribosomal protein L19 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rplS PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-10
Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 114 LQILDKEAVEEVKAQREIPDIKPGYIVQLKVEVPENKR-RVSTLKGIVIARRNAGLNTTF 173
           LQ L++E V ++ A + IP   PG  V++ V+V E  R RV   +G+VIAR+NAGLN++F
Sbjct: 4   LQQLEQEQVAKLTAGKTIPAFSPGDTVRVNVKVVEGTRERVQAYEGVVIARKNAGLNSSF 63

Query: 174 RLRRLVAGVGIESLFPL 190
            +R++  G G+E +FPL
Sbjct: 64  TVRKISYGEGVERVFPL 80

[Close]

BLAST of CcUC01G013560 vs. ExPASy Swiss-Prot
Match: Q2G8H1 (50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=rplS PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.8e-10
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 114 LQILDKEAVEEVKAQREIPDIKPGYIVQLKVEVPENKR-RVSTLKGIVIARRNAGLNTTF 173
           +Q L+ EA+ E KA++EIPD + G  V++ V V E +R RV   +G+ IAR N GL + F
Sbjct: 4   IQQLEAEAIAEFKAKKEIPDFRAGDTVRVGVRVVEGERTRVQAYEGVCIARSNRGLGSNF 63

Query: 174 RLRRLVAGVGIESLFPL 190
            +R++  G G+E +FPL
Sbjct: 64  TVRKISFGEGVERVFPL 80

[Close]

BLAST of CcUC01G013560 vs. ExPASy TrEMBL
Match: A0A0A0LV41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126060 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.9e-65
Identity = 144/187 (77.01%), Postives = 149/187 (79.68%), Query Frame = 0


Query: 3   KNTSSQMEFVPLRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESALQGSPA 62
           KN SSQMEFVPLRKH SST SAFQSS PH FQLAE AAPFSSRGIATTSSMESALQGSPA
Sbjct: 216 KNMSSQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSSRGIATTSSMESALQGSPA 275

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           VDS I PRIKFKRLDKTSRHIM                              QILDKEAV
Sbjct: 276 VDSVIPPRIKFKRLDKTSRHIM------------------------------QILDKEAV 335

Query: 123 EEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVG 182
           EEVKA+REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAGVG
Sbjct: 336 EEVKARREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVG 372

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 396 IESLFPL 372

[Close]

BLAST of CcUC01G013560 vs. ExPASy TrEMBL
Match: A0A6J1K1Y5 (50S ribosomal protein L19, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490302 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.8e-62
Identity = 138/187 (73.80%), Postives = 146/187 (78.07%), Query Frame = 0


Query: 3   KNTSSQMEFVPLRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESALQGSPA 62
           K+  SQMEF+P  K VSS C AFQS   H+FQLAEIAAPFSSRGIATTSSMESA QGSPA
Sbjct: 79  KDMGSQMEFLPSGKRVSSACPAFQSPRKHLFQLAEIAAPFSSRGIATTSSMESAPQGSPA 138

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           +DSDITPRIKFKRLDKTS+HIM                              QILDKEA+
Sbjct: 139 IDSDITPRIKFKRLDKTSKHIM------------------------------QILDKEAI 198

Query: 123 EEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVG 182
           EEVKA+REIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRR+VAGVG
Sbjct: 199 EEVKAKREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVG 235

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 259 IESLFPL 235

[Close]

BLAST of CcUC01G013560 vs. ExPASy TrEMBL
Match: A0A6J1K3G4 (50S ribosomal protein L19, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490302 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.8e-62
Identity = 138/187 (73.80%), Postives = 146/187 (78.07%), Query Frame = 0


Query: 3   KNTSSQMEFVPLRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESALQGSPA 62
           K+  SQMEF+P  K VSS C AFQS   H+FQLAEIAAPFSSRGIATTSSMESA QGSPA
Sbjct: 80  KDMGSQMEFLPSGKRVSSACPAFQSPRKHLFQLAEIAAPFSSRGIATTSSMESAPQGSPA 139

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           +DSDITPRIKFKRLDKTS+HIM                              QILDKEA+
Sbjct: 140 IDSDITPRIKFKRLDKTSKHIM------------------------------QILDKEAI 199

Query: 123 EEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVG 182
           EEVKA+REIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRR+VAGVG
Sbjct: 200 EEVKAKREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVG 236

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 260 IESLFPL 236

[Close]

BLAST of CcUC01G013560 vs. ExPASy TrEMBL
Match: A0A1S3CHC3 (50S ribosomal protein L19-2, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500938 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 5.2e-62
Identity = 140/187 (74.87%), Postives = 144/187 (77.01%), Query Frame = 0


Query: 3   KNTSSQMEFVPLRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESALQGSPA 62
           KN SSQMEFV LRKH SST S  QSS PH FQLAEIAAPFSSRGIATTSSM SAL GSPA
Sbjct: 80  KNMSSQMEFVALRKHASSTFSVIQSSRPHFFQLAEIAAPFSSRGIATTSSMGSALLGSPA 139

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           VDS I PRIKFKRLDKTSRHIM                              QILDKEAV
Sbjct: 140 VDSVIPPRIKFKRLDKTSRHIM------------------------------QILDKEAV 199

Query: 123 EEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVG 182
           EEVKA REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAGVG
Sbjct: 200 EEVKAHREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVG 236

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 260 IESLFPL 236

[Close]

BLAST of CcUC01G013560 vs. ExPASy TrEMBL
Match: A0A1S3CHF9 (50S ribosomal protein L19-2, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500938 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 5.2e-62
Identity = 140/187 (74.87%), Postives = 144/187 (77.01%), Query Frame = 0


Query: 3   KNTSSQMEFVPLRKHVSSTCSAFQSSWPHIFQLAEIAAPFSSRGIATTSSMESALQGSPA 62
           KN SSQMEFV LRKH SST S  QSS PH FQLAEIAAPFSSRGIATTSSM SAL GSPA
Sbjct: 79  KNMSSQMEFVALRKHASSTFSVIQSSRPHFFQLAEIAAPFSSRGIATTSSMGSALLGSPA 138

Query: 63  VDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHLPFVCFQYIAFFSLQILDKEAV 122
           VDS I PRIKFKRLDKTSRHIM                              QILDKEAV
Sbjct: 139 VDSVIPPRIKFKRLDKTSRHIM------------------------------QILDKEAV 198

Query: 123 EEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRLVAGVG 182
           EEVKA REIPDIKPGYIVQLKVEVPENKRR+STLKGIVIARRNAGLN+TFR+RR+VAGVG
Sbjct: 199 EEVKAHREIPDIKPGYIVQLKVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVG 235

Query: 183 IESLFPL 190
           IESLFPL
Sbjct: 259 IESLFPL 235

[Close]

BLAST of CcUC01G013560 vs. TAIR 10
Match: AT4G11630.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-37
Identity = 86/148 (58.11%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 42  FSSRGIATTSSMESALQGSPAVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHL 101
           ++SR  +TT   +S++QGSP  D  +  RIKFKRLDKT++HIM                 
Sbjct: 76  YASRCFSTTG--DSSVQGSPESDCVVPQRIKFKRLDKTAKHIM----------------- 135

Query: 102 PFVCFQYIAFFSLQILDKEAVEEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVI 161
                        QI+DKEAVEEV++ REIP+IKPGYIVQLKVEVPENKRRVS +KG+VI
Sbjct: 136 -------------QIVDKEAVEEVRSLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVI 191

Query: 162 ARRNAGLNTTFRLRRLVAGVGIESLFPL 190
           ARRNAGLN+TFR+RRLVAGVG+ES+FPL
Sbjct: 196 ARRNAGLNSTFRIRRLVAGVGVESMFPL 191

[Close]

BLAST of CcUC01G013560 vs. TAIR 10
Match: AT1G24240.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-37
Identity = 87/148 (58.78%), Postives = 102/148 (68.92%), Query Frame = 0


Query: 42  FSSRGIATTSSMESALQGSPAVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFHL 101
           FSSR  +TT     ++QGSP  D  +  RIKFKRLDKT++HIM                 
Sbjct: 74  FSSRCFSTTG---DSVQGSPESDCVVPQRIKFKRLDKTAKHIM----------------- 133

Query: 102 PFVCFQYIAFFSLQILDKEAVEEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVI 161
                        QI+DKEAVEEV+  REIP+IKPGYIVQLKVEVPENKRRVS +KG+VI
Sbjct: 134 -------------QIVDKEAVEEVRTLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVI 188

Query: 162 ARRNAGLNTTFRLRRLVAGVGIESLFPL 190
           ARRNAGLN+TFR+RRLVAGVG+ES+FPL
Sbjct: 194 ARRNAGLNSTFRIRRLVAGVGVESMFPL 188

[Close]

BLAST of CcUC01G013560 vs. TAIR 10
Match: AT5G11750.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 152.1 bits (383), Expect = 4.4e-37
Identity = 87/149 (58.39%), Postives = 103/149 (69.13%), Query Frame = 0


Query: 42  FSSRGIATT-SSMESALQGSPAVDSDITPRIKFKRLDKTSRHIMQVFTFLSIVGKVVSFH 101
           +S R  +TT  S++S  QGSP  D  +  RIKFKRLDKT++HIM                
Sbjct: 77  YSLRCFSTTGDSVQSTPQGSPESDCVVPQRIKFKRLDKTAKHIM---------------- 136

Query: 102 LPFVCFQYIAFFSLQILDKEAVEEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIV 161
                         QI+DKEAVEEV+  REIP+IKPGYIVQLKVEVPENKRRVS +KG+V
Sbjct: 137 --------------QIVDKEAVEEVRNLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVV 195

Query: 162 IARRNAGLNTTFRLRRLVAGVGIESLFPL 190
           IARRNAGLN+TFR+RRLVAGVG+ES+FPL
Sbjct: 197 IARRNAGLNSTFRIRRLVAGVGVESMFPL 195

[Close]

BLAST of CcUC01G013560 vs. TAIR 10
Match: AT4G17560.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-18
Identity = 39/74 (52.70%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 116 ILDKEAVEEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLR 175
           IL+++A+E  +  R +P+I+ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT R+R
Sbjct: 117 ILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIR 176

Query: 176 RLVAGVGIESLFPL 190
           R++AG+G+E +FP+
Sbjct: 177 RIIAGIGVEIVFPI 190

[Close]

BLAST of CcUC01G013560 vs. TAIR 10
Match: AT5G47190.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-18
Identity = 38/74 (51.35%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 116 ILDKEAVEEVKAQREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLR 175
           +L+K+A+E  +  R +P ++ G IV++K+EVPENKRR+S  KGIV++R+NAG++TT R+R
Sbjct: 121 LLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIR 180

Query: 176 RLVAGVGIESLFPL 190
           R++AG+G+E +FP+
Sbjct: 181 RIIAGIGVEIVFPI 194

The following BLAST results are available for this feature:

BLAST of CcUC01G013560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896029.1	1.0e-67	79.14	uncharacterized protein LOC120084206 [Benincasa hispida]	[more]
KAE8652777.1	6.0e-65	77.01	hypothetical protein Csa_022701 [Cucumis sativus]	[more]
XP_031743848.1	6.0e-65	77.01	50S ribosomal protein L19-2, chloroplastic isoform X1 [Cucumis sativus] >XP_0317...	[more]
XP_031743853.1	6.0e-65	77.01	50S ribosomal protein L19-2, chloroplastic isoform X2 [Cucumis sativus]	[more]
XP_023522394.1	8.7e-64	75.53	uncharacterized protein LOC111786317 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CcUC01G013560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82413	5.8e-18	58.11	50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 P...	[more]
Q8W463	2.2e-17	52.70	50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q8RXX5	3.7e-17	51.35	50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
B6IP95	3.4e-10	45.45	50S ribosomal protein L19 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
Q2G8H1	5.8e-10	44.16	50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain ATCC 700278...	[more]

BLAST of CcUC01G013560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV41	2.9e-65	77.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G126060 PE=3 SV=1	[more]
A0A6J1K1Y5	1.8e-62	73.80	50S ribosomal protein L19, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=...	[more]
A0A6J1K3G4	1.8e-62	73.80	50S ribosomal protein L19, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=...	[more]
A0A1S3CHC3	5.2e-62	74.87	50S ribosomal protein L19-2, chloroplastic-like isoform X1 OS=Cucumis melo OX=36...	[more]
A0A1S3CHF9	5.2e-62	74.87	50S ribosomal protein L19-2, chloroplastic-like isoform X2 OS=Cucumis melo OX=36...	[more]

BLAST of CcUC01G013560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11630.1	1.1e-37	58.11	Ribosomal protein L19 family protein	[more]
AT1G24240.1	2.0e-37	58.78	Ribosomal protein L19 family protein	[more]
AT5G11750.1	4.4e-37	58.39	Ribosomal protein L19 family protein	[more]
AT4G17560.1	1.6e-18	52.70	Ribosomal protein L19 family protein	[more]
AT5G47190.1	2.7e-18	51.35	Ribosomal protein L19 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001857	Ribosomal protein L19	PFAM	PF01245	Ribosomal_L19	coord: 121..189 e-value: 4.6E-15 score: 55.5
IPR001857	Ribosomal protein L19	PANTHER	PTHR15680	RIBOSOMAL PROTEIN L19	coord: 3..189
IPR038657	Ribosomal protein L19 superfamily	GENE3D	2.30.30.790		coord: 107..189 e-value: 8.3E-17 score: 63.1
None	No IPR available	PANTHER	PTHR15680:SF9	39S RIBOSOMAL PROTEIN L19, MITOCHONDRIAL	coord: 3..189
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 117..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC01G013560.1	CcUC01G013560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome