CcUC01G012570 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC01G012570
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRrna intron-encoded homing endonuclease
LocationCicolChr01: 23955040 .. 23957844 (+)
RNA-Seq ExpressionCcUC01G012570
SyntenyCcUC01G012570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGGATCCCGCGAACCACCGAGTCTTTGAACGCAAGTTGCGCCCGGAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCTGCCCCCCCCACACAACACCCCACGCGGGCTCGTTGCGTAGGCAGGGGGCACACACTGGCCTCCCGTGCGCACCGTCGTGCGGATGGCTTAAATTCGAGTCCTCGGCGCACGTCGTCGCGACACTACGGTGGTTGATCCAACCTCGGTACCGCGTCGCGATCTTGACGCCGCCTCCTTGTGGACTCCTACATCGACCCTCCGAACGCCGTCCCCCAAAGGACGACGCTCTCGACGCGACCCCAGGTCAGGCGGGACTACCCGCTGAGTTTAAGCATATCAATAAGCGGAGGAAAAGAAACTTACAAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAAGAGCCCAGCTTGAAAATCGGGCGTCCTCGACGTCCGAATTGTAGTCTGGAGAAGCGTCCTCAGCGGCGGACCGGGCACAAGTCCCCTGGAAGGGGGCGCCGGAGAGGGTGAGAGCCCCGTTGCGCTCGGACCCTGTCGCACCACGAGGCGCTGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATAGGGCGGTAAATTCTGTCCAAGGCTAAATATGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAATAGTGCTTGAAATTGTCGGGAGGGAAGCGGATGGGGGCCGGCGATGTGCCCCAGTCGGATGTGGAACGGTGACGAGCCGGTCCGCCGATCGACTTGGGGCATGGACCGATGCGGATTGAGACGGCGGCCTACGCCCAGGCCTTTGTTACGCCTGTGGAGACGTCGTCGTCCCGATCGTGGCTGGCAGCGCGCGCCTCCGGGCGGGCTTCGGCATCTGCGCGCTCCTGGCATCGGCCTGTGGGCTCCCCATTCGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTTAACGGGCGAGTAAACCCGTAAGGCGCAAGGAAGCTGACTGGTGGGATCCCCTAGTGGGTTGCACCACCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGCGGGCGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTTTGTTGAGCCGCGCCACGGAATCGAGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGGAAGCCGGGTTACGGTGCCTAACTGCGCGCTAACCTAGATCCCACAAAGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAGCCCCGAAAATGGATGGCGCTGAAGCGCGCGACCTATACCCGGCCGTCGGGGCAAGAGCCAAGCCCCGATGAGTAGGAGGGCGCGGCGGTCGCTGCAAAACCTTGGGCGTGAGCCCGGGCGGAGCGGCCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGGGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTTAGTCGATCCTAAGAGACGGGGGAAACCCGTCTGATAGCGCGACAGCGCGAACTTCGAAAGGGAATCGGGTTAAAATTCCTGAACCGGGACGTGGCGGCTGACGGCAACGTTAGGGATTCCGGAGACGTCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGTTTAACAGCCTGCCCACCCTGGAAACGGCTCAGCCGGAGGTAGGGTCCAGTGGCTGGAAGAGCACCGCACGTCGCGTGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTGCCTCCCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTGGTCGATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCTGAACCCGTCGGCTGTCGGTGGACTGCTCAAGCTGCTTCAGCGGCGAGAGCGGGTCGCCGCTTGCCGGCTGGGGGACGGACTGGGAATGGCTCCTTCGGGGGCCTTCCCAGGGCGTCGAACAGTCAACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGCGAATGCTAACGCAATGTGATTTCTGCCCAGTGCTCTAAATGTCAAAGTGAACAAATTCAACCAAGTGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCATCATCTAATTAGTGACGCGCATGACTGGATTAACGAGATTCCCACTGTCCTTGTCTATTATCCAGCGAAACCACAGCCAAGGGAATGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGACTTTGTGA

mRNA sequence

ATGAAGAACGATCCCGCGAACCACCGAGTCTTTGAACGCAAGTTGCGCCCGGAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCTGCCCCCCCCACACAACACCCCACGCGGGCTCGTTGCGTAGGCAGGGGGCACACACTGGCCTCCCGTGCGCACCGTCGTGCGGATGGCTTAAATTCGAGTCCTCGGCGCACGTCGTCGCGACACTACGCGAAACCACAGCCAAGGGAATGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGACTTTGTGA

Coding sequence (CDS)

ATGAAGAACGATCCCGCGAACCACCGAGTCTTTGAACGCAAGTTGCGCCCGGAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCTGCCCCCCCCACACAACACCCCACGCGGGCTCGTTGCGTAGGCAGGGGGCACACACTGGCCTCCCGTGCGCACCGTCGTGCGGATGGCTTAAATTCGAGTCCTCGGCGCACGTCGTCGCGACACTACGCGAAACCACAGCCAAGGGAATGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGACTTTGTGA

Protein sequence

MKNDPANHRVFERKLRPEPSGRGHVCLGVTHRCPPHTTPHAGSLRRQGAHTGLPCAPSCGWLKFESSAHVVATLRETTAKGMGLAESAGKEDPVELDSSLTL
Homology
[Close]
BLAST of CcUC01G012570 vs. NCBI nr
Match: KAG5225526.1 (Protein TAR [Salix suchowensis])

HSP 1 Score: 92.0 bits (227), Expect = 3.1e-15
Identity = 46/70 (65.71%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 4  DPANHRVFERKLRPEPSGRGHVCLGVTHRCPPHTTPHAGSLRRQGAHTGLPCAPSCGWLK 63
          +P NHRVFERKLRP P GRGHVCLGVTHR      PH+  L R GA TGLP AP+ GW K
Sbjct: 15 NPVNHRVFERKLRPRPPGRGHVCLGVTHR-----RPHSPRLTRAGADTGLPRAPARGWPK 74

Query: 64 FESSAHVVAT 74
           ESSA V  T
Sbjct: 75 IESSATVATT 79

[Close]
BLAST of CcUC01G012570 vs. NCBI nr
Match: RQO90471.1 (hypothetical protein POPTR_005G132300 [Populus trichocarpa])

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-15
Identity = 46/70 (65.71%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 4   DPANHRVFERKLRPEPSGRGHVCLGVTHRCPPHTTPHAGSLRRQGAHTGLPCAPSCGWLK 63
           +P NHRVFERKLRP P GRGHVCLGVTHR      PH+  L R GA TGLP AP+ GW K
Sbjct: 68  NPVNHRVFERKLRPRPLGRGHVCLGVTHR-----RPHSPRLTRAGADTGLPRAPARGWPK 127

Query: 64  FESSAHVVAT 74
            ESSA V  T
Sbjct: 128 IESSATVATT 132

[Close]
BLAST of CcUC01G012570 vs. NCBI nr
Match: PNS22479.1 (hypothetical protein POPTR_T140800 [Populus trichocarpa] >PNS22480.1 hypothetical protein POPTR_T140900 [Populus trichocarpa] >PNS22481.1 hypothetical protein POPTR_T141000 [Populus trichocarpa] >PNS22483.1 hypothetical protein POPTR_T141200 [Populus trichocarpa] >PNT05655.1 hypothetical protein POPTR_014G185400 [Populus trichocarpa])

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-15
Identity = 46/70 (65.71%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 4  DPANHRVFERKLRPEPSGRGHVCLGVTHRCPPHTTPHAGSLRRQGAHTGLPCAPSCGWLK 63
          +P NHRVFERKLRP P GRGHVCLGVTHR      PH+  L R GA TGLP AP+ GW K
Sbjct: 15 NPVNHRVFERKLRPRPLGRGHVCLGVTHR-----RPHSPRLTRAGADTGLPRAPARGWPK 74

Query: 64 FESSAHVVAT 74
           ESSA V  T
Sbjct: 75 IESSATVATT 79

[Close]
BLAST of CcUC01G012570 vs. NCBI nr
Match: PNS24162.1 (hypothetical protein POPTR_T006700 [Populus trichocarpa])

HSP 1 Score: 91.3 bits (225), Expect = 5.3e-15
Identity = 46/70 (65.71%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 4  DPANHRVFERKLRPEPSGRGHVCLGVTHRCPPHTTPHAGSLRRQGAHTGLPCAPSCGWLK 63
          +P NHRVFERKLRP P GRGHVCLGVTHR      PH+  L R GA TGLP AP+ GW K
Sbjct: 15 NPVNHRVFERKLRPRPLGRGHVCLGVTHR-----RPHSPLLTRAGADTGLPRAPARGWPK 74

Query: 64 FESSAHVVAT 74
           ESSA V  T
Sbjct: 75 IESSATVATT 79

[Close]
BLAST of CcUC01G012570 vs. NCBI nr
Match: PNT05667.1 (hypothetical protein POPTR_014G186600 [Populus trichocarpa])

HSP 1 Score: 89.0 bits (219), Expect = 2.6e-14
Identity = 45/70 (64.29%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 4  DPANHRVFERKLRPEPSGRGHVCLGVTHRCPPHTTPHAGSLRRQGAHTGLPCAPSCGWLK 63
          +P NHRVFERKLRP P GRGHVCLGVT+R      PH+  L R GA TGLP AP+ GW K
Sbjct: 15 NPVNHRVFERKLRPRPLGRGHVCLGVTYR-----RPHSPRLTRVGADTGLPRAPARGWPK 74

Query: 64 FESSAHVVAT 74
           ESSA V  T
Sbjct: 75 IESSAMVATT 79

[Close]
BLAST of CcUC01G012570 vs. ExPASy TrEMBL
Match: U5FGY4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G132300 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-15
Identity = 46/70 (65.71%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 4  DPANHRVFERKLRPEPSGRGHVCLGVTHRCPPHTTPHAGSLRRQGAHTGLPCAPSCGWLK 63
          +P NHRVFERKLRP P GRGHVCLGVTHR      PH+  L R GA TGLP AP+ GW K
Sbjct: 15 NPVNHRVFERKLRPRPLGRGHVCLGVTHR-----RPHSPRLTRAGADTGLPRAPARGWPK 74

Query: 64 FESSAHVVAT 74
           ESSA V  T
Sbjct: 75 IESSATVATT 79

[Close]
BLAST of CcUC01G012570 vs. ExPASy TrEMBL
Match: A0A3N7FVM0 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G132300 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-15
Identity = 46/70 (65.71%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 4   DPANHRVFERKLRPEPSGRGHVCLGVTHRCPPHTTPHAGSLRRQGAHTGLPCAPSCGWLK 63
           +P NHRVFERKLRP P GRGHVCLGVTHR      PH+  L R GA TGLP AP+ GW K
Sbjct: 68  NPVNHRVFERKLRPRPLGRGHVCLGVTHR-----RPHSPRLTRAGADTGLPRAPARGWPK 127

Query: 64  FESSAHVVAT 74
            ESSA V  T
Sbjct: 128 IESSATVATT 132

[Close]
BLAST of CcUC01G012570 vs. ExPASy TrEMBL
Match: A0A2K1RA43 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_T006700 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.6e-15
Identity = 46/70 (65.71%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 4  DPANHRVFERKLRPEPSGRGHVCLGVTHRCPPHTTPHAGSLRRQGAHTGLPCAPSCGWLK 63
          +P NHRVFERKLRP P GRGHVCLGVTHR      PH+  L R GA TGLP AP+ GW K
Sbjct: 15 NPVNHRVFERKLRPRPLGRGHVCLGVTHR-----RPHSPLLTRAGADTGLPRAPARGWPK 74

Query: 64 FESSAHVVAT 74
           ESSA V  T
Sbjct: 75 IESSATVATT 79

[Close]
BLAST of CcUC01G012570 vs. ExPASy TrEMBL
Match: A0A2K1XY07 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G186600 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 45/70 (64.29%), Postives = 49/70 (70.00%), Query Frame = 0 

Query: 4  DPANHRVFERKLRPEPSGRGHVCLGVTHRCPPHTTPHAGSLRRQGAHTGLPCAPSCGWLK 63
          +P NHRVFERKLRP P GRGHVCLGVT+R      PH+  L R GA TGLP AP+ GW K
Sbjct: 15 NPVNHRVFERKLRPRPLGRGHVCLGVTYR-----RPHSPRLTRVGADTGLPRAPARGWPK 74

Query: 64 FESSAHVVAT 74
           ESSA V  T
Sbjct: 75 IESSAMVATT 79

[Close]
BLAST of CcUC01G012570 vs. ExPASy TrEMBL
Match: A0A2K1XY01 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G186000 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.2e-14
Identity = 44/67 (65.67%), Postives = 46/67 (68.66%), Query Frame = 0 

Query: 7  NHRVFERKLRPEPSGRGHVCLGVTHRCPPHTTPHAGSLRRQGAHTGLPCAPSCGWLKFES 66
          NHRVFERKL P P GRGHVCLGVTHR      PH+  L R GA TGLP AP+ GW K ES
Sbjct: 18 NHRVFERKLHPRPLGRGHVCLGVTHR-----RPHSPRLTRAGADTGLPRAPARGWPKIES 77

Query: 67 SAHVVAT 74
          SA V  T
Sbjct: 78 SATVAMT 79

The following BLAST results are available for this feature:
BLAST of CcUC01G012570 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG5225526.13.1e-1565.71Protein TAR [Salix suchowensis][more]
RQO90471.14.0e-1565.71hypothetical protein POPTR_005G132300 [Populus trichocarpa][more]
PNS22479.14.0e-1565.71hypothetical protein POPTR_T140800 [Populus trichocarpa] >PNS22480.1 hypothetica... [more]
PNS24162.15.3e-1565.71hypothetical protein POPTR_T006700 [Populus trichocarpa][more]
PNT05667.12.6e-1464.29hypothetical protein POPTR_014G186600 [Populus trichocarpa][more]
BLAST of CcUC01G012570 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC01G012570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
U5FGY42.0e-1565.71Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G132300 PE=4 ... [more]
A0A3N7FVM02.0e-1565.71Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G132300 PE=4 ... [more]
A0A2K1RA432.6e-1565.71Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_T006700 PE=4 SV=... [more]
A0A2K1XY071.3e-1464.29Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G186600 PE=4 ... [more]
A0A2K1XY018.2e-1465.67Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G186000 PE=4 ... [more]
BLAST of CcUC01G012570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR33220BNAA09G04420D PROTEINcoord: 5..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC01G012570.1CcUC01G012570.1mRNA